BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198841.2.3
(792 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN611996.1|DN611996 EST965046 Subtracted pine embryo lib... 68 6e-010
gb|DN612064.1|DN612064 EST965114 Subtracted pine embryo lib... 68 6e-010
gb|DN612927.1|DN612927 EST965977 Subtracted pine embryo lib... 68 6e-010
gb|AW056617.1|AW056617 ST53F10 Pine TriplEx shoot tip libra... 66 2e-009
gb|CF664723.1|CF664723 RTCNT1_11_C09.g1_A029 Root control P... 66 2e-009
gb|CO166121.1|CO166121 FLD1_59_B03.g1_A029 Root flooded Pin... 66 2e-009
gb|CO197932.1|CO197932 GEO1_10_D09.b1_A029 Root gravitropis... 66 2e-009
gb|CO362646.1|CO362646 RTK1_5_A12.b1_A029 Roots minus potas... 66 2e-009
gb|CO365335.1|CO365335 RTK1_25_C04.b1_A029 Roots minus pota... 66 2e-009
gb|CV032506.1|CV032506 RTNACL1_8_D03.g1_A029 Roots plus add... 66 2e-009
gb|CX648134.1|CX648134 COLD1_26_F04.g1_A029 Root cold Pinus... 66 2e-009
gb|DN611005.1|DN611005 EST964055 Subtracted pine embryo lib... 66 2e-009
gb|DN612719.1|DN612719 EST965769 Subtracted pine embryo lib... 66 2e-009
gb|DN612750.1|DN612750 EST965800 Subtracted pine embryo lib... 66 2e-009
gb|DN614701.1|DN614701 EST967751 Subtracted pine embryo lib... 66 2e-009
gb|DR050795.1|DR050795 RTBOR1_25_E10.g1_A029 Roots plus add... 66 2e-009
gb|DR092029.1|DR092029 RTAL1_25_E06.g1_A029 Roots plus adde... 66 2e-009
gb|DR117514.1|DR117514 RTMG1_7_A07.g1_A029 Roots minus magn... 66 2e-009
gb|DR117521.1|DR117521 RTMG1_7_B02.g1_A029 Roots minus magn... 66 2e-009
gb|DT628106.1|DT628106 EST1156855 Subtracted pine embryo li... 66 2e-009
gb|DT628616.1|DT628616 EST1155186 Subtracted pine embryo li... 66 2e-009
gb|BE496399.1|BE496399 NXCI_017_D12_F NXCI (Nsf Xylem Compr... 58 6e-007
gb|CF390389.1|CF390389 RTDR2_19_E10.b1_A021 Loblolly pine r... 58 6e-007
gb|CF390785.1|CF390785 RTDR2_17_H10.g1_A021 Loblolly pine r... 58 6e-007
gb|CF672296.1|CF672296 RTCNT1_62_D06.g1_A029 Root control P... 58 6e-007
gb|CO162341.1|CO162341 FLD1_34_E09.g1_A029 Root flooded Pin... 58 6e-007
gb|CO162866.1|CO162866 FLD1_38_A12.b1_A029 Root flooded Pin... 58 6e-007
gb|CO162943.1|CO162943 FLD1_38_A12.g1_A029 Root flooded Pin... 58 6e-007
gb|CO164009.1|CO164009 FLD1_45_E07.b1_A029 Root flooded Pin... 58 6e-007
gb|CO164083.1|CO164083 FLD1_45_E07.g1_A029 Root flooded Pin... 58 6e-007
gb|CO164159.1|CO164159 FLD1_46_E06.b1_A029 Root flooded Pin... 58 6e-007
gb|CX649335.1|CX649335 COLD1_34_C03.g1_A029 Root cold Pinus... 58 6e-007
gb|CX649763.1|CX649763 COLD1_41_H01.b1_A029 Root cold Pinus... 58 6e-007
gb|CX714248.1|CX714248 RTPQ1_19_F08.g1_A032 Roots treated w... 58 6e-007
gb|DN614765.1|DN614765 EST967815 Subtracted pine embryo lib... 58 6e-007
gb|DR024659.1|DR024659 STRS1_66_C04.g1_A034 Shoot tip pitch... 58 6e-007
gb|DR089072.1|DR089072 RTAL1_6_H06.b1_A029 Roots plus added... 58 6e-007
gb|DR089158.1|DR089158 RTAL1_6_H06.g1_A029 Roots plus added... 58 6e-007
gb|DR691682.1|DR691682 EST1081769 Normalized pine embryo li... 58 6e-007
gb|DT636926.1|DT636926 EST1151857 Normalized pine embryo li... 58 6e-007
gb|CX652526.1|CX652526 COLD1_59_E01.g1_A029 Root cold Pinus... 56 2e-006
gb|DR072816.1|DR072816 RTDK1_28_F08.g1_A029 Roots, dark Pin... 56 2e-006
gb|DR745125.1|DR745125 RTCU1_27_E06.b1_A029 Roots plus adde... 56 2e-006
gb|BX251301.1|BX251301 BX251301 Pinus pinaster differenciat... 54 9e-006
gb|BQ702215.1|BQ702215 NXSI_126_C02_F NXSI (Nsf Xylem Side ... 54 9e-006
gb|CO164233.1|CO164233 FLD1_46_E06.g1_A029 Root flooded Pin... 54 9e-006
gb|DT631002.1|DT631002 EST1145933 Normalized pine embryo li... 50 1e-004
gb|CX715121.1|CX715121 RTPQ1_31_B11.g1_A032 Roots treated w... 48 6e-004
gb|CF671877.1|CF671877 RTCNT1_59_H03.g1_A029 Root control P... 42 0.034
gb|CO197792.1|CO197792 GEO1_9_D08.b1_A029 Root gravitropism... 42 0.034
>gb|DN611996.1|DN611996 EST965046 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAB939, mRNA sequence
Length = 441
