BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115147.2.2
(1310 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV035567.1|CV035567 RTNACL1_41_A02.b1_A029 Roots plus ad... 42 0.057
gb|CV035637.1|CV035637 RTNACL1_41_A02.g1_A029 Roots plus ad... 42 0.057
gb|CF394121.1|CF394121 RTDS2_3_E05.g1_A021 Drought-stressed... 40 0.22
gb|CF396130.1|CF396130 RTDS2_13_C11.g1_A021 Drought-stresse... 40 0.22
gb|CF477100.1|CF477100 RTWW3_5_F01.g1_A022 Well-watered lob... 40 0.22
gb|CF477774.1|CF477774 RTWW3_9_E09.g1_A022 Well-watered lob... 40 0.22
gb|CF479703.1|CF479703 RTWW3_11_H12.g1_A022 Well-watered lo... 40 0.22
gb|CF670651.1|CF670651 RTCNT1_51_D09.g1_A029 Root control P... 40 0.22
gb|CO165626.1|CO165626 FLD1_55_H02.g1_A029 Root flooded Pin... 40 0.22
gb|CO166068.1|CO166068 FLD1_59_C07.b1_A029 Root flooded Pin... 40 0.22
gb|CO168780.1|CO168780 NDL1_2_B04.g1_A029 Needles control P... 40 0.22
gb|CO169715.1|CO169715 NDL1_9_C08.b1_A029 Needles control P... 40 0.22
gb|CO169780.1|CO169780 NDL1_9_C08.g1_A029 Needles control P... 40 0.22
gb|CO363981.1|CO363981 RTK1_13_A05.b1_A029 Roots minus pota... 40 0.22
gb|CO364057.1|CO364057 RTK1_13_A05.g1_A029 Roots minus pota... 40 0.22
gb|CX646563.1|CX646563 COLD1_10_D03.b1_A029 Root cold Pinus... 40 0.22
gb|CX646646.1|CX646646 COLD1_10_D03.g1_A029 Root cold Pinus... 40 0.22
gb|DR018328.1|DR018328 STRS1_22_D09.b1_A034 Shoot tip pitch... 40 0.22
gb|DR018392.1|DR018392 STRS1_22_D09.g1_A034 Shoot tip pitch... 40 0.22
gb|DR048227.1|DR048227 RTBOR1_7_H11.b2_A029 Roots plus adde... 40 0.22
gb|DR048312.1|DR048312 RTBOR1_7_H11.g2_A029 Roots plus adde... 40 0.22
gb|DR048488.1|DR048488 RTBOR1_9_F03.b1_A029 Roots plus adde... 40 0.22
gb|DR048565.1|DR048565 RTBOR1_9_F03.g1_A029 Roots plus adde... 40 0.22
gb|DR089975.1|DR089975 RTAL1_12_A11.b1_A029 Roots plus adde... 40 0.22
gb|DR090059.1|DR090059 RTAL1_12_A11.g1_A029 Roots plus adde... 40 0.22
gb|DR120675.1|DR120675 RTMG1_31_F01.b1_A029 Roots minus mag... 40 0.22
gb|DR166076.1|DR166076 RTPHOS1_9_F02.b2_A029 Roots minus ph... 40 0.22
gb|DR687763.1|DR687763 EST1077845 Normalized pine embryo li... 40 0.22
gb|DR689232.1|DR689232 EST1079318 Normalized pine embryo li... 40 0.22
gb|DR691555.1|DR691555 EST1081642 Normalized pine embryo li... 40 0.22
gb|DR691575.1|DR691575 EST1081662 Normalized pine embryo li... 40 0.22
>gb|CV035567.1|CV035567 RTNACL1_41_A02.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_41_A02_A029 3', mRNA sequence
Length = 837
Score = 42.1 bits (21), Expect = 0.057
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 658 caggacacgctgtacgaccacaagggcctgcactacttcaagggctgcctcat 710
||||| || ||||| || ||||||||||| ||||| |||||| ||||| ||||
Sbjct: 455 caggatactctgtatgatcacaagggccttcactatttcaagagctgcttcat 507
>gb|CV035637.1|CV035637 RTNACL1_41_A02.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_41_A02_A029 5', mRNA sequence
Length = 770
Score = 42.1 bits (21), Expect = 0.057
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 658 caggacacgctgtacgaccacaagggcctgcactacttcaagggctgcctcat 710
||||| || ||||| || ||||||||||| ||||| |||||| ||||| ||||
Sbjct: 163 caggatactctgtatgatcacaagggccttcactatttcaagagctgcttcat 215
Score = 40.1 bits (20), Expect = 0.22
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 667 ctgtacgaccacaagggcctgcactacttcaagggctgcctcat 710
||||| || ||||||||||| ||||| |||||| ||||| ||||
Sbjct: 667 ctgtatgatcacaagggccttcactatttcaagagctgcttcat 710
>gb|CF394121.1|CF394121 RTDS2_3_E05.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_3_E05_A021 5', mRNA sequence
Length = 761
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 516 ggcagcgtcgacttcatctt 535
>gb|CF396130.1|CF396130 RTDS2_13_C11.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_13_C11_A021 5', mRNA sequence
Length = 767
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 529 ggcagcgtcgacttcatctt 548
>gb|CF477100.1|CF477100 RTWW3_5_F01.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_5_F01_A022 5', mRNA sequence
Length = 689
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 493 ggcagcgtcgacttcatctt 512
>gb|CF477774.1|CF477774 RTWW3_9_E09.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_9_E09_A022 5', mRNA sequence
Length = 707
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 464 ggcagcgtcgacttcatctt 483
>gb|CF479703.1|CF479703 RTWW3_11_H12.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_11_H12_A022 5', mRNA sequence
Length = 696
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 453 ggcagcgtcgacttcatctt 472
>gb|CF670651.1|CF670651 RTCNT1_51_D09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_51_D09_A029 5', mRNA sequence
Length = 746
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 507 ggcagcgtcgacttcatctt 526
>gb|CO165626.1|CO165626 FLD1_55_H02.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_55_H02_A029 5', mRNA sequence
Length = 709
Score = 40.1 bits (20), Expect = 0.22
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 658 caggacacgctgtacgaccacaagggcctgcactacttcaagggctgc 705
||||| || ||||| || ||||||||||| ||||| |||||| |||||
Sbjct: 661 caggatactctgtatgatcacaagggccttcactatttcaagagctgc 708
Score = 40.1 bits (20), Expect = 0.22
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 667 ctgtacgaccacaagggcctgcactacttcaagggctgcctcat 710
||||| || ||||||||||| ||||| |||||| ||||| ||||
