BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3230358.2.1
(2136 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR017202.1|DR017202 STRS1_14_E08.g1_A034 Shoot tip pitch... 145 9e-033
gb|DR691139.1|DR691139 EST1081225 Normalized pine embryo li... 145 9e-033
gb|DT636541.1|DT636541 EST1151472 Normalized pine embryo li... 145 9e-033
dbj|BD266925.1| Compositions isolated from plant cells and ... 145 9e-033
gb|CO361947.1|CO361947 NDL2_8_D04.b1_A029 Needles control 2... 129 5e-028
gb|CF665519.1|CF665519 RTCNT1_16_B07.g1_A029 Root control P... 121 1e-025
gb|DR017123.1|DR017123 STRS1_14_E08.b1_A034 Shoot tip pitch... 119 5e-025
gb|CF402640.1|CF402640 RTWW1_21_H11.g1_A015 Well-watered lo... 109 5e-022
gb|DR386897.1|DR386897 RTHG1_18_D02.b1_A029 Roots plus adde... 105 7e-021
gb|AW758723.1|AW758723 NXNV_086_F04_F Nsf Xylem Normal wood... 78 2e-012
dbj|BD267216.1| Compositions isolated from plant cells and ... 70 4e-010
gb|BM428106.1|BM428106 NXRV_008_H01_F NXRV (Nsf Xylem Root ... 68 2e-009
gb|BQ634741.1|BQ634741 NXRV072_F12_F NXRV (Nsf Xylem Root w... 68 2e-009
gb|CO363405.1|CO363405 RTK1_9_C03.g1_A029 Roots minus potas... 68 2e-009
gb|DT628023.1|DT628023 EST1156772 Subtracted pine embryo li... 68 2e-009
gb|BX681938.1|BX681938 BX681938 RS Pinus pinaster cDNA clon... 66 6e-009
gb|BF220688.1|BF220688 NXCI_151_F10_F NXCI (Nsf Xylem Compr... 62 1e-007
gb|BQ699984.1|BQ699984 NXRV132_F02_F NXRV (Nsf Xylem Root w... 62 1e-007
gb|CF394975.1|CF394975 RTDS2_8_D05.g1_A021 Drought-stressed... 62 1e-007
gb|CF665437.1|CF665437 RTCNT1_16_B07.b1_A029 Root control P... 62 1e-007
gb|CO161769.1|CO161769 FLD1_31_B12.b1_A029 Root flooded Pin... 62 1e-007
gb|CO166244.1|CO166244 FLD1_60_B04.g1_A029 Root flooded Pin... 62 1e-007
gb|CV034080.1|CV034080 RTNACL1_38_B08.g1_A029 Roots plus ad... 62 1e-007
gb|DR054960.1|DR054960 RTCA1_20_E02.g1_A029 Roots minus cal... 62 1e-007
gb|DR110333.1|DR110333 RTS1_10_G02.b1_A029 Roots minus sulf... 62 1e-007
gb|DR110424.1|DR110424 RTS1_10_G02.g1_A029 Roots minus sulf... 62 1e-007
gb|DR177364.1|DR177364 RTMNUT1_4_H09.g1_A029 Roots minus mi... 62 1e-007
gb|DR388305.1|DR388305 RTHG1_27_A03.g1_A029 Roots plus adde... 62 1e-007
gb|AW011134.1|AW011134 ST17B03 Pine TriplEx shoot tip libra... 60 4e-007
gb|AW755068.1|AW755068 PC10D11 Pine TriplEx pollen cone lib... 60 4e-007
gb|AW981611.1|AW981611 PC14F06 Pine TriplEx pollen cone lib... 60 4e-007
gb|BF517514.1|BF517514 NXSI_025_A11_F NXSI (Nsf Xylem Side ... 60 4e-007
gb|BG275597.1|BG275597 NXSI_143_G06_F NXSI (Nsf Xylem Side ... 60 4e-007
gb|BG317994.1|BG317994 NXPV_008_C03_F NXPV (Nsf Xylem Plani... 60 4e-007
gb|BI077116.1|BI077116 NXPV_087_G11_F NXPV (Nsf Xylem Plani... 60 4e-007
gb|BI643875.1|BI643875 NXPV_126_C10_F NXPV (Nsf Xylem Plani... 60 4e-007
gb|BQ695540.1|BQ695540 NXPV_025_G04_F NXPV (Nsf Xylem Plani... 60 4e-007
gb|BQ696803.1|BQ696803 NXPV_045_D08_F NXPV (Nsf Xylem Plani... 60 4e-007
gb|CF389137.1|CF389137 RTDR2_13_C10.g1_A021 Loblolly pine r... 60 4e-007
gb|CF393965.1|CF393965 RTDS2_2_F01.g1_A021 Drought-stressed... 60 4e-007
gb|CF476467.1|CF476467 RTWW3_1_E07.g1_A022 Well-watered lob... 60 4e-007
gb|BX676964.1|BX676964 BX676964 RN Pinus pinaster cDNA clon... 60 4e-007
gb|BX681022.1|BX681022 BX681022 RS Pinus pinaster cDNA clon... 60 4e-007
gb|BX681862.1|BX681862 BX681862 RS Pinus pinaster cDNA clon... 60 4e-007
gb|CR392502.1|CR392502 CR392502 RN Pinus pinaster cDNA clon... 60 4e-007
gb|CO162164.1|CO162164 FLD1_33_C06.g1_A029 Root flooded Pin... 60 4e-007
gb|CO162471.1|CO162471 FLD1_35_B05.g1_A029 Root flooded Pin... 60 4e-007
gb|CO164989.1|CO164989 FLD1_51_D01.g1_A029 Root flooded Pin... 60 4e-007
gb|CO169948.1|CO169948 NDL1_10_E04.g1_A029 Needles control ... 60 4e-007
gb|CO198733.1|CO198733 GEO1_16_C10.b1_A029 Root gravitropis... 60 4e-007
gb|CO200452.1|CO200452 GEO2_7_B12.g1_A032 Root gravitropism... 60 4e-007
gb|CO200656.1|CO200656 GEO2_8_E12.g1_A032 Root gravitropism... 60 4e-007
gb|CO361539.1|CO361539 NDL2_5_A11.g1_A029 Needles control 2... 60 4e-007
gb|CO362330.1|CO362330 RTK1_2_H08.g1_A029 Roots minus potas... 60 4e-007
gb|CO367318.1|CO367318 RTK1_33_C11.g1_A029 Roots minus pota... 60 4e-007
gb|CO368983.1|CO368983 RTK1_44_D12.b1_A029 Roots minus pota... 60 4e-007
gb|CO370286.1|CO370286 RTK1_66_H06.g1_A029 Roots minus pota... 60 4e-007
gb|CX647836.1|CX647836 COLD1_20_D11.g1_A029 Root cold Pinus... 60 4e-007
gb|CX649542.1|CX649542 COLD1_35_H12.g1_A029 Root cold Pinus... 60 4e-007
gb|CX653077.1|CX653077 COLD1_63_F09.b1_A029 Root cold Pinus... 60 4e-007
gb|CX653127.1|CX653127 COLD1_63_C05.g1_A029 Root cold Pinus... 60 4e-007
gb|CX712487.1|CX712487 RTPQ1_2_G04.g2_A032 Roots treated wi... 60 4e-007
gb|CX712905.1|CX712905 RTPQ1_5_C11.g1_A032 Roots treated wi... 60 4e-007
gb|CX713189.1|CX713189 RTPQ1_7_C01.g1_A032 Roots treated wi... 60 4e-007
gb|CX715629.1|CX715629 RTPQ1_35_B02.g1_A032 Roots treated w... 60 4e-007
gb|DR012842.1|DR012842 HEAT1_15_G10.b1_A029 Root at 37 C fo... 60 4e-007
gb|DR019112.1|DR019112 STRS1_27_H04.g1_A034 Shoot tip pitch... 60 4e-007
gb|DR019521.1|DR019521 STRS1_30_D04.g1_A034 Shoot tip pitch... 60 4e-007
gb|DR019545.1|DR019545 STRS1_30_F09.g1_A034 Shoot tip pitch... 60 4e-007
gb|DR021599.1|DR021599 STRS1_45_F04.g1_A034 Shoot tip pitch... 60 4e-007
