BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106160.2.1
(788 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX252725.1|BX252725 BX252725 Pinus pinaster differenciat... 50 1e-004
gb|CF394813.1|CF394813 RTDS2_7_D09.g1_A021 Drought-stressed... 50 1e-004
gb|BX682384.2|BX682384 BX682384 Pinus pinaster differenciat... 50 1e-004
>gb|BX252725.1|BX252725 BX252725 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP069G07, mRNA sequence
Length = 681
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 63 tgtggatgcaagcctacaaaagaagatgttaagagatgtttcatg 107
||||| |||||||||||||| || ||||| |||||||| ||||||
Sbjct: 453 tgtggttgcaagcctacaaaggaggatgtcaagagatgcttcatg 497
>gb|CF394813.1|CF394813 RTDS2_7_D09.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_7_D09_A021 5', mRNA sequence
Length = 767
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 63 tgtggatgcaagcctacaaaagaagatgttaagagatgtttcatg 107
||||| |||||||||||||| || ||||| |||||||| ||||||
Sbjct: 3 tgtggttgcaagcctacaaaggaggatgtcaagagatgcttcatg 47
>gb|BX682384.2|BX682384 BX682384 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 115H04 similar to seedling lethal mutation,
mRNA sequence
Length = 677
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 63 tgtggatgcaagcctacaaaagaagatgttaagagatgtttcatg 107
||||| |||||||||||||| || ||||| |||||||| ||||||
Sbjct: 91 tgtggttgcaagcctacaaaggaggatgtcaagagatgcttcatg 135
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 106,870
Number of Sequences: 355925
Number of extensions: 106870
Number of successful extensions: 26347
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26344
Number of HSP's gapped (non-prelim): 3
length of query: 788
length of database: 217,277,237
effective HSP length: 19
effective length of query: 769
effective length of database: 210,514,662
effective search space: 161885775078
effective search space used: 161885775078
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)