Score = 67.9 bits (34), Expect = 6e-010
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 625 tctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggaga 684
|||| |||||||| || ||||| | |||||||| |||||||||| || || ||||| |
Sbjct: 37 tctcaaaacagcaataccactgtgatggatgtggtatatgtagaactgggggcagggata 96
Query: 685 atttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaatagtcatg 744
||||||||||||| | |||||||| ||||||||||| ||| | ||||| || |||||
Sbjct: 97 atttcttccactgctttaaatgtggttgttgctattcgattatgttgaaggattgtcatc 156
Query: 745 catgtgttgaaggggcgatgca 766
| ||||| ||||| || |||||
Sbjct: 157 cttgtgtagaaggagcaatgca 178
>gb|DN612064.1|DN612064 EST965114 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABA36, mRNA sequence
Length = 445
Score = 67.9 bits (34), Expect = 6e-010
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 625 tctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggaga 684
|||| |||||||| || ||||| | |||||||| |||||||||| || || ||||| |
Sbjct: 37 tctcaaaacagcaataccactgtgatggatgtggtatatgtagaactgggggcagggata 96
Query: 685 atttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaatagtcatg 744
||||||||||||| | |||||||| ||||||||||| ||| | ||||| || |||||
Sbjct: 97 atttcttccactgctttaaatgtggttgttgctattcgattatgttgaaggattgtcatc 156
Query: 745 catgtgttgaaggggcgatgca 766
| ||||| ||||| || |||||
Sbjct: 157 cttgtgtagaaggagcaatgca 178
>gb|DN612927.1|DN612927 EST965977 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABL91, mRNA sequence
Length = 448
Score = 67.9 bits (34), Expect = 6e-010
Identities = 115/142 (80%)
Strand = Plus / Minus
Query: 625 tctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggaga 684
|||| |||||||| || ||||| | |||||||| |||||||||| || || ||||| |
Sbjct: 412 tctcaaaacagcaataccactgtgatggatgtggtatatgtagaactgggggcagggata 353
Query: 685 atttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaatagtcatg 744
||||||||||||| | |||||||| ||||||||||| ||| | ||||| || |||||
Sbjct: 352 atttcttccactgctttaaatgtggttgttgctattcgattatgttgaaggattgtcatc 293
Query: 745 catgtgttgaaggggcgatgca 766
| ||||| ||||| || |||||
Sbjct: 292 cttgtgtagaaggagcaatgca 271
>gb|AW056617.1|AW056617 ST53F10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST53F10, mRNA sequence
Length = 375
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| |||||||| || ||||| | |||||||| |||||||||| || ||
Sbjct: 22 gatgatatctcaaaacagcaataccactgtgatggatgtggtatatgtagaactggtggc 81
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 82 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 141
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 142 tgtcatccttgtgtagaaggagcaatgca 170
>gb|CF664723.1|CF664723 RTCNT1_11_C09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_11_C09_A029 5', mRNA sequence
Length = 673
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| |||||||| || ||||| | |||||||| |||||||||| || ||
Sbjct: 268 gatgatatctcaaaacagcaataccactgtgatggatgtggtatatgtagaactggtggc 327
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 328 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 387
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 388 tgtcatccttgtgtagaaggagcaatgca 416
>gb|CO166121.1|CO166121 FLD1_59_B03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_B03_A029 5', mRNA sequence
Length = 835
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| |||||||| || ||||| | |||||||| |||||||||| || ||
Sbjct: 133 gatgatatctcaaaacagcaataccactgtgatggatgtggtatatgtagaactggtggc 192
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 193 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 252
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 253 tgtcatccttgtgtagaaggagcaatgca 281
>gb|CO197932.1|CO197932 GEO1_10_D09.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_10_D09_A029 3', mRNA sequence
Length = 733
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| |||||||| || ||||| | |||||||| |||||||||| || ||
Sbjct: 702 gatgatatctcaaaacagcaataccactgtgatggatgtggtatatgtagaactggtggc 643