gb|DR023574.1|DR023574 STRS1_58_C12.g1_A034 Shoot tip pitch... 60 4e-007
gb|DR024556.1|DR024556 STRS1_65_F12.g1_A034 Shoot tip pitch... 60 4e-007
gb|DR025124.1|DR025124 STRS1_69_F01.g1_A034 Shoot tip pitch... 60 4e-007
gb|DR025480.1|DR025480 STRS1_71_G12.g1_A034 Shoot tip pitch... 60 4e-007
gb|DR051683.1|DR051683 RTBOR1_31_E07.g1_A029 Roots plus add... 60 4e-007
gb|DR068906.1|DR068906 RTDK1_3_C11.g1_A029 Roots, dark Pinu... 60 4e-007
gb|DR069339.1|DR069339 RTDK1_6_D01.g1_A029 Roots, dark Pinu... 60 4e-007
gb|DR079325.1|DR079325 RTFEPL1_10_C05.g1_A029 Roots plus ad... 60 4e-007
gb|DR094274.1|DR094274 STRR1_13_C03.g1_A033 Stem Response R... 60 4e-007
gb|DR096114.1|DR096114 STRR1_25_G04.g1_A033 Stem Response R... 60 4e-007
gb|DR159911.1|DR159911 RTFE1_2_A07.g1_A029 Roots minus iron... 60 4e-007
gb|DR159912.1|DR159912 RTFE1_2_A08.g1_A029 Roots minus iron... 60 4e-007
gb|DR161113.1|DR161113 RTFE1_9_H12.g1_A029 Roots minus iron... 60 4e-007
gb|DR164212.1|DR164212 RTFE1_47_B12.g1_A029 Roots minus iro... 60 4e-007
gb|DR166786.1|DR166786 RTPHOS1_14_A07.g1_A029 Roots minus p... 60 4e-007
gb|DR385265.1|DR385265 RTHG1_7_D04.g1_A029 Roots plus added... 60 4e-007
gb|DR385885.1|DR385885 RTHG1_11_A10.g1_A029 Roots plus adde... 60 4e-007
gb|DR387179.1|DR387179 RTHG1_20_B03.b1_A029 Roots plus adde... 60 4e-007
gb|DR387457.1|DR387457 RTHG1_21_H06.g2_A029 Roots plus adde... 60 4e-007
gb|DR388109.1|DR388109 RTHG1_26_E11.b1_A029 Roots plus adde... 60 4e-007
gb|DR388368.1|DR388368 RTHG1_27_G06.g1_A029 Roots plus adde... 60 4e-007
gb|DR389139.1|DR389139 RTHG1_32_D12.g1_A029 Roots plus adde... 60 4e-007
gb|DR693682.1|DR693682 EST1083771 Normalized pine embryo li... 60 4e-007
gb|DR745279.1|DR745279 RTCU1_28_F07.b1_A029 Roots plus adde... 60 4e-007
gb|DT638296.1|DT638296 EST1153227 Normalized pine embryo li... 60 4e-007
gb|CF671297.1|CF671297 RTCNT1_56_D05.b1_A029 Root control P... 58 2e-006
gb|CV031602.1|CV031602 RTNACL1_2_C06.g1_A029 Roots plus add... 56 6e-006
gb|BG317674.1|BG317674 NXPV_004_E01_F NXPV (Nsf Xylem Plani... 54 2e-005
gb|CO198328.1|CO198328 GEO1_12_H10.g1_A029 Root gravitropis... 54 2e-005
gb|DT630644.1|DT630644 EST1155056 Subtracted pine embryo li... 54 2e-005
gb|CO165153.1|CO165153 FLD1_52_E09.g1_A029 Root flooded Pin... 48 0.002
gb|CO362134.1|CO362134 RTK1_1_B05.g1_A029 Roots minus potas... 48 0.002
gb|CO362143.1|CO362143 RTK1_1_C05.g1_A029 Roots minus potas... 48 0.002
gb|DR023990.1|DR023990 STRS1_61_C03.g1_A034 Shoot tip pitch... 48 0.002
gb|DR079246.1|DR079246 RTFEPL1_10_C05.b1_A029 Roots plus ad... 48 0.002
gb|DR689742.1|DR689742 EST1079828 Normalized pine embryo li... 48 0.002
gb|DT635371.1|DT635371 EST1150302 Normalized pine embryo li... 48 0.002
dbj|BD267272.1| Compositions isolated from plant cells and ... 48 0.002
gb|CO169185.1|CO169185 NDL1_5_G05.b1_A029 Needles control P... 44 0.024
gb|CO169264.1|CO169264 NDL1_5_G05.g1_A029 Needles control P... 44 0.024
gb|CX653244.1|CX653244 COLD1_64_G06.b1_A029 Root cold Pinus... 44 0.024
gb|CX713108.1|CX713108 RTPQ1_7_C01.b1_A032 Roots treated wi... 44 0.024
gb|DR011223.1|DR011223 HEAT1_4_G08.b1_A029 Root at 37 C for... 44 0.024
gb|DR096246.1|DR096246 STRR1_26_E11.g1_A033 Stem Response R... 44 0.024
dbj|BD266926.1| Compositions isolated from plant cells and ... 44 0.024
dbj|BD267251.1| Compositions isolated from plant cells and ... 44 0.024
gb|DR078873.1|DR078873 RTFEPL1_7_H07.b1_A029 Roots plus add... 42 0.093
gb|DR051070.1|DR051070 RTBOR1_27_B01.g1_A029 Roots plus add... 40 0.37
>gb|DR017202.1|DR017202 STRS1_14_E08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_14_E08_A034 5', mRNA sequence
Length = 616
Score = 145 bits (73), Expect = 9e-033
Identities = 280/349 (80%)
Strand = Plus / Minus
Query: 554 cctttcacccagtcaagaagcataacatcgtcatcatttgcaagacgagctagatcaaat 613
||||| ||||||||||| | ||| ||||| ||||||||||| | ||| || || ||||||
Sbjct: 446 cctttaacccagtcaagcaacatgacatcatcatcatttgctaaacgtgcaaggtcaaat 387
Query: 614 gccctctggccagtaataagctccagaagcatgatcccatagccaaaaacatcagtcttc 673
|||| || || |||||||| ||||| | |||||| ||||| ||||| || || |||||
Sbjct: 386 gcccgttgtcccgtaataagttccagcaacatgattccatatccaaatacgtctgtcttt 327
Query: 674 tcagaagacttgccggtagataggtactcgggagcaatgtgcccaattgttccacgaaca 733
|| |||||||| || ||||| |||||||| || || ||||| ||||| ||||||||||||
Sbjct: 326 tccgaagactttccagtagaaaggtactcaggtgctatgtggccaatggttccacgaaca 267
Query: 734 gctgttgtgacatgggtatccttgtagtccataagcttggcaagcccgaaatcacccaca 793
|| || || ||||| || ||||| || |||||||| || || | || ||||| |||||
Sbjct: 266 gccgtcgtaacatgtgtgtccttataatccataagttttgccaagccaaaatcccccacc 207
Query: 794 actgcctcgaagtcctcatccaaaagaatatttgcagctttgacatcccgatggatgatt 853
|||||||| | || ||||||| | || || ||||| ||||||||||| || || ||
Sbjct: 206 actgcctcatattcttcatccagtaagatgttagcagccttgacatcccggtgaataatc 147
Query: 854 ttgggatcgcagtgatcatgcaagtaagaaagtcctcttgcagatccca 902
|| ||||| || |||||||||||||| || || ||||||||||| ||||
Sbjct: 146 ttaggatcacaatgatcatgcaagtaggagagacctcttgcagaaccca 98
>gb|DR691139.1|DR691139 EST1081225 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD472 3' end, mRNA sequence
Length = 680
Score = 145 bits (73), Expect = 9e-033
Identities = 280/349 (80%)
Strand = Plus / Minus
Query: 554 cctttcacccagtcaagaagcataacatcgtcatcatttgcaagacgagctagatcaaat 613
||||| ||||||||||| | ||| ||||| ||||||||||| | ||| || || ||||||
