BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198841.2.2
(602 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN611996.1|DN611996 EST965046 Subtracted pine embryo lib... 58 4e-007
gb|DN612064.1|DN612064 EST965114 Subtracted pine embryo lib... 58 4e-007
gb|DN612927.1|DN612927 EST965977 Subtracted pine embryo lib... 58 4e-007
gb|BE496399.1|BE496399 NXCI_017_D12_F NXCI (Nsf Xylem Compr... 42 0.026
gb|CF390389.1|CF390389 RTDR2_19_E10.b1_A021 Loblolly pine r... 42 0.026
gb|CF390785.1|CF390785 RTDR2_17_H10.g1_A021 Loblolly pine r... 42 0.026
gb|CO162341.1|CO162341 FLD1_34_E09.g1_A029 Root flooded Pin... 42 0.026
gb|CO162866.1|CO162866 FLD1_38_A12.b1_A029 Root flooded Pin... 42 0.026
gb|CO162943.1|CO162943 FLD1_38_A12.g1_A029 Root flooded Pin... 42 0.026
gb|CO164009.1|CO164009 FLD1_45_E07.b1_A029 Root flooded Pin... 42 0.026
gb|CO164083.1|CO164083 FLD1_45_E07.g1_A029 Root flooded Pin... 42 0.026
gb|CO164159.1|CO164159 FLD1_46_E06.b1_A029 Root flooded Pin... 42 0.026
gb|CX649335.1|CX649335 COLD1_34_C03.g1_A029 Root cold Pinus... 42 0.026
gb|CX649763.1|CX649763 COLD1_41_H01.b1_A029 Root cold Pinus... 42 0.026
gb|CX714248.1|CX714248 RTPQ1_19_F08.g1_A032 Roots treated w... 42 0.026
gb|DR024659.1|DR024659 STRS1_66_C04.g1_A034 Shoot tip pitch... 42 0.026
gb|DR089072.1|DR089072 RTAL1_6_H06.b1_A029 Roots plus added... 42 0.026
gb|DR089158.1|DR089158 RTAL1_6_H06.g1_A029 Roots plus added... 42 0.026
gb|DR691682.1|DR691682 EST1081769 Normalized pine embryo li... 42 0.026
gb|DT636926.1|DT636926 EST1151857 Normalized pine embryo li... 42 0.026
gb|DR072816.1|DR072816 RTDK1_28_F08.g1_A029 Roots, dark Pin... 40 0.10
gb|DT631002.1|DT631002 EST1145933 Normalized pine embryo li... 40 0.10
gb|BE187458.1|BE187458 NXNV_98_E04_F Nsf Xylem Normal wood ... 38 0.40
>gb|DN611996.1|DN611996 EST965046 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAB939, mRNA sequence
Length = 441
Score = 58.0 bits (29), Expect = 4e-007
Identities = 81/97 (83%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 493 tctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggaga 552
|||| |||||||| || ||||| | |||||||| |||||||||| || |||||||| |
Sbjct: 37 tctcaaaacagcaataccactgtgatggatgtggtatatgtagaactgggggcagggata 96
Query: 553 attccttccactg-ttcaaaagtggatgttgctattc 588
||| ||||||||| || ||| |||| |||||||||||
Sbjct: 97 atttcttccactgctttaaatgtggttgttgctattc 133
>gb|DN612064.1|DN612064 EST965114 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABA36, mRNA sequence
Length = 445
Score = 58.0 bits (29), Expect = 4e-007
Identities = 81/97 (83%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 493 tctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggaga 552
|||| |||||||| || ||||| | |||||||| |||||||||| || |||||||| |
Sbjct: 37 tctcaaaacagcaataccactgtgatggatgtggtatatgtagaactgggggcagggata 96
Query: 553 attccttccactg-ttcaaaagtggatgttgctattc 588
||| ||||||||| || ||| |||| |||||||||||
Sbjct: 97 atttcttccactgctttaaatgtggttgttgctattc 133
>gb|DN612927.1|DN612927 EST965977 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABL91, mRNA sequence
Length = 448
Score = 58.0 bits (29), Expect = 4e-007
Identities = 81/97 (83%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 493 tctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggaga 552
|||| |||||||| || ||||| | |||||||| |||||||||| || |||||||| |
Sbjct: 412 tctcaaaacagcaataccactgtgatggatgtggtatatgtagaactgggggcagggata 353
Query: 553 attccttccactg-ttcaaaagtggatgttgctattc 588
||| ||||||||| || ||| |||| |||||||||||
Sbjct: 352 atttcttccactgctttaaatgtggttgttgctattc 316
>gb|BE496399.1|BE496399 NXCI_017_D12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_017_D12 5' similar to Arabidopsis
thaliana sequence At5g22920 PGPD14 protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 575
Score = 42.1 bits (21), Expect = 0.026
Identities = 118/149 (79%), Gaps = 1/149 (0%)
Strand = Plus / Plus
Query: 438 ggtgtttgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctct 497
|||||||| ||||| ||||||||||||| ||||| |||| || || || | |||
Sbjct: 64 ggtgtttgtatgggaaagtacttctgtgaaaaatgcaatttctttgatgacgaggactca 123
Query: 498 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggagaattcc 557
|||||||| || ||||| ||||||||||||| || |||| || |||| || |||| |
