BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071743.2.1
(586 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO167423.1|CO167423 FLD1_68_H01.g1_A029 Root flooded Pin... 64 7e-009
gb|BE662431.1|BE662431 ST85/ST85B08 Pine TriplEx shoot tip ... 46 0.002
gb|CX715022.1|CX715022 RTPQ1_30_A01.b1_A032 Roots treated w... 42 0.025
>gb|CO167423.1|CO167423 FLD1_68_H01.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_68_H01_A029 5', mRNA sequence
Length = 857
Score = 63.9 bits (32), Expect = 7e-009
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 485 ctgaaaaagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaattt 544
|||| ||||||||||| |||||||| |||| || ||||| || ||||| | ||||| |
Sbjct: 285 ctgagaaagcaactccgaaaggtgttttgaagctcatgaatgttgaaggcttgacaatat 344
Query: 545 atcatgtgaagagccatctgcagaagtatcgg 576
|||||||||| ||||| |||||||| ||||||
Sbjct: 345 atcatgtgaaaagccacctgcagaaatatcgg 376
>gb|BE662431.1|BE662431 ST85/ST85B08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST85/ST85B08, mRNA sequence
Length = 380
Score = 46.1 bits (23), Expect = 0.002
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 538 acaatttatcatgtgaagagccatctgcagaagtatcgg 576
||||| ||||||||||| ||||| |||||||| ||||||
Sbjct: 6 acaatatatcatgtgaaaagccacctgcagaaatatcgg 44
>gb|CX715022.1|CX715022 RTPQ1_30_A01.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_30_A01_A032 3', mRNA sequence
Length = 408
Score = 42.1 bits (21), Expect = 0.025
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 438 tgagcttcatgagcgttttgt 458
|||||||||||||||||||||
Sbjct: 112 tgagcttcatgagcgttttgt 92
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72,766
Number of Sequences: 355925
Number of extensions: 72766
Number of successful extensions: 19901
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19898
Number of HSP's gapped (non-prelim): 3
length of query: 586
length of database: 217,277,237
effective HSP length: 19
effective length of query: 567
effective length of database: 210,514,662
effective search space: 119361813354
effective search space used: 119361813354
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)