Sbjct: 666 cctttaacccagtcaagcaacatgacatcatcatcatttgctaaacgtgcaaggtcaaat 607
Query: 614 gccctctggccagtaataagctccagaagcatgatcccatagccaaaaacatcagtcttc 673
|||| || || |||||||| ||||| | |||||| ||||| ||||| || || |||||
Sbjct: 606 gcccgttgtcccgtaataagttccagcaacatgattccatatccaaatacgtctgtcttt 547
Query: 674 tcagaagacttgccggtagataggtactcgggagcaatgtgcccaattgttccacgaaca 733
|| |||||||| || ||||| |||||||| || || ||||| ||||| ||||||||||||
Sbjct: 546 tccgaagactttccagtagaaaggtactcaggtgctatgtggccaatggttccacgaaca 487
Query: 734 gctgttgtgacatgggtatccttgtagtccataagcttggcaagcccgaaatcacccaca 793
|| || || ||||| || ||||| || |||||||| || || | || ||||| |||||
Sbjct: 486 gccgtcgtaacatgtgtgtccttataatccataagttttgccaagccaaaatcccccacc 427
Query: 794 actgcctcgaagtcctcatccaaaagaatatttgcagctttgacatcccgatggatgatt 853
|||||||| | || ||||||| | || || ||||| ||||||||||| || || ||
Sbjct: 426 actgcctcatattcttcatccagtaagatgttagcagccttgacatcccggtgaataatc 367
Query: 854 ttgggatcgcagtgatcatgcaagtaagaaagtcctcttgcagatccca 902
|| ||||| || |||||||||||||| || || ||||||||||| ||||
Sbjct: 366 ttaggatcacaatgatcatgcaagtaggagagacctcttgcagaaccca 318
Score = 107 bits (54), Expect = 2e-021
Identities = 153/186 (82%)
Strand = Plus / Minus
Query: 1012 ttcagtaggtgtcatgcagaaaccacgaagtcggagaaggttcttgtgcaccgccatgct 1071
|||||| |||||||||||||| ||||| ||||| || |||||| | || || ||||||||
Sbjct: 208 ttcagtgggtgtcatgcagaatccacgtagtcgaaggaggttcctatgtactgccatgct 149
Query: 1072 aatcatctcaacctctgtttggaactgaagctcaccaccaggtgtacgctcctcttttag 1131
|||||||| || |||||||| ||||| | ||| ||||| ||||||||||| || || ||
Sbjct: 148 tatcatctccacttctgtttgaaactgcaactctccacccggtgtacgctcttccttcag 89
Query: 1132 tcttttcactgctaccaatgagccatcagcaagccttcctttgtacacttttccaaaacc 1191
| ||| || || ||||| || ||||| ||||| | ||||||||||| |||||||||||
Sbjct: 88 acgttttacagccaccaaggaaccatctgcaaggcgccctttgtacacctttccaaaacc 29
Query: 1192 gcctct 1197
|||||
Sbjct: 28 acctct 23
>gb|DT636541.1|DT636541 EST1151472 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGT05 3' end, mRNA sequence
Length = 812
Score = 145 bits (73), Expect = 9e-033
Identities = 280/349 (80%)
Strand = Plus / Minus
Query: 554 cctttcacccagtcaagaagcataacatcgtcatcatttgcaagacgagctagatcaaat 613
||||| ||||||||||| | ||| ||||| ||||||||||| | ||| || || ||||||
Sbjct: 674 cctttaacccagtcaagcaacatgacatcatcatcatttgctaaacgtgcaaggtcaaat 615
Query: 614 gccctctggccagtaataagctccagaagcatgatcccatagccaaaaacatcagtcttc 673
|||| || || |||||||| ||||| | |||||| ||||| ||||| || || |||||
Sbjct: 614 gcccgttgtcccgtaataagttccagcaacatgattccatatccaaatacgtctgtcttt 555
Query: 674 tcagaagacttgccggtagataggtactcgggagcaatgtgcccaattgttccacgaaca 733
|| |||||||| || ||||| |||||||| || || ||||| ||||| ||||||||||||
Sbjct: 554 tccgaagactttccagtagaaaggtactcaggtgctatgtggccaatggttccacgaaca 495
Query: 734 gctgttgtgacatgggtatccttgtagtccataagcttggcaagcccgaaatcacccaca 793
|| || || ||||| || ||||| || |||||||| || || | || ||||| |||||
Sbjct: 494 gccgtcgtaacatgtgtgtccttataatccataagttttgccaagccaaaatcccccacc 435
Query: 794 actgcctcgaagtcctcatccaaaagaatatttgcagctttgacatcccgatggatgatt 853
|||||||| | || ||||||| | || || ||||| ||||||||||| || || ||
Sbjct: 434 actgcctcatattcttcatccagtaagatgttagcagccttgacatcccggtgaataatc 375
Query: 854 ttgggatcgcagtgatcatgcaagtaagaaagtcctcttgcagatccca 902
|| ||||| || |||||||||||||| || || ||||||||||| ||||
Sbjct: 374 ttaggatcacaatgatcatgcaagtaggagagacctcttgcagaaccca 326
Score = 107 bits (54), Expect = 2e-021
Identities = 153/186 (82%)
Strand = Plus / Minus
Query: 1012 ttcagtaggtgtcatgcagaaaccacgaagtcggagaaggttcttgtgcaccgccatgct 1071
|||||| |||||||||||||| ||||| ||||| || |||||| | || || ||||||||
Sbjct: 216 ttcagtgggtgtcatgcagaatccacgtagtcgaaggaggttcctatgtactgccatgct 157
Query: 1072 aatcatctcaacctctgtttggaactgaagctcaccaccaggtgtacgctcctcttttag 1131
|||||||| || |||||||| ||||| | ||| ||||| ||||||||||| || || ||
Sbjct: 156 tatcatctccacttctgtttgaaactgcaactctccacccggtgtacgctcttccttcag 97
Query: 1132 tcttttcactgctaccaatgagccatcagcaagccttcctttgtacacttttccaaaacc 1191
| ||| || || ||||| || ||||| ||||| | ||||||||||| |||||||||||
Sbjct: 96 acgttttacagccaccaaggaaccatctgcaaggcgccctttgtacacctttccaaaacc 37
Query: 1192 gcctct 1197
|||||
Sbjct: 36 acctct 31
>dbj|BD266925.1| Compositions isolated from plant cells and utilization of the same in
modifying plant cell signal transduction
Length = 2868
Score = 145 bits (73), Expect = 9e-033
Identities = 280/349 (80%)
Strand = Plus / Minus
Query: 554 cctttcacccagtcaagaagcataacatcgtcatcatttgcaagacgagctagatcaaat 613
||||| ||||||||||| | ||| ||||| ||||||||||| | ||| || || ||||||
Sbjct: 1819 cctttaacccagtcaagcaacatgacatcatcatcatttgctaaacgtgcaaggtcaaat 1760
Query: 614 gccctctggccagtaataagctccagaagcatgatcccatagccaaaaacatcagtcttc 673
|||| || || |||||||| ||||| | |||||| ||||| ||||| || || |||||
Sbjct: 1759 gcccgttgtcccgtaataagttccagcaacatgattccatatccaaatacgtctgtcttt 1700
Query: 674 tcagaagacttgccggtagataggtactcgggagcaatgtgcccaattgttccacgaaca 733
|| |||||||| || ||||| |||||||| || || ||||| ||||| ||||||||||||
Sbjct: 1699 tccgaagactttccagtagaaaggtactcaggtgctatgtggccaatggttccacgaaca 1640
Query: 734 gctgttgtgacatgggtatccttgtagtccataagcttggcaagcccgaaatcacccaca 793
|| || || ||||| || ||||| || |||||||| || || | || ||||| |||||
Sbjct: 1639 gccgtcgtaacatgtgtgtccttataatccataagttttgccaagccaaaatcccccacc 1580
Query: 794 actgcctcgaagtcctcatccaaaagaatatttgcagctttgacatcccgatggatgatt 853
