BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3230315.2.1
(457 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF472834.1|CF472834 RTDS1_12_E06.b1_A015 Drought-stresse... 38 0.30
gb|CF479200.1|CF479200 RTWW3_24_E03.g1_A022 Well-watered lo... 38 0.30
gb|CO159211.1|CO159211 FLD1_12_E03.b1_A029 Root flooded Pin... 38 0.30
gb|CO159292.1|CO159292 FLD1_12_E03.g1_A029 Root flooded Pin... 38 0.30
gb|CO159712.1|CO159712 FLD1_15_G12.b1_A029 Root flooded Pin... 38 0.30
gb|CO160664.1|CO160664 FLD1_23_D07.b1_A029 Root flooded Pin... 38 0.30
gb|CO160722.1|CO160722 FLD1_23_D07.g1_A029 Root flooded Pin... 38 0.30
gb|CX713516.1|CX713516 RTPQ1_10_D02.b1_A032 Roots treated w... 38 0.30
gb|CX713517.1|CX713517 RTPQ1_10_D03.b1_A032 Roots treated w... 38 0.30
gb|DR013381.1|DR013381 HEAT1_19_B05.b1_A029 Root at 37 C fo... 38 0.30
gb|DR013467.1|DR013467 HEAT1_19_B05.g1_A029 Root at 37 C fo... 38 0.30
gb|DR015053.1|DR015053 STRS1_1_E12.b1_A034 Shoot tip pitch ... 38 0.30
gb|DR015139.1|DR015139 STRS1_1_E12.g1_A034 Shoot tip pitch ... 38 0.30
gb|DR019480.1|DR019480 STRS1_30_H01.b1_A034 Shoot tip pitch... 38 0.30
gb|DR019776.1|DR019776 STRS1_32_H01.b1_A034 Shoot tip pitch... 38 0.30
gb|DR070485.1|DR070485 RTDK1_13_D04.g1_A029 Roots, dark Pin... 38 0.30
gb|DR094467.1|DR094467 STRR1_14_F06.g1_A033 Stem Response R... 38 0.30
gb|DR102830.1|DR102830 STRR1_84_G03.b1_A033 Stem Response R... 38 0.30
gb|DR102882.1|DR102882 STRR1_84_G03.g1_A033 Stem Response R... 38 0.30
gb|DR168377.1|DR168377 RTPHOS1_25_B11.b1_A029 Roots minus p... 38 0.30
dbj|BD236383.1| Materials and method for modification of pl... 38 0.30
>gb|CF472834.1|CF472834 RTDS1_12_E06.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_12_E06_A015 3', mRNA sequence
Length = 592
Score = 38.2 bits (19), Expect = 0.30
Identities = 58/71 (81%)
Strand = Plus / Minus
Query: 282 gtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaag 341
||||| |||||||| || |||||||||| || |||||||| || ||| || ||||||
Sbjct: 261 gtgcccgcgccggggccgctgttcatgtattccccgtagtacagagtgctcagagcgaag 202
Query: 342 ctgccgttcca 352
||||| |||||
Sbjct: 201 ctgccattcca 191
>gb|CF479200.1|CF479200 RTWW3_24_E03.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_24_E03_A022 5', mRNA sequence
Length = 753
Score = 38.2 bits (19), Expect = 0.30
Identities = 58/71 (81%)
Strand = Plus / Minus
Query: 282 gtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaag 341
||||| |||||||| || |||||||||| || |||||||| || ||| || ||||||
Sbjct: 398 gtgcccgcgccggggccgctgttcatgtattccccgtagtacagagtgctcagagcgaag 339
Query: 342 ctgccgttcca 352
||||| |||||
Sbjct: 338 ctgccattcca 328
>gb|CO159211.1|CO159211 FLD1_12_E03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_12_E03_A029 3', mRNA sequence
Length = 659
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 300 gtgttcatgtactcgccgtagta 322
||||||| |||||||||||||||
Sbjct: 214 gtgttcaagtactcgccgtagta 192
>gb|CO159292.1|CO159292 FLD1_12_E03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_12_E03_A029 5', mRNA sequence
Length = 639
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 300 gtgttcatgtactcgccgtagta 322
||||||| |||||||||||||||
Sbjct: 419 gtgttcaagtactcgccgtagta 397
>gb|CO159712.1|CO159712 FLD1_15_G12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_15_G12_A029 3', mRNA sequence
Length = 764
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 300 gtgttcatgtactcgccgtagta 322
||||||| |||||||||||||||
Sbjct: 226 gtgttcaagtactcgccgtagta 204
>gb|CO160664.1|CO160664 FLD1_23_D07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_23_D07_A029 3', mRNA sequence
Length = 742
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 300 gtgttcatgtactcgccgtagta 322
||||||| |||||||||||||||
Sbjct: 171 gtgttcaagtactcgccgtagta 149
>gb|CO160722.1|CO160722 FLD1_23_D07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_23_D07_A029 5', mRNA sequence
Length = 752
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 300 gtgttcatgtactcgccgtagta 322
||||||| |||||||||||||||
Sbjct: 335 gtgttcaagtactcgccgtagta 313
>gb|CX713516.1|CX713516 RTPQ1_10_D02.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_10_D02_A032 3', mRNA sequence
Length = 577
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 224 gctggcctcggcggcgctggtga 246
|||||||||||||||| ||||||
Sbjct: 258 gctggcctcggcggcgttggtga 280
>gb|CX713517.1|CX713517 RTPQ1_10_D03.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_10_D03_A032 3', mRNA sequence
Length = 519
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 224 gctggcctcggcggcgctggtga 246
|||||||||||||||| ||||||
Sbjct: 207 gctggcctcggcggcgttggtga 229
>gb|DR013381.1|DR013381 HEAT1_19_B05.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_19_B05_A029 3', mRNA sequence
Length = 677
Score = 38.2 bits (19), Expect = 0.30
