BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3147935.2.1
(711 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO166264.1|CO166264 FLD1_60_D08.g1_A029 Root flooded Pin... 40 0.12
gb|CO196729.1|CO196729 GEO1_1_D11.b1_A029 Root gravitropism... 40 0.12
gb|DN611103.1|DN611103 EST964153 Subtracted pine embryo lib... 40 0.12
gb|DN612131.1|DN612131 EST965181 Subtracted pine embryo lib... 40 0.12
gb|DR048053.1|DR048053 RTBOR1_6_G03.b2_A029 Roots plus adde... 40 0.12
gb|DR048135.1|DR048135 RTBOR1_6_G03.g2_A029 Roots plus adde... 40 0.12
gb|DR098115.1|DR098115 STRR1_39_E05.b1_A033 Stem Response R... 40 0.12
gb|DR167028.1|DR167028 RTPHOS1_16_D07.b1_A029 Roots minus p... 40 0.12
gb|DR167094.1|DR167094 RTPHOS1_16_D07.g1_A029 Roots minus p... 40 0.12
gb|DR386577.1|DR386577 RTHG1_16_D04.b1_A029 Roots plus adde... 40 0.12
gb|DT628119.1|DT628119 EST1156868 Subtracted pine embryo li... 40 0.12
gb|DT629143.1|DT629143 EST1155713 Subtracted pine embryo li... 40 0.12
>gb|CO166264.1|CO166264 FLD1_60_D08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_60_D08_A029 5', mRNA sequence
Length = 919
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 321 taagttactacagcgaagtt 340
||||||||||||||||||||
Sbjct: 767 taagttactacagcgaagtt 748
>gb|CO196729.1|CO196729 GEO1_1_D11.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_1_D11_A029 3', mRNA sequence
Length = 550
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 321 taagttactacagcgaagtt 340
||||||||||||||||||||
Sbjct: 404 taagttactacagcgaagtt 385
>gb|DN611103.1|DN611103 EST964153 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAX81, mRNA sequence
Length = 750
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 gtggcttgacttttgtcaaa 165
||||||||||||||||||||
Sbjct: 176 gtggcttgacttttgtcaaa 195
>gb|DN612131.1|DN612131 EST965181 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABB34, mRNA sequence
Length = 372
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 gtggcttgacttttgtcaaa 165
||||||||||||||||||||
Sbjct: 159 gtggcttgacttttgtcaaa 178
>gb|DR048053.1|DR048053 RTBOR1_6_G03.b2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_6_G03_A029 3', mRNA sequence
Length = 680
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 321 taagttactacagcgaagtt 340
||||||||||||||||||||
Sbjct: 547 taagttactacagcgaagtt 528
>gb|DR048135.1|DR048135 RTBOR1_6_G03.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_6_G03_A029 5', mRNA sequence
Length = 838
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 321 taagttactacagcgaagtt 340
||||||||||||||||||||
Sbjct: 782 taagttactacagcgaagtt 763
>gb|DR098115.1|DR098115 STRR1_39_E05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_39_E05_A033 3', mRNA sequence
Length = 795
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 321 taagttactacagcgaagtt 340
||||||||||||||||||||
Sbjct: 662 taagttactacagcgaagtt 643
>gb|DR167028.1|DR167028 RTPHOS1_16_D07.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_16_D07_A029 3', mRNA sequence
Length = 539
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 321 taagttactacagcgaagtt 340
||||||||||||||||||||
Sbjct: 404 taagttactacagcgaagtt 385
>gb|DR167094.1|DR167094 RTPHOS1_16_D07.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_16_D07_A029 5', mRNA sequence
Length = 539
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 321 taagttactacagcgaagtt 340
||||||||||||||||||||
Sbjct: 387 taagttactacagcgaagtt 368
>gb|DR386577.1|DR386577 RTHG1_16_D04.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_16_D04_A029 3', mRNA sequence
Length = 824
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 321 taagttactacagcgaagtt 340
||||||||||||||||||||
Sbjct: 683 taagttactacagcgaagtt 664
>gb|DT628119.1|DT628119 EST1156868 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCU45 5' end, mRNA sequence
Length = 909
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 146 gtggcttgacttttgtcaaa 165
||||||||||||||||||||
Sbjct: 846 gtggcttgacttttgtcaaa 827
>gb|DT629143.1|DT629143 EST1155713 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD610 5' end, mRNA sequence
Length = 656
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 gtggcttgacttttgtcaaa 165
||||||||||||||||||||
Sbjct: 159 gtggcttgacttttgtcaaa 178
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 61,996
Number of Sequences: 355925
Number of extensions: 61996
Number of successful extensions: 16296
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16284
Number of HSP's gapped (non-prelim): 12
length of query: 711
length of database: 217,277,237
effective HSP length: 19
effective length of query: 692
effective length of database: 210,514,662
effective search space: 145676146104
effective search space used: 145676146104
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)