|||||||| | || ||||||| | || || ||||| ||||||||||| || || ||
Sbjct: 1579 actgcctcatattcttcatccagtaagatgttagcagccttgacatcccggtgaataatc 1520
Query: 854 ttgggatcgcagtgatcatgcaagtaagaaagtcctcttgcagatccca 902
|| ||||| || |||||||||||||| || || ||||||||||| ||||
Sbjct: 1519 ttaggatcacaatgatcatgcaagtaggagagacctcttgcagaaccca 1471
Score = 121 bits (61), Expect = 1e-025
Identities = 247/309 (79%)
Strand = Plus / Minus
Query: 1012 ttcagtaggtgtcatgcagaaaccacgaagtcggagaaggttcttgtgcaccgccatgct 1071
|||||| |||||||||||||| ||||| ||||| || |||||| | || || ||||||||
Sbjct: 1361 ttcagtgggtgtcatgcagaatccacgtagtcgaaggaggttcctatgtactgccatgct 1302
Query: 1072 aatcatctcaacctctgtttggaactgaagctcaccaccaggtgtacgctcctcttttag 1131
|||||||| || |||||||| ||||| | ||| ||||| ||||||||||| || || ||
Sbjct: 1301 tatcatctccacttctgtttgaaactgcaactctccacccggtgtacgctcttccttcag 1242
Query: 1132 tcttttcactgctaccaatgagccatcagcaagccttcctttgtacacttttccaaaacc 1191
| ||| || || ||||| || ||||| ||||| | ||||||||||| |||||||||||
Sbjct: 1241 acgttttacagccaccaaggaaccatctgcaaggcgccctttgtacacctttccaaaacc 1182
Query: 1192 gcctcttcctaaaatgttcttgttactgaaattatcagttgcaacttgaagctcccgcaa 1251
||||| || | |||||| | || || ||| |||||||||||| || | ||||| ||
Sbjct: 1181 acctctgccaagaatgtttctattgctaaaaccatcagttgcaacctgtaattcccgtaa 1122
Query: 1252 tgaaaactttttgagctgaccaagatggacttctggatcctcctcggcaggaacatcgaa 1311
||| ||| | || || || || | || ||||||||||||||||| ||||| ||||| ||
Sbjct: 1121 tgagaacctcttaagttggcctaagtgaacttctggatcctcctcagcaggtacatcaaa 1062
Query: 1312 gaaatgctc 1320
||| |||||
Sbjct: 1061 gaagtgctc 1053
Score = 101 bits (51), Expect = 1e-019
Identities = 147/179 (82%)
Strand = Plus / Minus
Query: 1805 ccacttatgttgttgctgtaaagctccaaatattggagatttttcagctggccaagttgt 1864
|||||||| |||||||| ||||||||||| || || ||||| ||||| ||||||| ||
Sbjct: 553 ccacttatattgttgctataaagctccaagtactgcagattgttcagtaggccaagctgg 494
Query: 1865 ggcactagaacgccagataattgtgcatttccaaggtcaactctgataacactgttatcg 1924
|| || | ||||| | |||||||||||| | ||| ||||| || |||||||||||
Sbjct: 493 ggaaccaatgaaccagaaagttgtgcatttcccaagtccactcttatcacactgttatca 434
Query: 1925 ttgttacacgtaacatggaaccatgtacatggattaacaagagtgggatcccaactctg 1983
||||| || |||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 433 ttgttgcatgtaacatgaaaccatgtacatggattgacgagggttggatcccaactctg 375
>gb|CO361947.1|CO361947 NDL2_8_D04.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_D04_A029 3', mRNA sequence
Length = 747
Score = 129 bits (65), Expect = 5e-028
Identities = 260/325 (80%)
Strand = Plus / Plus
Query: 578 acatcgtcatcatttgcaagacgagctagatcaaatgccctctggccagtaataagctcc 637
||||| ||||||||||| | ||| || || |||||||||| || || |||||||| |||
Sbjct: 6 acatcatcatcatttgctaaacgtgcaaggtcaaatgcccgttgtcccgtaataagttcc 65
Query: 638 agaagcatgatcccatagccaaaaacatcagtcttctcagaagacttgccggtagatagg 697
|| | |||||| ||||| ||||| || || ||||| || |||||||| || ||||| |||
Sbjct: 66 agcaacatgattccatatccaaatacgtctgtcttttccgaagactttccagtagaaagg 125
Query: 698 tactcgggagcaatgtgcccaattgttccacgaacagctgttgtgacatgggtatccttg 757
||||| || || ||||| ||||| |||||||||||||| || || ||||| || |||||
Sbjct: 126 tactcaggtgctatgtggccaatggttccacgaacagccgtcgtaacatgtgtgtcctta 185
Query: 758 tagtccataagcttggcaagcccgaaatcacccacaactgcctcgaagtcctcatccaaa 817
|| |||||||| || || | || ||||| ||||| |||||||| | || |||||||
Sbjct: 186 taatccataagttttgccaagccaaaatcccccaccactgcctcatattcttcatccagt 245
Query: 818 agaatatttgcagctttgacatcccgatggatgattttgggatcgcagtgatcatgcaag 877
| || || ||||| ||||||||||| || || || || ||||| || ||||||||||||
Sbjct: 246 aagatgttagcagccttgacatcccggtgaataatcttaggatcacaatgatcatgcaag 305
Query: 878 taagaaagtcctcttgcagatccca 902
|| || || ||||||||||| ||||
Sbjct: 306 taggagagacctcttgcagaaccca 330
Score = 119 bits (60), Expect = 5e-025
Identities = 246/308 (79%)
Strand = Plus / Plus
Query: 1012 ttcagtaggtgtcatgcagaaaccacgaagtcggagaaggttcttgtgcaccgccatgct 1071
|||||| |||||||||||||| ||||| ||||| || |||||| | || || ||||||||
Sbjct: 440 ttcagtgggtgtcatgcagaatccacgtagtcgaaggaggttcctatgtactgccatgct 499
Query: 1072 aatcatctcaacctctgtttggaactgaagctcaccaccaggtgtacgctcctcttttag 1131
|||||||| || |||||||| ||||| | ||| ||||| ||||||||||| || || ||
Sbjct: 500 tatcatctccacttctgtttgaaactgcaactctccacccggtgtacgctcttccttcag 559
Query: 1132 tcttttcactgctaccaatgagccatcagcaagccttcctttgtacacttttccaaaacc 1191
| ||| || || ||||| || ||||| ||||| | ||||||||||| |||||||||||
Sbjct: 560 acgttttacagccaccaaggaaccatctgcaaggcgccctttgtacacctttccaaaacc 619
Query: 1192 gcctcttcctaaaatgttcttgttactgaaattatcagttgcaacttgaagctcccgcaa 1251
||||| || | |||||| | || || ||| |||||||||||| || | ||||| ||
Sbjct: 620 acctctgccaagaatgtttctattgctaaaaccatcagttgcaacctgtaattcccgtaa 679
Query: 1252 tgaaaactttttgagctgaccaagatggacttctggatcctcctcggcaggaacatcgaa 1311
||| ||| | || || || || | || ||||||||||||||||| ||||| ||||| ||
Sbjct: 680 tgagaacctcttaagttggcctaagtgaacttctggatcctcctcagcaggtacatcaaa 739
Query: 1312 gaaatgct 1319
||| ||||
Sbjct: 740 gaagtgct 747
>gb|CF665519.1|CF665519 RTCNT1_16_B07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_B07_A029 5', mRNA sequence
Length = 651
Score = 121 bits (61), Expect = 1e-025
Identities = 247/309 (79%)
Strand = Plus / Minus
Query: 1012 ttcagtaggtgtcatgcagaaaccacgaagtcggagaaggttcttgtgcaccgccatgct 1071
|||||| |||||||||||||| ||||| ||||| || |||||| | || || ||||||||