Identities = 58/71 (81%)
Strand = Plus / Minus
Query: 282 gtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaag 341
||||| |||||||| || |||||||||| || |||||||| || ||| || ||||||
Sbjct: 215 gtgcccgcgccggggccgctgttcatgtattccccgtagtacagagtgctcagagcgaag 156
Query: 342 ctgccgttcca 352
||||| |||||
Sbjct: 155 ctgccattcca 145
>gb|DR013467.1|DR013467 HEAT1_19_B05.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_19_B05_A029 5', mRNA sequence
Length = 741
Score = 38.2 bits (19), Expect = 0.30
Identities = 58/71 (81%)
Strand = Plus / Minus
Query: 282 gtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaag 341
||||| |||||||| || |||||||||| || |||||||| || ||| || ||||||
Sbjct: 580 gtgcccgcgccggggccgctgttcatgtattccccgtagtacagagtgctcagagcgaag 521
Query: 342 ctgccgttcca 352
||||| |||||
Sbjct: 520 ctgccattcca 510
>gb|DR015053.1|DR015053 STRS1_1_E12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_1_E12_A034 3', mRNA sequence
Length = 813
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 300 gtgttcatgtactcgccgtagta 322
||||||| |||||||||||||||
Sbjct: 245 gtgttcaagtactcgccgtagta 223
>gb|DR015139.1|DR015139 STRS1_1_E12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_1_E12_A034 5', mRNA sequence
Length = 893
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 300 gtgttcatgtactcgccgtagta 322
||||||| |||||||||||||||
Sbjct: 561 gtgttcaagtactcgccgtagta 539
>gb|DR019480.1|DR019480 STRS1_30_H01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_30_H01_A034 3', mRNA sequence
Length = 661
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 300 gtgttcatgtactcgccgtagta 322
||||||||||||||||| |||||
Sbjct: 283 gtgttcatgtactcgccatagta 261
>gb|DR019776.1|DR019776 STRS1_32_H01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_32_H01_A034 3', mRNA sequence
Length = 832
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 300 gtgttcatgtactcgccgtagta 322
||||||||||||||||| |||||
Sbjct: 454 gtgttcatgtactcgccatagta 432
>gb|DR070485.1|DR070485 RTDK1_13_D04.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_13_D04_A029 5', mRNA sequence
Length = 854
Score = 38.2 bits (19), Expect = 0.30
Identities = 58/71 (81%)
Strand = Plus / Minus
Query: 282 gtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaag 341
||||| |||||||| || |||||||||| || |||||||| || ||| || ||||||
Sbjct: 489 gtgcccgcgccggggccgctgttcatgtattccccgtagtacagagtgctcagagcgaag 430
Query: 342 ctgccgttcca 352
||||| |||||
Sbjct: 429 ctgccattcca 419
>gb|DR094467.1|DR094467 STRR1_14_F06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_14_F06_A033 5', mRNA sequence
Length = 867
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 300 gtgttcatgtactcgccgtagta 322
||||||||||||||||| |||||
Sbjct: 857 gtgttcatgtactcgccatagta 835
>gb|DR102830.1|DR102830 STRR1_84_G03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_84_G03_A033 3', mRNA sequence
Length = 719
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 300 gtgttcatgtactcgccgtagta 322
||||||| |||||||||||||||
Sbjct: 170 gtgttcaagtactcgccgtagta 148
>gb|DR102882.1|DR102882 STRR1_84_G03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_84_G03_A033 5', mRNA sequence
Length = 771
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 300 gtgttcatgtactcgccgtagta 322
||||||| |||||||||||||||
Sbjct: 633 gtgttcaagtactcgccgtagta 611
>gb|DR168377.1|DR168377 RTPHOS1_25_B11.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_25_B11_A029 3', mRNA sequence
Length = 629
Score = 38.2 bits (19), Expect = 0.30
Identities = 58/71 (81%)
Strand = Plus / Minus
Query: 282 gtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaag 341
||||| |||||||| || |||||||||| || |||||||| || ||| || ||||||
Sbjct: 299 gtgcccgcgccggggccgctgttcatgtattccccgtagtacagagtgctcagagcgaag 240
Query: 342 ctgccgttcca 352
||||| |||||
Sbjct: 239 ctgccattcca 229
>dbj|BD236383.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 318
Score = 38.2 bits (19), Expect = 0.30
Identities = 58/71 (81%)
Strand = Plus / Minus
Query: 282 gtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaag 341
||||| |||||||| || |||||||||| || |||||||| || ||| || ||||||
Sbjct: 221 gtgcccgcgccggggccgctgttcatgtattccccgtagtacagagtgctcagagcgaag 162
Query: 342 ctgccgttcca 352
||||| |||||
Sbjct: 161 ctgccattcca 151
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 39,257
Number of Sequences: 355925
Number of extensions: 39257
Number of successful extensions: 9735
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9712
Number of HSP's gapped (non-prelim): 23
length of query: 457
length of database: 217,277,237
effective HSP length: 19
effective length of query: 438
effective length of database: 210,514,662
effective search space: 92205421956
effective search space used: 92205421956
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)