Sbjct: 192 ctgtatgatcacaagggccttcactatttcaagagctgcttcat 235
>gb|CO166068.1|CO166068 FLD1_59_C07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_C07_A029 3', mRNA sequence
Length = 858
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 198 ggcagcgtcgacttcatctt 217
>gb|CO168780.1|CO168780 NDL1_2_B04.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_2_B04_A029 5', mRNA sequence
Length = 723
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 231 ggcagcgtcgacttcatctt 250
>gb|CO169715.1|CO169715 NDL1_9_C08.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_9_C08_A029 3', mRNA sequence
Length = 792
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 130 ggcagcgtcgacttcatctt 149
>gb|CO169780.1|CO169780 NDL1_9_C08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_9_C08_A029 5', mRNA sequence
Length = 656
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 384 ggcagcgtcgacttcatctt 403
>gb|CO363981.1|CO363981 RTK1_13_A05.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_A05_A029 3', mRNA sequence
Length = 903
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 244 ggcagcgtcgacttcatctt 263
>gb|CO364057.1|CO364057 RTK1_13_A05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_A05_A029 5', mRNA sequence
Length = 879
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 497 ggcagcgtcgacttcatctt 516
>gb|CX646563.1|CX646563 COLD1_10_D03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_10_D03_A029 3', mRNA sequence
Length = 888
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 363 ggcagcgtcgacttcatctt 344
>gb|CX646646.1|CX646646 COLD1_10_D03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_10_D03_A029 5', mRNA sequence
Length = 695
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 573 ggcagcgtcgacttcatctt 554
>gb|DR018328.1|DR018328 STRS1_22_D09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_22_D09_A034 3', mRNA sequence
Length = 756
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 422 ggcagcgtcgacttcatctt 403
>gb|DR018392.1|DR018392 STRS1_22_D09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_22_D09_A034 5', mRNA sequence
Length = 595
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 593 ggcagcgtcgacttcatctt 574
>gb|DR048227.1|DR048227 RTBOR1_7_H11.b2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_7_H11_A029 3', mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 39 ggcagcgtcgacttcatctt 58
>gb|DR048312.1|DR048312 RTBOR1_7_H11.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_7_H11_A029 5', mRNA sequence
Length = 813
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 225 ggcagcgtcgacttcatctt 244
>gb|DR048488.1|DR048488 RTBOR1_9_F03.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_9_F03_A029 3', mRNA sequence
Length = 843
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 175 ggcagcgtcgacttcatctt 156
>gb|DR048565.1|DR048565 RTBOR1_9_F03.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_9_F03_A029 5', mRNA sequence
Length = 697
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 659 ggcagcgtcgacttcatctt 640
>gb|DR089975.1|DR089975 RTAL1_12_A11.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_12_A11_A029 3', mRNA sequence
Length = 800
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 195 ggcagcgtcgacttcatctt 214
>gb|DR090059.1|DR090059 RTAL1_12_A11.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_12_A11_A029 5', mRNA sequence
Length = 769
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 500 ggcagcgtcgacttcatctt 519
>gb|DR120675.1|DR120675 RTMG1_31_F01.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_31_F01_A029 3', mRNA sequence
Length = 789
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 244 ggcagcgtcgacttcatctt 225
>gb|DR166076.1|DR166076 RTPHOS1_9_F02.b2_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_9_F02_A029 3', mRNA sequence
Length = 789
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 191 ggcagcgtcgacttcatctt 172
>gb|DR687763.1|DR687763 EST1077845 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABW30 3' end, mRNA sequence
Length = 826
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 545 ggcagcgtcgacttcatctt 564
>gb|DR689232.1|DR689232 EST1079318 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACF78 3' end, mRNA sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 544 ggcagcgtcgacttcatctt 563
>gb|DR691555.1|DR691555 EST1081642 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD991 3' end, mRNA sequence
Length = 757
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 489 ggcagcgtcgacttcatctt 508
>gb|DR691575.1|DR691575 EST1081662 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADA18 3' end, mRNA sequence
Length = 847
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 715 ggcagcgtcgacttcatctt 734
||||||||||||||||||||
Sbjct: 585 ggcagcgtcgacttcatctt 604
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 167,897
Number of Sequences: 355925
Number of extensions: 167897
Number of successful extensions: 53143
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53110
Number of HSP's gapped (non-prelim): 33
length of query: 1310
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1291
effective length of database: 210,514,662
effective search space: 271774428642
effective search space used: 271774428642
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)