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 642 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 583
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 582 tgtcatccttgtgtagaaggagcaatgca 554
>gb|CO362646.1|CO362646 RTK1_5_A12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_5_A12_A029 3', mRNA sequence
Length = 809
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| |||||||| || ||||| | |||||||| |||||||||| || ||
Sbjct: 241 gatgatatctcaaaacagcaataccactgtgatggatgtggtatatgtagaactggtggc 182
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 181 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 122
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 121 tgtcatccttgtgtagaaggagcaatgca 93
>gb|CO365335.1|CO365335 RTK1_25_C04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_C04_A029 3', mRNA sequence
Length = 827
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| |||||||| || ||||| | |||||||| |||||||||| || ||
Sbjct: 188 gatgatatctcaaaacagcaataccactgtgatggatgtggtatatgtagaactggtggc 129
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 128 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 69
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 68 tgtcatccttgtgtagaaggagcaatgca 40
>gb|CV032506.1|CV032506 RTNACL1_8_D03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_8_D03_A029 5', mRNA sequence
Length = 388
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| |||||||| || ||||| | |||||||| |||||||||| || ||
Sbjct: 111 gatgatatctcaaaacagcaataccactgtgatggatgtggtatatgtagaactggtggc 170
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 171 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 230
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 231 tgtcatccttgtgtagaaggagcaatgca 259
>gb|CX648134.1|CX648134 COLD1_26_F04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_26_F04_A029 5', mRNA sequence
Length = 797
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| |||||||| || ||||| | |||||||| |||||||||| || ||
Sbjct: 456 gatgatatctcaaaacagcaataccactgtgatggatgtggtatatgtagaactggtggc 515
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 516 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 575
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 576 tgtcatccttgtgtagaaggagcaatgca 604
>gb|DN611005.1|DN611005 EST964055 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAW63, mRNA sequence
Length = 472
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| |||||||| || ||||| | |||||||| |||||||||| || ||
Sbjct: 30 gatgatatctcaaaacagcaataccactgtgatggatgtggtatatgtagaactggtggc 89
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 90 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 149
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 150 tgtcatccttgtgtagaaggagcaatgca 178
>gb|DN612719.1|DN612719 EST965769 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABJ25, mRNA sequence
Length = 448
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| |||||||| || ||||| | |||||||| |||||||||| || ||
Sbjct: 419 gatgatatctcaaaacagcaataccactgtgatggatgtggtatatgtagaactggtggc 360
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 359 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 300
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 299 tgtcatccttgtgtagaaggagcaatgca 271
>gb|DN612750.1|DN612750 EST965800 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABJ58, mRNA sequence
Length = 605
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| |||||||| || ||||| | |||||||| |||||||||| || ||
Sbjct: 403 gatgatatctcaaaacagcaataccactgtgatggatgtggtatatgtagaactggtggc 462
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 463 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 522
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 523 tgtcatccttgtgtagaaggagcaatgca 551
>gb|DN614701.1|DN614701 EST967751 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAC717, mRNA sequence
Length = 235
