BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3106160.2.1
         (788 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BX252725.1|BX252725  BX252725 Pinus pinaster differenciat...    50   1e-004
gb|CF394813.1|CF394813  RTDS2_7_D09.g1_A021 Drought-stressed...    50   1e-004
gb|BX682384.2|BX682384  BX682384 Pinus pinaster differenciat...    50   1e-004
>gb|BX252725.1|BX252725 BX252725 Pinus pinaster differenciating xylem adult Pinus pinaster
           cDNA clone PP069G07, mRNA sequence
          Length = 681

 Score = 50.1 bits (25), Expect = 1e-004
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 63  tgtggatgcaagcctacaaaagaagatgttaagagatgtttcatg 107
           ||||| |||||||||||||| || ||||| |||||||| ||||||
Sbjct: 453 tgtggttgcaagcctacaaaggaggatgtcaagagatgcttcatg 497
>gb|CF394813.1|CF394813 RTDS2_7_D09.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
           taeda cDNA clone RTDS2_7_D09_A021 5', mRNA sequence
          Length = 767

 Score = 50.1 bits (25), Expect = 1e-004
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 63  tgtggatgcaagcctacaaaagaagatgttaagagatgtttcatg 107
           ||||| |||||||||||||| || ||||| |||||||| ||||||
Sbjct: 3   tgtggttgcaagcctacaaaggaggatgtcaagagatgcttcatg 47
>gb|BX682384.2|BX682384 BX682384 Pinus pinaster differenciating xylem adult Pinus pinaster
           cDNA clone 115H04 similar to seedling lethal mutation,
           mRNA sequence
          Length = 677

 Score = 50.1 bits (25), Expect = 1e-004
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 63  tgtggatgcaagcctacaaaagaagatgttaagagatgtttcatg 107
           ||||| |||||||||||||| || ||||| |||||||| ||||||
Sbjct: 91  tgtggttgcaagcctacaaaggaggatgtcaagagatgcttcatg 135
  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 106,870
Number of Sequences: 355925
Number of extensions: 106870
Number of successful extensions: 26347
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26344
Number of HSP's gapped (non-prelim): 3
length of query: 788
length of database: 217,277,237
effective HSP length: 19
effective length of query: 769
effective length of database: 210,514,662
effective search space: 161885775078
effective search space used: 161885775078
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)