Sbjct: 124 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 183
Query: 558 ttccactgtt-caaaagtggatgttgcta 585
|||||||||| ||| |||||||||||||
Sbjct: 184 ttccactgttataaatgtggatgttgcta 212
>gb|CF390389.1|CF390389 RTDR2_19_E10.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_19_E10_A021 3', mRNA
sequence
Length = 667
Score = 42.1 bits (21), Expect = 0.026
Identities = 118/149 (79%), Gaps = 1/149 (0%)
Strand = Plus / Minus
Query: 438 ggtgtttgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctct 497
|||||||| ||||| ||||||||||||| ||||| |||| || || || | |||
Sbjct: 293 ggtgtttgtatgggaaagtacttctgtgaaaaatgcaatttctttgatgacgaggactca 234
Query: 498 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggagaattcc 557
|||||||| || ||||| ||||||||||||| || |||| || |||| || |||| |
Sbjct: 233 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 174
Query: 558 ttccactgtt-caaaagtggatgttgcta 585
|||||||||| ||| |||||||||||||
Sbjct: 173 ttccactgttataaatgtggatgttgcta 145
>gb|CF390785.1|CF390785 RTDR2_17_H10.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_17_H10_A021 5', mRNA
sequence
Length = 798
Score = 42.1 bits (21), Expect = 0.026
Identities = 118/149 (79%), Gaps = 1/149 (0%)
Strand = Plus / Plus
Query: 438 ggtgtttgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctct 497
|||||||| ||||| ||||||||||||| ||||| |||| || || || | |||
Sbjct: 310 ggtgtttgtatgggaaagtacttctgtgaaaaatgcaatttctttgatgacgaggactca 369
Query: 498 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggagaattcc 557
|||||||| || ||||| ||||||||||||| || |||| || |||| || |||| |
Sbjct: 370 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 429
Query: 558 ttccactgtt-caaaagtggatgttgcta 585
|||||||||| ||| |||||||||||||
Sbjct: 430 ttccactgttataaatgtggatgttgcta 458
>gb|CO162341.1|CO162341 FLD1_34_E09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_E09_A029 5', mRNA sequence
Length = 858
Score = 42.1 bits (21), Expect = 0.026
Identities = 73/89 (82%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 498 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggagaattcc 557
|||||||| || ||||| ||||||||||||| || |||| || |||| || |||| |
Sbjct: 506 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 565
Query: 558 ttccactgtt-caaaagtggatgttgcta 585
|||||||||| ||| |||||||||||||
Sbjct: 566 ttccactgttataaatgtggatgttgcta 594
>gb|CO162866.1|CO162866 FLD1_38_A12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_38_A12_A029 3', mRNA sequence
Length = 843
Score = 42.1 bits (21), Expect = 0.026
Identities = 73/89 (82%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 498 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggagaattcc 557
|||||||| || ||||| ||||||||||||| || |||| || |||| || |||| |
Sbjct: 2 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 61
Query: 558 ttccactgtt-caaaagtggatgttgcta 585
|||||||||| ||| |||||||||||||
Sbjct: 62 ttccactgttataaatgtggatgttgcta 90
>gb|CO162943.1|CO162943 FLD1_38_A12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_38_A12_A029 5', mRNA sequence
Length = 804
Score = 42.1 bits (21), Expect = 0.026
Identities = 118/149 (79%), Gaps = 1/149 (0%)
Strand = Plus / Plus
Query: 438 ggtgtttgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctct 497
|||||||| ||||| ||||||||||||| ||||| |||| || || || | |||
Sbjct: 432 ggtgtttgtatgggaaagtacttctgtgaaaaatgcaatttctttgatgacgaggactca 491
Query: 498 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggagaattcc 557
|||||||| || ||||| ||||||||||||| || |||| || |||| || |||| |
Sbjct: 492 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 551
Query: 558 ttccactgtt-caaaagtggatgttgcta 585
|||||||||| ||| |||||||||||||
Sbjct: 552 ttccactgttataaatgtggatgttgcta 580
>gb|CO164009.1|CO164009 FLD1_45_E07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_E07_A029 3', mRNA sequence
Length = 909
Score = 42.1 bits (21), Expect = 0.026
Identities = 118/149 (79%), Gaps = 1/149 (0%)
Strand = Plus / Minus
Query: 438 ggtgtttgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctct 497
|||||||| ||||| ||||||||||||| ||||| |||| || || || | |||
Sbjct: 469 ggtgtttgtatgggaaagtacttctgtgaaaaatgcaatttctttgatgacgaggactca 410
Query: 498 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggagaattcc 557
|||||||| || ||||| ||||||||||||| || |||| || |||| || |||| |
Sbjct: 409 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 350