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| |||||||| || ||||| | |||||||| |||||||||| || ||
Sbjct: 206 gatgatatctcaaaacagcaataccactgtgatggatgtggtatatgtagaactggtggc 147
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 146 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 87
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 86 tgtcatccttgtgtagaaggagcaatgca 58
>gb|DR050795.1|DR050795 RTBOR1_25_E10.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_E10_A029 5', mRNA sequence
Length = 833
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| |||||||| || ||||| | |||||||| |||||||||| || ||
Sbjct: 53 gatgatatctcaaaacagcaataccactgtgatggatgtggtatatgtagaactggtggc 112
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 113 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 172
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 173 tgtcatccttgtgtagaaggagcaatgca 201
>gb|DR092029.1|DR092029 RTAL1_25_E06.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_25_E06_A029 5', mRNA sequence
Length = 408
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| |||||||| || ||||| | |||||||| |||||||||| || ||
Sbjct: 164 gatgatatctcaaaacagcaataccactgtgatggatgtggtatatgtagaactggtggc 223
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 224 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 283
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 284 tgtcatccttgtgtagaaggagcaatgca 312
>gb|DR117514.1|DR117514 RTMG1_7_A07.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_A07_A029 5', mRNA sequence
Length = 860
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| |||||||| || ||||| | |||||||| |||||||||| || ||
Sbjct: 17 gatgatatctcaaaacagcaataccactgtgatggatgtggtatatgtagaactggtggc 76
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 77 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 136
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 137 tgtcatccttgtgtagaaggagcaatgca 165
>gb|DR117521.1|DR117521 RTMG1_7_B02.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_B02_A029 5', mRNA sequence
Length = 783
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| |||||||| || ||||| | |||||||| |||||||||| || ||
Sbjct: 543 gatgatatctcaaaacagcaataccactgtgatggatgtggtatatgtagaactggtggc 602
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 603 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 662
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 663 tgtcatccttgtgtagaaggagcaatgca 691
>gb|DT628106.1|DT628106 EST1156855 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCU32 5' end, mRNA sequence
Length = 448
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| |||||||| || ||||| | |||||||| |||||||||| || ||
Sbjct: 419 gatgatatctcaaaacagcaataccactgtgatggatgtggtatatgtagaactggtggc 360
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 359 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 300
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 299 tgtcatccttgtgtagaaggagcaatgca 271
>gb|DT628616.1|DT628616 EST1155186 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD002 5' end, mRNA sequence
Length = 602
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| |||||||| || ||||| | |||||||| |||||||||| || ||
Sbjct: 206 gatgatatctcaaaacagcaataccactgtgatggatgtggtatatgtagaactggtggc 147
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 146 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 87
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 86 tgtcatccttgtgtagaaggagcaatgca 58
>gb|BE496399.1|BE496399 NXCI_017_D12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_017_D12 5' similar to Arabidopsis
thaliana sequence At5g22920 PGPD14 protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 575
Score = 58.0 bits (29), Expect = 6e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 630 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttc 689
|||||||| || ||||| ||||||||||||| || |||| || || | || ||||||
