BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3204680.2.2
         (534 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR055965.1|DR055965  RTCA1_27_E03.b1_A029 Roots minus cal...    44   0.006
gb|BX679195.1|BX679195  BX679195 RS Pinus pinaster cDNA clon...    38   0.35 
gb|DR070288.1|DR070288  RTDK1_12_H11.b1_A029 Roots, dark Pin...    38   0.35 

>gb|DR055965.1|DR055965 RTCA1_27_E03.b1_A029 Roots minus calcium Pinus taeda cDNA clone
           RTCA1_27_E03_A029 3', mRNA sequence
          Length = 787

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 245 agtggatttggacgtgagcttggaga 270
           ||||| ||||||||||||||||||||
Sbjct: 595 agtggttttggacgtgagcttggaga 620



>gb|BX679195.1|BX679195 BX679195 RS Pinus pinaster cDNA clone RS21C11, mRNA sequence
          Length = 376

 Score = 38.2 bits (19), Expect = 0.35
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 89  ctggccaatgatacacagt 107
           |||||||||||||||||||
Sbjct: 318 ctggccaatgatacacagt 300



>gb|DR070288.1|DR070288 RTDK1_12_H11.b1_A029 Roots, dark Pinus taeda cDNA clone
           RTDK1_12_H11_A029 3', mRNA sequence
          Length = 803

 Score = 38.2 bits (19), Expect = 0.35
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 113 ttagctggtgctgtaattt 131
           |||||||||||||||||||
Sbjct: 220 ttagctggtgctgtaattt 202



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 61,008
Number of Sequences: 355925
Number of extensions: 61008
Number of successful extensions: 15616
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15613
Number of HSP's gapped (non-prelim): 3
length of query: 534
length of database: 217,277,237
effective HSP length: 19
effective length of query: 515
effective length of database: 210,514,662
effective search space: 108415050930
effective search space used: 108415050930
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)