Query: 558 ttccactgtt-caaaagtggatgttgcta 585
|||||||||| ||| |||||||||||||
Sbjct: 349 ttccactgttataaatgtggatgttgcta 321
>gb|CO164083.1|CO164083 FLD1_45_E07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_E07_A029 5', mRNA sequence
Length = 886
Score = 42.1 bits (21), Expect = 0.026
Identities = 73/89 (82%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 498 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggagaattcc 557
|||||||| || ||||| ||||||||||||| || |||| || |||| || |||| |
Sbjct: 884 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 825
Query: 558 ttccactgtt-caaaagtggatgttgcta 585
|||||||||| ||| |||||||||||||
Sbjct: 824 ttccactgttataaatgtggatgttgcta 796
>gb|CO164159.1|CO164159 FLD1_46_E06.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_46_E06_A029 3', mRNA sequence
Length = 911
Score = 42.1 bits (21), Expect = 0.026
Identities = 118/149 (79%), Gaps = 1/149 (0%)
Strand = Plus / Minus
Query: 438 ggtgtttgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctct 497
|||||||| ||||| ||||||||||||| ||||| |||| || || || | |||
Sbjct: 471 ggtgtttgtatgggaaagtacttctgtgaaaaatgcaatttctttgatgacgaggactca 412
Query: 498 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggagaattcc 557
|||||||| || ||||| ||||||||||||| || |||| || |||| || |||| |
Sbjct: 411 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 352
Query: 558 ttccactgtt-caaaagtggatgttgcta 585
|||||||||| ||| |||||||||||||
Sbjct: 351 ttccactgttataaatgtggatgttgcta 323
>gb|CX649335.1|CX649335 COLD1_34_C03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_34_C03_A029 5', mRNA sequence
Length = 699
Score = 42.1 bits (21), Expect = 0.026
Identities = 73/89 (82%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 498 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggagaattcc 557
|||||||| || ||||| ||||||||||||| || |||| || |||| || |||| |
Sbjct: 244 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 303
Query: 558 ttccactgtt-caaaagtggatgttgcta 585
|||||||||| ||| |||||||||||||
Sbjct: 304 ttccactgttataaatgtggatgttgcta 332
>gb|CX649763.1|CX649763 COLD1_41_H01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_H01_A029 3', mRNA sequence
Length = 753
Score = 42.1 bits (21), Expect = 0.026
Identities = 73/89 (82%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 498 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggagaattcc 557
|||||||| || ||||| ||||||||||||| || |||| || |||| || |||| |
Sbjct: 689 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 630
Query: 558 ttccactgtt-caaaagtggatgttgcta 585
|||||||||| ||| |||||||||||||
Sbjct: 629 ttccactgttataaatgtggatgttgcta 601
>gb|CX714248.1|CX714248 RTPQ1_19_F08.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_19_F08_A032 5', mRNA sequence
Length = 693
Score = 42.1 bits (21), Expect = 0.026
Identities = 118/149 (79%), Gaps = 1/149 (0%)
Strand = Plus / Plus
Query: 438 ggtgtttgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctct 497
|||||||| ||||| ||||||||||||| ||||| |||| || || || | |||
Sbjct: 332 ggtgtttgtatgggaaagtacttctgtgaaaaatgcaatttctttgatgacgaggactca 391
Query: 498 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggagaattcc 557
|||||||| || ||||| ||||||||||||| || |||| || |||| || |||| |
Sbjct: 392 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 451
Query: 558 ttccactgtt-caaaagtggatgttgcta 585
|||||||||| ||| |||||||||||||
Sbjct: 452 ttccactgttataaatgtggatgttgcta 480
>gb|DR024659.1|DR024659 STRS1_66_C04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_66_C04_A034 5', mRNA sequence
Length = 643
Score = 42.1 bits (21), Expect = 0.026
Identities = 73/89 (82%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 498 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggagaattcc 557
|||||||| || ||||| ||||||||||||| || |||| || |||| || |||| |
Sbjct: 78 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 137
Query: 558 ttccactgtt-caaaagtggatgttgcta 585
|||||||||| ||| |||||||||||||
Sbjct: 138 ttccactgttataaatgtggatgttgcta 166
>gb|DR089072.1|DR089072 RTAL1_6_H06.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_6_H06_A029 3', mRNA sequence
Length = 844
Score = 42.1 bits (21), Expect = 0.026
Identities = 73/89 (82%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 498 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggagaattcc 557