Sbjct: 602 ttcagtgggtgtcatgcagaatccacgtagtcgaaggaggttcctatgtactgccatgct 543
Query: 1072 aatcatctcaacctctgtttggaactgaagctcaccaccaggtgtacgctcctcttttag 1131
|||||||| || |||||||| ||||| | ||| ||||| ||||||||||| || || ||
Sbjct: 542 tatcatctccacttctgtttgaaactgcaactctccacccggtgtacgctcttccttcag 483
Query: 1132 tcttttcactgctaccaatgagccatcagcaagccttcctttgtacacttttccaaaacc 1191
| ||| || || ||||| || ||||| ||||| | ||||||||||| |||||||||||
Sbjct: 482 acgttttacagccaccaaggaaccatctgcaaggcgccctttgtacacctttccaaaacc 423
Query: 1192 gcctcttcctaaaatgttcttgttactgaaattatcagttgcaacttgaagctcccgcaa 1251
||||| || | |||||| | || || ||| |||||||||||| || | ||||| ||
Sbjct: 422 acctctgccaagaatgtttctattgctaaaaccatcagttgcaacctgtaattcccgtaa 363
Query: 1252 tgaaaactttttgagctgaccaagatggacttctggatcctcctcggcaggaacatcgaa 1311
||| ||| | || || || || | || ||||||||||||||||| ||||| ||||| ||
Sbjct: 362 tgagaacctcttaagttggcctaagtgaacttctggatcctcctcagcaggtacatcaaa 303
Query: 1312 gaaatgctc 1320
||| |||||
Sbjct: 302 gaagtgctc 294
>gb|DR017123.1|DR017123 STRS1_14_E08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_14_E08_A034 3', mRNA sequence
Length = 866
Score = 119 bits (60), Expect = 5e-025
Identities = 201/248 (81%)
Strand = Plus / Minus
Query: 554 cctttcacccagtcaagaagcataacatcgtcatcatttgcaagacgagctagatcaaat 613
||||| ||||||||||| | ||| ||||| ||||||||||| | ||| || || ||||||
Sbjct: 248 cctttaacccagtcaagcaacatgacatcatcatcatttgctaaacgtgcaaggtcaaat 189
Query: 614 gccctctggccagtaataagctccagaagcatgatcccatagccaaaaacatcagtcttc 673
|||| || || |||||||| ||||| | |||||| ||||| ||||| || || |||||
Sbjct: 188 gcccgttgtcccgtaataagttccagcaacatgattccatatccaaatacgtctgtcttt 129
Query: 674 tcagaagacttgccggtagataggtactcgggagcaatgtgcccaattgttccacgaaca 733
|| |||||||| || ||||| |||||||| || || ||||| ||||| ||||||||||||
Sbjct: 128 tccgaagactttccagtagaaaggtactcaggtgctatgtggccaatggttccacgaaca 69
Query: 734 gctgttgtgacatgggtatccttgtagtccataagcttggcaagcccgaaatcacccaca 793
|| || || ||||| || ||||| || |||||||| || || | || ||||| |||||
Sbjct: 68 gccgtcgtaacatgtgtgtccttataatccataagttttgccaagccaaaatcccccacc 9
Query: 794 actgcctc 801
||||||||
Sbjct: 8 actgcctc 1
>gb|CF402640.1|CF402640 RTWW1_21_H11.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_21_H11_A015 5', mRNA sequence
Length = 614
Score = 109 bits (55), Expect = 5e-022
Identities = 175/215 (81%)
Strand = Plus / Minus
Query: 554 cctttcacccagtcaagaagcataacatcgtcatcatttgcaagacgagctagatcaaat 613
||||| ||||||||||| | ||| ||||| ||||||||||| | ||| || || ||||||
Sbjct: 531 cctttaacccagtcaagcaacatgacatcatcatcatttgctaaacgcgcaaggtcaaat 472
Query: 614 gccctctggccagtaataagctccagaagcatgatcccatagccaaaaacatcagtcttc 673
|||| || || |||||||| ||||| | |||||| ||||| ||||| || | |||||
Sbjct: 471 gcccgttgtcccgtaataagttccagcaacatgattccatatccaaatacgtgtgtcttt 412
Query: 674 tcagaagacttgccggtagataggtactcgggagcaatgtgcccaattgttccacgaaca 733
|| |||||||| || ||||| |||||||| || || ||||| ||||| ||||||||||||
Sbjct: 411 tccgaagactttccagtagaaaggtactcaggtgctatgtggccaatggttccacgaaca 352
Query: 734 gctgttgtgacatgggtatccttgtagtccataag 768
|| || || ||||| || ||||| || ||||||||
Sbjct: 351 gccgtcgtaacatgtgtgtccttataatccataag 317
>gb|DR386897.1|DR386897 RTHG1_18_D02.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_18_D02_A029 3', mRNA sequence
Length = 831
Score = 105 bits (53), Expect = 7e-021
Identities = 179/221 (80%)
Strand = Plus / Minus
Query: 554 cctttcacccagtcaagaagcataacatcgtcatcatttgcaagacgagctagatcaaat 613
||||| ||||||||||||||||| | ||| |||||| |||| | || || || ||||||
Sbjct: 226 cctttaacccagtcaagaagcatgatatcatcatcacttgctaatcgtgcaaggtcaaat 167
Query: 614 gccctctggccagtaataagctccagaagcatgatcccatagccaaaaacatcagtcttc 673
|||||||| || || |||| ||||| | ||| |||||||| |||| |||||||||||
Sbjct: 166 gccctctgtcctgtgataatttccagcaacataatcccatatgcaaatacatcagtcttt 107
Query: 674 tcagaagacttgccggtagataggtactcgggagcaatgtgcccaattgttccacgaaca 733
|| |||||||| || ||||| ||||| || || || ||||| |||||||| |||| |||
Sbjct: 106 tctgaagactttccagtagaaaggtattccggtgctatgtgtccaattgtaccacagaca 47
Query: 734 gctgttgtgacatgggtatccttgtagtccataagcttggc 774
||| || ||||| ||||||||||| |||||||| |||||
Sbjct: 46 tttgtagtcacatgagtatccttgtaatccataagtttggc 6
>gb|AW758723.1|AW758723 NXNV_086_F04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_086_F04 5' similar to Arabidopsis thaliana
sequence At1g34210 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 257
Score = 77.8 bits (39), Expect = 2e-012
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 560 acccagtcaagaagcataacatcgtcatcatttgcaagacgagctagatcaaatgccctc 619
||||||||||| | ||| ||||| ||||||||||| ||| || || ||||||||||
Sbjct: 165 acccagtcaagcaacatgacatcatcatcatttgctnnacgtgcaaggtcaaatgcccgt 106
Query: 620 tggccagtaataagctccagaagcatgatcccatagccaaaaacatcagtcttctcagaa 679
|| || |||||||| ||||| | |||||| ||||| ||||| || || ||||| || |||
Sbjct: 105 tgtcccgtaataagttccagcaacatgattccatatccaaatacgtctgtcttttccgaa 46
Query: 680 gacttgccggtagataggtactcgggagcaatgtgcccaat 720
||||| || ||||| |||||||| || || ||||| |||||
Sbjct: 45 gactttccagtagaaaggtactcaggtgctatgtggccaat 5
>dbj|BD267216.1| Compositions isolated from plant cells and utilization of the same in
modifying plant cell signal transduction
Length = 537
Score = 69.9 bits (35), Expect = 4e-010
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 1012 ttcagtaggtgtcatgcagaaaccacgaagtcggagaaggttcttgtgcaccgccatgct 1071