Sbjct: 124 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 183
Query: 690 ttccactgttcaaaatgtggatgttgcta 718
|||||||||| |||||||||||||||||
Sbjct: 184 ttccactgttataaatgtggatgttgcta 212
>gb|CF390389.1|CF390389 RTDR2_19_E10.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_19_E10_A021 3', mRNA
sequence
Length = 667
Score = 58.0 bits (29), Expect = 6e-007
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 630 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttc 689
|||||||| || ||||| ||||||||||||| || |||| || || | || ||||||
Sbjct: 233 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 174
Query: 690 ttccactgttcaaaatgtggatgttgcta 718
|||||||||| |||||||||||||||||
Sbjct: 173 ttccactgttataaatgtggatgttgcta 145
>gb|CF390785.1|CF390785 RTDR2_17_H10.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_17_H10_A021 5', mRNA
sequence
Length = 798
Score = 58.0 bits (29), Expect = 6e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 630 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttc 689
|||||||| || ||||| ||||||||||||| || |||| || || | || ||||||
Sbjct: 370 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 429
Query: 690 ttccactgttcaaaatgtggatgttgcta 718
|||||||||| |||||||||||||||||
Sbjct: 430 ttccactgttataaatgtggatgttgcta 458
>gb|CF672296.1|CF672296 RTCNT1_62_D06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_62_D06_A029 5', mRNA sequence
Length = 765
Score = 58.0 bits (29), Expect = 6e-007
Identities = 110/137 (80%)
Strand = Plus / Plus
Query: 630 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttc 689
|||||||| || ||||| | |||||||| |||||||||| || || ||||| ||||||
Sbjct: 1 aaacagcaataccactgtgatggatgtggtatatgtagaactggtggcagggataatttc 60
Query: 690 ttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaatagtcatgcatgt 749
|||||||| | |||||||| ||||| ||||| ||| | ||||| || ||||| | |||
Sbjct: 61 ttccactgctttaaatgtggttgttgttattcgattatgttgaaggattgtcatccttgt 120
Query: 750 gttgaaggggcgatgca 766
|| ||||| || |||||
Sbjct: 121 gtagaaggagcaatgca 137
>gb|CO162341.1|CO162341 FLD1_34_E09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_E09_A029 5', mRNA sequence
Length = 858
Score = 58.0 bits (29), Expect = 6e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 630 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttc 689
|||||||| || ||||| ||||||||||||| || |||| || || | || ||||||
Sbjct: 506 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 565
Query: 690 ttccactgttcaaaatgtggatgttgcta 718
|||||||||| |||||||||||||||||
Sbjct: 566 ttccactgttataaatgtggatgttgcta 594
>gb|CO162866.1|CO162866 FLD1_38_A12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_38_A12_A029 3', mRNA sequence
Length = 843
Score = 58.0 bits (29), Expect = 6e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 630 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttc 689
|||||||| || ||||| ||||||||||||| || |||| || || | || ||||||
Sbjct: 2 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 61
Query: 690 ttccactgttcaaaatgtggatgttgcta 718
|||||||||| |||||||||||||||||
Sbjct: 62 ttccactgttataaatgtggatgttgcta 90
>gb|CO162943.1|CO162943 FLD1_38_A12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_38_A12_A029 5', mRNA sequence
Length = 804
Score = 58.0 bits (29), Expect = 6e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 630 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttc 689
|||||||| || ||||| ||||||||||||| || |||| || || | || ||||||
Sbjct: 492 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 551
Query: 690 ttccactgttcaaaatgtggatgttgcta 718
|||||||||| |||||||||||||||||
Sbjct: 552 ttccactgttataaatgtggatgttgcta 580
>gb|CO164009.1|CO164009 FLD1_45_E07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_E07_A029 3', mRNA sequence
Length = 909
Score = 58.0 bits (29), Expect = 6e-007
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 630 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttc 689
|||||||| || ||||| ||||||||||||| || |||| || || | || ||||||