|||||||| || ||||| ||||||||||||| || |||| || |||| || |||| |
Sbjct: 31 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 90
Query: 558 ttccactgtt-caaaagtggatgttgcta 585
|||||||||| ||| |||||||||||||
Sbjct: 91 ttccactgttataaatgtggatgttgcta 119
>gb|DR089158.1|DR089158 RTAL1_6_H06.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_6_H06_A029 5', mRNA sequence
Length = 749
Score = 42.1 bits (21), Expect = 0.026
Identities = 73/89 (82%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 498 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggagaattcc 557
|||||||| || ||||| ||||||||||||| || |||| || |||| || |||| |
Sbjct: 200 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 259
Query: 558 ttccactgtt-caaaagtggatgttgcta 585
|||||||||| ||| |||||||||||||
Sbjct: 260 ttccactgttataaatgtggatgttgcta 288
>gb|DR691682.1|DR691682 EST1081769 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADB54 3' end, mRNA sequence
Length = 582
Score = 42.1 bits (21), Expect = 0.026
Identities = 118/149 (79%), Gaps = 1/149 (0%)
Strand = Plus / Plus
Query: 438 ggtgtttgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctct 497
|||||||| ||||| ||||||||||||| ||||| |||| || || || | |||
Sbjct: 244 ggtgtttgtatgggaaagtacttctgtgaaaaatgcaatttctttgatgacgaggactca 303
Query: 498 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggagaattcc 557
|||||||| || ||||| ||||||||||||| || |||| || |||| || |||| |
Sbjct: 304 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 363
Query: 558 ttccactgtt-caaaagtggatgttgcta 585
|||||||||| ||| |||||||||||||
Sbjct: 364 ttccactgttataaatgtggatgttgcta 392
>gb|DT636926.1|DT636926 EST1151857 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGX65 3' end, mRNA sequence
Length = 844
Score = 42.1 bits (21), Expect = 0.026
Identities = 118/149 (79%), Gaps = 1/149 (0%)
Strand = Plus / Plus
Query: 438 ggtgtttgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctct 497
|||||||| ||||| ||||||||||||| ||||| |||| || || || | |||
Sbjct: 207 ggtgtttgtatgggaaagtacttctgtgaaaaatgcaatttctttgatgacgaggactca 266
Query: 498 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggagaattcc 557
|||||||| || ||||| ||||||||||||| || |||| || |||| || |||| |
Sbjct: 267 aaacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttc 326
Query: 558 ttccactgtt-caaaagtggatgttgcta 585
|||||||||| ||| |||||||||||||
Sbjct: 327 ttccactgttataaatgtggatgttgcta 355
>gb|DR072816.1|DR072816 RTDK1_28_F08.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_28_F08_A029 5', mRNA sequence
Length = 527
Score = 40.1 bits (20), Expect = 0.10
Identities = 72/88 (81%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 499 aacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggagaattcct 558
||||||| || ||||| ||||||||||||| || |||| || |||| || |||| ||
Sbjct: 440 aacagcaataccactgtgacggatgtggaatttgcagaactggcggcaaagataatttct 499
Query: 559 tccactgtt-caaaagtggatgttgcta 585
||||||||| ||| |||||||||||||
Sbjct: 500 tccactgttataaatgtggatgttgcta 527
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 438 ggtgtttgcatggggaagtacttctgtg 465
|||||||| ||||| |||||||||||||
Sbjct: 379 ggtgtttgtatgggaaagtacttctgtg 406
>gb|DT631002.1|DT631002 EST1145933 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF376 3' end, mRNA sequence
Length = 775
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 438 ggtgtttgcatggggaagtacttctgtg 465
|||||||| ||||| |||||||||||||
Sbjct: 550 ggtgtttgtatgggaaagtacttctgtg 577
>gb|BE187458.1|BE187458 NXNV_98_E04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_98_E04 5', mRNA sequence
Length = 291
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 129 ttcaagagctctctgttgt 147
|||||||||||||||||||
Sbjct: 77 ttcaagagctctctgttgt 95
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 68,758
Number of Sequences: 355925
Number of extensions: 68758
Number of successful extensions: 18930
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 18880
Number of HSP's gapped (non-prelim): 43
length of query: 602
length of database: 217,277,237
effective HSP length: 19
effective length of query: 583
effective length of database: 210,514,662
effective search space: 122730047946
effective search space used: 122730047946
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)