|||||| |||| ||| ||||| |||||||| ||||| |||||| |||| || ||||| ||
Sbjct: 366 ttcagttggtgacatacagaacccacgaagccggaggaggttcctgtgtactgccatact 307
Query: 1072 aatcatctcaacctctgtttggaactg 1098
|||||||| ||||||||||| |||||
Sbjct: 306 gatcatctccacctctgtttgaaactg 280
>gb|BM428106.1|BM428106 NXRV_008_H01_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_008_H01 5' similar to Arabidopsis thaliana
sequence At5g10290 protein serine/threonine kinase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 287
Score = 67.9 bits (34), Expect = 2e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 776 agcccgaaatcacccacaactgcctcgaagtcctcatccaaaagaatatttgcagctttg 835
||||| |||||||| ||||| || |||||||| ||||| | | | ||| ||||||||
Sbjct: 122 agcccaaaatcaccaacaacagcttcgaagtcttcatctagcaagacattagcagctttc 63
Query: 836 acatcccgatggatgattttgggatcgcagtgatcatg 873
||||||||||| ||||||||||||| |||||| |||||
Sbjct: 62 acatcccgatgaatgattttgggattgcagtgctcatg 25
>gb|BQ634741.1|BQ634741 NXRV072_F12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV072_F12 5' similar to Arabidopsis thaliana
sequence At5g10290 protein serine/threonine kinase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 298
Score = 67.9 bits (34), Expect = 2e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 776 agcccgaaatcacccacaactgcctcgaagtcctcatccaaaagaatatttgcagctttg 835
||||| |||||||| ||||| || |||||||| ||||| | | | ||| ||||||||
Sbjct: 122 agcccaaaatcaccaacaacagcttcgaagtcttcatctagcaagacattagcagctttc 63
Query: 836 acatcccgatggatgattttgggatcgcagtgatcatg 873
||||||||||| ||||||||||||| |||||| |||||
Sbjct: 62 acatcccgatgaatgattttgggattgcagtgctcatg 25
>gb|CO363405.1|CO363405 RTK1_9_C03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_9_C03_A029 5', mRNA sequence
Length = 790
Score = 67.9 bits (34), Expect = 2e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 776 agcccgaaatcacccacaactgcctcgaagtcctcatccaaaagaatatttgcagctttg 835
||||| |||||||| ||||| || |||||||| ||||| | | | ||| ||||||||
Sbjct: 294 agcccaaaatcaccaacaacagcttcgaagtcttcatctagcaagacattagcagctttc 235
Query: 836 acatcccgatggatgattttgggatcgcagtgatcatg 873
||||||||||| ||||||||||||| |||||| |||||
Sbjct: 234 acatcccgatgaatgattttgggattgcagtgctcatg 197
>gb|DT628023.1|DT628023 EST1156772 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCT39 5' end, mRNA sequence
Length = 737
Score = 67.9 bits (34), Expect = 2e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 776 agcccgaaatcacccacaactgcctcgaagtcctcatccaaaagaatatttgcagctttg 835
||||| |||||||| ||||| || |||||||| ||||| | | | ||| ||||||||
Sbjct: 126 agcccaaaatcaccaacaacagcttcgaagtcttcatctagcaagacattagcagctttc 67
Query: 836 acatcccgatggatgattttgggatcgcagtgatcatg 873
||||||||||| ||||||||||||| |||||| |||||
Sbjct: 66 acatcccgatgaatgattttgggattgcagtgctcatg 29
>gb|BX681938.1|BX681938 BX681938 RS Pinus pinaster cDNA clone RS67A12, mRNA sequence
Length = 169
Score = 65.9 bits (33), Expect = 6e-009
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 662 acatcagtcttctcagaagacttgccggtagataggtactcgggagcaatgtgcccaatt 721
||||||||||| || |||||||| || ||||| ||||| || || || ||||| ||||||
Sbjct: 166 acatcagtcttttctgaagactttccagtagaaaggtattccggtgctatgtgtccaatt 107
Query: 722 gttccacgaacagctgttgtgacatgggtatccttgtagtccataagcttggc 774
|| |||| ||| ||| || ||||| ||||||||||| |||||||| |||||
Sbjct: 106 gtaccacagacatttgtagtcacatgagtatccttgtaatccataagtttggc 54
>gb|BF220688.1|BF220688 NXCI_151_F10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_151_F10 5' similar to Arabidopsis
thaliana sequence At1g34210 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 521
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 1913 acactgttatcgttgttacacgtaacatggaaccatgtacatggatt 1959
||||||||||| ||||| || |||||||| |||||||||||||||||
Sbjct: 487 acactgttatcattgttgcatgtaacatgaaaccatgtacatggatt 441
>gb|BQ699984.1|BQ699984 NXRV132_F02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV132_F02 5' similar to Arabidopsis thaliana
sequence At5g21090 leucine-rich repeat protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 547
Score = 61.9 bits (31), Expect = 1e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattgtta 1996
||||||||||| || || |||||||||||||| |||||||| || ||||| ||||||| |
Sbjct: 213 acatggaaccaggtgcagggattaacaagagtaggatcccagctttgcaatacattgtca 154
Query: 1997 gcatctttcaagctc 2011
| |||| |||||||
Sbjct: 153 ggatctaacaagctc 139
>gb|CF394975.1|CF394975 RTDS2_8_D05.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_8_D05_A021 5', mRNA sequence
Length = 699
Score = 61.9 bits (31), Expect = 1e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattgtta 1996
||||||||||| || || |||||||||||||| |||||||| || ||||| ||||||| |
Sbjct: 441 acatggaaccaggtgcagggattaacaagagtaggatcccagctttgcaatacattgtca 382
Query: 1997 gcatctttcaagctc 2011
| |||| |||||||
Sbjct: 381 ggatctaacaagctc 367
>gb|CF665437.1|CF665437 RTCNT1_16_B07.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_B07_A029 3', mRNA sequence
Length = 757
Score = 61.9 bits (31), Expect = 1e-007
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 554 cctttcacccagtcaagaagcataacatcgtcatcatttgcaagacgagctagatcaaat 613
||||| ||||||||||| | ||| ||||| ||||||||||| | ||| || || ||||||
Sbjct: 125 cctttaacccagtcaagcaacatgacatcatcatcatttgctaaacgtgcaaggtcaaat 66
Query: 614 gccctctggccagtaataagctccagaagcatgatcccatagccaaa 660