Sbjct: 409 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 350
Query: 690 ttccactgttcaaaatgtggatgttgcta 718
|||||||||| |||||||||||||||||
Sbjct: 349 ttccactgttataaatgtggatgttgcta 321
>gb|CO164083.1|CO164083 FLD1_45_E07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_E07_A029 5', mRNA sequence
Length = 886
Score = 58.0 bits (29), Expect = 6e-007
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 630 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttc 689
|||||||| || ||||| ||||||||||||| || |||| || || | || ||||||
Sbjct: 884 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 825
Query: 690 ttccactgttcaaaatgtggatgttgcta 718
|||||||||| |||||||||||||||||
Sbjct: 824 ttccactgttataaatgtggatgttgcta 796
>gb|CO164159.1|CO164159 FLD1_46_E06.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_46_E06_A029 3', mRNA sequence
Length = 911
Score = 58.0 bits (29), Expect = 6e-007
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 630 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttc 689
|||||||| || ||||| ||||||||||||| || |||| || || | || ||||||
Sbjct: 411 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 352
Query: 690 ttccactgttcaaaatgtggatgttgcta 718
|||||||||| |||||||||||||||||
Sbjct: 351 ttccactgttataaatgtggatgttgcta 323
>gb|CX649335.1|CX649335 COLD1_34_C03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_34_C03_A029 5', mRNA sequence
Length = 699
Score = 58.0 bits (29), Expect = 6e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 630 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttc 689
|||||||| || ||||| ||||||||||||| || |||| || || | || ||||||
Sbjct: 244 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 303
Query: 690 ttccactgttcaaaatgtggatgttgcta 718
|||||||||| |||||||||||||||||
Sbjct: 304 ttccactgttataaatgtggatgttgcta 332
>gb|CX649763.1|CX649763 COLD1_41_H01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_H01_A029 3', mRNA sequence
Length = 753
Score = 58.0 bits (29), Expect = 6e-007
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 630 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttc 689
|||||||| || ||||| ||||||||||||| || |||| || || | || ||||||
Sbjct: 689 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 630
Query: 690 ttccactgttcaaaatgtggatgttgcta 718
|||||||||| |||||||||||||||||
Sbjct: 629 ttccactgttataaatgtggatgttgcta 601
>gb|CX714248.1|CX714248 RTPQ1_19_F08.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_19_F08_A032 5', mRNA sequence
Length = 693
Score = 58.0 bits (29), Expect = 6e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 630 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttc 689
|||||||| || ||||| ||||||||||||| || |||| || || | || ||||||
Sbjct: 392 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 451
Query: 690 ttccactgttcaaaatgtggatgttgcta 718
|||||||||| |||||||||||||||||
Sbjct: 452 ttccactgttataaatgtggatgttgcta 480
>gb|DN614765.1|DN614765 EST967815 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAC788, mRNA sequence
Length = 448
Score = 58.0 bits (29), Expect = 6e-007
Identities = 119/149 (79%)
Strand = Plus / Plus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| |||||| | || ||||| | |||||||| |||||||||| || ||
Sbjct: 30 gatgatatctcaaaacagtaataccactgtgatggatgtggtatatgtagaactggtggc 89
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 90 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 149
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 150 tgtcatccttgtgtagaaggagcaatgca 178
>gb|DR024659.1|DR024659 STRS1_66_C04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_66_C04_A034 5', mRNA sequence
Length = 643
Score = 58.0 bits (29), Expect = 6e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 630 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttc 689
|||||||| || ||||| ||||||||||||| || |||| || || | || ||||||
Sbjct: 78 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 137
Query: 690 ttccactgttcaaaatgtggatgttgcta 718
