BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3204486.2.1
         (607 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CF395939.1|CF395939  RTDS2_19_B12.g1_A021 Drought-stresse...    46   0.002
gb|CO363274.1|CO363274  RTK1_8_E09.g1_A029 Roots minus potas...    38   0.40 

>gb|CF395939.1|CF395939 RTDS2_19_B12.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
           taeda cDNA clone RTDS2_19_B12_A021 5', mRNA sequence
          Length = 617

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 117 gggcagctggagttcttctacga 139
           |||||||||||||||||||||||
Sbjct: 533 gggcagctggagttcttctacga 555



>gb|CO363274.1|CO363274 RTK1_8_E09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
           RTK1_8_E09_A029 5', mRNA sequence
          Length = 703

 Score = 38.2 bits (19), Expect = 0.40
 Identities = 34/39 (87%)
 Strand = Plus / Minus

                                                  
Query: 126 gagttcttctacgaccaggcgcccgacgccatgaggagc 164
           |||||||| || |||||| | || |||||||||||||||
Sbjct: 479 gagttcttttatgaccagtcaccagacgccatgaggagc 441



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,334
Number of Sequences: 355925
Number of extensions: 50334
Number of successful extensions: 11783
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11780
Number of HSP's gapped (non-prelim): 3
length of query: 607
length of database: 217,277,237
effective HSP length: 19
effective length of query: 588
effective length of database: 210,514,662
effective search space: 123782621256
effective search space used: 123782621256
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)