|||| || || |||||||| ||||| | |||||| ||||| |||||
Sbjct: 65 gcccgttgtcccgtaataagttccagcaacatgattccatatccaaa 19
>gb|CO161769.1|CO161769 FLD1_31_B12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_31_B12_A029 3', mRNA sequence
Length = 819
Score = 61.9 bits (31), Expect = 1e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattgtta 1996
||||||||||| || || |||||||||||||| |||||||| || ||||| ||||||| |
Sbjct: 633 acatggaaccaggtgcagggattaacaagagtaggatcccagctttgcaatacattgtca 692
Query: 1997 gcatctttcaagctc 2011
| |||| |||||||
Sbjct: 693 ggatctaacaagctc 707
>gb|CO166244.1|CO166244 FLD1_60_B04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_60_B04_A029 5', mRNA sequence
Length = 744
Score = 61.9 bits (31), Expect = 1e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattgtta 1996
||||||||||| || || |||||||||||||| |||||||| || ||||| ||||||| |
Sbjct: 664 acatggaaccaggtgcagggattaacaagagtaggatcccagctatgcaatacattgtca 723
Query: 1997 gcatctttcaagctc 2011
| |||| |||||||
Sbjct: 724 ggatctaacaagctc 738
>gb|CV034080.1|CV034080 RTNACL1_38_B08.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_38_B08_A029 5', mRNA sequence
Length = 317
Score = 61.9 bits (31), Expect = 1e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattgtta 1996
||||||||||| || || |||||||||||||| |||||||| || ||||| ||||||| |
Sbjct: 182 acatggaaccaggtgcagggattaacaagagtaggatcccagctttgcaatacattgtca 123
Query: 1997 gcatctttcaagctc 2011
| |||| |||||||
Sbjct: 122 ggatctaacaagctc 108
>gb|DR054960.1|DR054960 RTCA1_20_E02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_20_E02_A029 5', mRNA sequence
Length = 662
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 827 gcagctttgacatcccgatggatgattttgggatcgcagtgatcatg 873
|||||||| ||||||||||| ||||||||||||| |||||| |||||
Sbjct: 518 gcagctttcacatcccgatgaatgattttgggattgcagtgctcatg 472
>gb|DR110333.1|DR110333 RTS1_10_G02.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_10_G02_A029 3', mRNA sequence
Length = 856
Score = 61.9 bits (31), Expect = 1e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattgtta 1996
||||||||||| || || |||||||||||||| |||||||| || ||||| ||||||| |
Sbjct: 90 acatggaaccaggtgcagggattaacaagagtaggatcccagctttgcaatacattgtca 31
Query: 1997 gcatctttcaagctc 2011
| |||| |||||||
Sbjct: 30 ggatctaacaagctc 16
>gb|DR110424.1|DR110424 RTS1_10_G02.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_10_G02_A029 5', mRNA sequence
Length = 821
Score = 61.9 bits (31), Expect = 1e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattgtta 1996
||||||||||| || || |||||||||||||| |||||||| || ||||| ||||||| |
Sbjct: 217 acatggaaccaggtgcagggattaacaagagtaggatcccagctttgcaatacattgtca 158
Query: 1997 gcatctttcaagctc 2011
| |||| |||||||
Sbjct: 157 ggatctaacaagctc 143
>gb|DR177364.1|DR177364 RTMNUT1_4_H09.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_4_H09_A029 5', mRNA sequence
Length = 801
Score = 61.9 bits (31), Expect = 1e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattgtta 1996
||||||||||| || || |||||||||||||| |||||||| || ||||| ||||||| |
Sbjct: 699 acatggaaccaggtgcagggattaacaagagtaggatcccagctttgcaatacattgtca 758
Query: 1997 gcatctttcaagctc 2011
| |||| |||||||
Sbjct: 759 ggatctaacaagctc 773
>gb|DR388305.1|DR388305 RTHG1_27_A03.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_27_A03_A029 5', mRNA sequence
Length = 850
Score = 61.9 bits (31), Expect = 1e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattgtta 1996
||||||||||| || || |||||||||||||| |||||||| || ||||| ||||||| |
Sbjct: 237 acatggaaccaggtgcagggattaacaagagtaggatcccagctttgcaatacattgtca 178
Query: 1997 gcatctttcaagctc 2011
| |||| |||||||
Sbjct: 177 ggatctaacaagctc 163
>gb|AW011134.1|AW011134 ST17B03 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST17B03, mRNA sequence
Length = 599
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 219 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 166
>gb|AW755068.1|AW755068 PC10D11 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC10D11, mRNA sequence
Length = 239
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 121 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 68
>gb|AW981611.1|AW981611 PC14F06 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC14F06, mRNA sequence
Length = 595
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 303 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 250
>gb|BF517514.1|BF517514 NXSI_025_A11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_025_A11 5' similar to Arabidopsis thaliana
sequence At5g21090 leucine-rich repeat protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 302
Score = 60.0 bits (30), Expect = 4e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattgt 1994
||||||||||| || || |||||||||||||| |||||||| || ||||| |||||||
Sbjct: 270 acatggaaccaggtgcagggattaacaagagtaggatcccagctttgcaatacattgt 213
>gb|BG275597.1|BG275597 NXSI_143_G06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_143_G06 5' similar to Arabidopsis thaliana
sequence At5g21090 leucine-rich repeat protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 491
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 257 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 204
>gb|BG317994.1|BG317994 NXPV_008_C03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_008_C03 5' similar to Arabidopsis