|||||||||| |||||||||||||||||
Sbjct: 138 ttccactgttataaatgtggatgttgcta 166
>gb|DR089072.1|DR089072 RTAL1_6_H06.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_6_H06_A029 3', mRNA sequence
Length = 844
Score = 58.0 bits (29), Expect = 6e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 630 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttc 689
|||||||| || ||||| ||||||||||||| || |||| || || | || ||||||
Sbjct: 31 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 90
Query: 690 ttccactgttcaaaatgtggatgttgcta 718
|||||||||| |||||||||||||||||
Sbjct: 91 ttccactgttataaatgtggatgttgcta 119
>gb|DR089158.1|DR089158 RTAL1_6_H06.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_6_H06_A029 5', mRNA sequence
Length = 749
Score = 58.0 bits (29), Expect = 6e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 630 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttc 689
|||||||| || ||||| ||||||||||||| || |||| || || | || ||||||
Sbjct: 200 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 259
Query: 690 ttccactgttcaaaatgtggatgttgcta 718
|||||||||| |||||||||||||||||
Sbjct: 260 ttccactgttataaatgtggatgttgcta 288
>gb|DR691682.1|DR691682 EST1081769 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADB54 3' end, mRNA sequence
Length = 582
Score = 58.0 bits (29), Expect = 6e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 630 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttc 689
|||||||| || ||||| ||||||||||||| || |||| || || | || ||||||
Sbjct: 304 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 363
Query: 690 ttccactgttcaaaatgtggatgttgcta 718
|||||||||| |||||||||||||||||
Sbjct: 364 ttccactgttataaatgtggatgttgcta 392
>gb|DT636926.1|DT636926 EST1151857 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGX65 3' end, mRNA sequence
Length = 844
Score = 58.0 bits (29), Expect = 6e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 630 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttc 689
|||||||| || ||||| ||||||||||||| || |||| || || | || ||||||
Sbjct: 267 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 326
Query: 690 ttccactgttcaaaatgtggatgttgcta 718
|||||||||| |||||||||||||||||
Sbjct: 327 ttccactgttataaatgtggatgttgcta 355
>gb|CX652526.1|CX652526 COLD1_59_E01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_59_E01_A029 5', mRNA sequence
Length = 741
Score = 56.0 bits (28), Expect = 2e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 651 ggatgtggaatatgtagaatcggagggagggagaatttcttccactgttcaaaatgtgga 710
|||||||| |||||||||| || || ||||| |||||||||||||| | ||||||||
Sbjct: 8 ggatgtggtatatgtagaactggtggcagggataatttcttccactgctttaaatgtggt 67
Query: 711 tgttgctattcaattgcgctgaagaatagtcatgcatgtgttgaaggggcgatgca 766
||||| ||||| ||| | ||||| || ||||| | ||||| ||||| || |||||
Sbjct: 68 tgttgttattcgattatgttgaaggattgtcatccttgtgtagaaggagcaatgca 123
>gb|DR072816.1|DR072816 RTDK1_28_F08.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_28_F08_A029 5', mRNA sequence
Length = 527
Score = 56.0 bits (28), Expect = 2e-006
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 631 aacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttct 690
||||||| || ||||| ||||||||||||| || |||| || || | || |||||||
Sbjct: 440 aacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttct 499
Query: 691 tccactgttcaaaatgtggatgttgcta 718
||||||||| |||||||||||||||||
Sbjct: 500 tccactgttataaatgtggatgttgcta 527
>gb|DR745125.1|DR745125 RTCU1_27_E06.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_27_E06_A029 3', mRNA sequence
Length = 707
Score = 56.0 bits (28), Expect = 2e-006
Identities = 94/116 (81%)
Strand = Plus / Minus
Query: 651 ggatgtggaatatgtagaatcggagggagggagaatttcttccactgttcaaaatgtgga 710
|||||||| |||||||||| || || ||||| |||||||||||||| | ||||||||
Sbjct: 697 ggatgtggtatatgtagaactggtggcagggataatttcttccactgctttaaatgtggt 638
Query: 711 tgttgctattcaattgcgctgaagaatagtcatgcatgtgttgaaggggcgatgca 766
||||| ||||| ||| | ||||| || ||||| | ||||| ||||| || |||||
