BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3089980.2.1
(540 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR053137.1|DR053137 RTCA1_9_E11.b1_A029 Roots minus calc... 38 0.36
gb|DR053218.1|DR053218 RTCA1_9_E11.g1_A029 Roots minus calc... 38 0.36
>gb|DR053137.1|DR053137 RTCA1_9_E11.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_9_E11_A029 3', mRNA sequence
Length = 646
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 237 gcagacgccggcgacgacg 255
|||||||||||||||||||
Sbjct: 122 gcagacgccggcgacgacg 104
>gb|DR053218.1|DR053218 RTCA1_9_E11.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_9_E11_A029 5', mRNA sequence
Length = 684
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 237 gcagacgccggcgacgacg 255
|||||||||||||||||||
Sbjct: 450 gcagacgccggcgacgacg 432
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,867
Number of Sequences: 355925
Number of extensions: 38867
Number of successful extensions: 10509
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10507
Number of HSP's gapped (non-prelim): 2
length of query: 540
length of database: 217,277,237
effective HSP length: 19
effective length of query: 521
effective length of database: 210,514,662
effective search space: 109678138902
effective search space used: 109678138902
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)