thaliana sequence At5g21090 leucine-rich repeat protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 566
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 285 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 232
>gb|BI077116.1|BI077116 NXPV_087_G11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_087_G11 5' similar to Arabidopsis
thaliana sequence At5g21090 leucine-rich repeat protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 403
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 285 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 232
>gb|BI643875.1|BI643875 NXPV_126_C10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_126_C10 5' similar to Arabidopsis
thaliana sequence At5g21090 leucine-rich repeat protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 417
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 116 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 63
>gb|BQ695540.1|BQ695540 NXPV_025_G04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_025_G04 5' similar to Arabidopsis
thaliana sequence At5g21090 leucine-rich repeat protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 672
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 430 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 377
>gb|BQ696803.1|BQ696803 NXPV_045_D08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_045_D08 5' similar to Arabidopsis
thaliana sequence At5g21090 leucine-rich repeat protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 569
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 285 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 232
>gb|CF389137.1|CF389137 RTDR2_13_C10.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_13_C10_A021 5', mRNA
sequence
Length = 661
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 226 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 173
>gb|CF393965.1|CF393965 RTDS2_2_F01.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_2_F01_A021 5', mRNA sequence
Length = 702
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 268 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 215
>gb|CF476467.1|CF476467 RTWW3_1_E07.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda
cDNA clone RTWW3_1_E07_A022 5', mRNA sequence
Length = 606
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 229 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 176
>gb|BX676964.1|BX676964 BX676964 RN Pinus pinaster cDNA clone RN15A10, mRNA sequence
Length = 480
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 271 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 218
>gb|BX681022.1|BX681022 BX681022 RS Pinus pinaster cDNA clone RS52B02, mRNA sequence
Length = 652
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 258 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 205
>gb|BX681862.1|BX681862 BX681862 RS Pinus pinaster cDNA clone RS65H08, mRNA sequence
Length = 537
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 222 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 169
>gb|CR392502.1|CR392502 CR392502 RN Pinus pinaster cDNA clone RN33D01, mRNA sequence
Length = 454
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 278 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 225
>gb|CO162164.1|CO162164 FLD1_33_C06.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_33_C06_A029 5', mRNA sequence
Length = 799
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 280 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 227
>gb|CO162471.1|CO162471 FLD1_35_B05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_35_B05_A029 5', mRNA sequence
Length = 796
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 282 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 229
>gb|CO164989.1|CO164989 FLD1_51_D01.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_51_D01_A029 5', mRNA sequence
Length = 804
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 274 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 221
>gb|CO169948.1|CO169948 NDL1_10_E04.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_10_E04_A029 5', mRNA sequence
Length = 696
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 302 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 249
>gb|CO198733.1|CO198733 GEO1_16_C10.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_16_C10_A029 3', mRNA sequence
Length = 741
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1940 tggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||| || || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 478 tggaaccaagtgcaaggattgacaagagtaggatcccaactctgcaaaacattg 531
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 247,245
Number of Sequences: 355925
Number of extensions: 247245
Number of successful extensions: 69996
Number of sequences better than 0.5: 118
Number of HSP's better than 0.5 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69805
Number of HSP's gapped (non-prelim): 186
length of query: 2136
length of database: 217,277,237
effective HSP length: 20
effective length of query: 2116
effective length of database: 210,158,737
effective search space: 444695887492
effective search space used: 444695887492
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)