Sbjct: 637 tgttgttattcgattatgttgaaggattgtcatccttgtgtagaaggagcaatgca 582
>gb|BX251301.1|BX251301 BX251301 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP047H07, mRNA sequence
Length = 675
Score = 54.0 bits (27), Expect = 9e-006
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 684 aatttcttccactgttcaaaatgtggatgttgcta 718
|||||||||||||||| |||||||||||||||||
Sbjct: 505 aatttcttccactgttataaatgtggatgttgcta 539
>gb|BQ702215.1|BQ702215 NXSI_126_C02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_126_C02 5' similar to Arabidopsis thaliana
sequence At5g22920 PGPD14 protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 543
Score = 54.0 bits (27), Expect = 9e-006
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| |||||||| || ||||| | ||||||| |||||||||| || ||
Sbjct: 373 gatgatatctcaaaacagcaataccactgtgatggatgtgntatatgtagaactggtggc 432
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttg 715
||||| |||||||||||||| | |||||||| |||||
Sbjct: 433 agggataatttcttccactgctttaaatgtggttgttg 470
>gb|CO164233.1|CO164233 FLD1_46_E06.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_46_E06_A029 5', mRNA sequence
Length = 843
Score = 54.0 bits (27), Expect = 9e-006
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 684 aatttcttccactgttcaaaatgtggatgttgcta 718
|||||||||||||||| |||||||||||||||||
Sbjct: 828 aatttcttccactgttataaatgtggatgttgcta 794
>gb|DT631002.1|DT631002 EST1145933 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF376 3' end, mRNA sequence
Length = 775
Score = 50.1 bits (25), Expect = 1e-004
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 630 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttc 689
|||||||| || ||||| ||||||||||||| || |||| || || | || ||||||
Sbjct: 610 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 669
Query: 690 ttccactgttcaaaatgtggatgttgcta 718
||||||||| |||||||||||||||||
Sbjct: 670 ttccactgtcataaatgtggatgttgcta 698
>gb|CX715121.1|CX715121 RTPQ1_31_B11.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_31_B11_A032 5', mRNA sequence
Length = 540
Score = 48.1 bits (24), Expect = 6e-004
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 618 gatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggg 677
|||||| |||| ||||||| || ||||| | |||||||| |||||||||| || ||
Sbjct: 454 gatgatatctcagaacagcaataccactgtgatggatgtggtatatgtagaactggtggc 513
Query: 678 agggagaatttcttccactg 697
||||| ||||||||||||||
Sbjct: 514 agggataatttcttccactg 533
>gb|CF671877.1|CF671877 RTCNT1_59_H03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_59_H03_A029 5', mRNA sequence
Length = 696
Score = 42.1 bits (21), Expect = 0.034
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 2 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 61
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 62 tgtcatccttgtgtagaaggagcaatgca 90
>gb|CO197792.1|CO197792 GEO1_9_D08.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_9_D08_A029 3', mRNA sequence
Length = 747
Score = 42.1 bits (21), Expect = 0.034
Identities = 72/89 (80%)
Strand = Plus / Minus
Query: 678 agggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaat 737
||||| |||||||||||||| | |||||||| ||||| ||||| ||| | ||||| ||
Sbjct: 734 agggataatttcttccactgctttaaatgtggttgttgttattcgattatgttgaaggat 675
Query: 738 agtcatgcatgtgttgaaggggcgatgca 766
||||| | ||||| ||||| || |||||
Sbjct: 674 tgtcatccttgtgtagaaggagcaatgca 646
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 90,062
Number of Sequences: 355925
Number of extensions: 90062
Number of successful extensions: 24662
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24577
Number of HSP's gapped (non-prelim): 66
length of query: 792
length of database: 217,277,237
effective HSP length: 19
effective length of query: 773
effective length of database: 210,514,662
effective search space: 162727833726
effective search space used: 162727833726
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)