BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3071483.2.1
         (531 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BX678353.1|BX678353  BX678353 RS Pinus pinaster cDNA clon...    42   0.023
gb|CR393139.1|CR393139  CR393139 RN Pinus pinaster cDNA clon...    42   0.023
gb|CR393611.1|CR393611  CR393611 RN Pinus pinaster cDNA clon...    42   0.023
gb|CX648438.1|CX648438  COLD1_28_D12.g1_A029 Root cold Pinus...    42   0.023

>gb|BX678353.1|BX678353 BX678353 RS Pinus pinaster cDNA clone RS08A05, mRNA sequence
          Length = 577

 Score = 42.1 bits (21), Expect = 0.023
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 263 cggggcggtcggccatgttgcagcgcttggggatggtaatggcga 307
           ||||||| | ||| |||||||||||||| || ||||| |||||||
Sbjct: 368 cggggcgattggcaatgttgcagcgcttaggaatggtgatggcga 324



>gb|CR393139.1|CR393139 CR393139 RN Pinus pinaster cDNA clone RN53B02, mRNA sequence
          Length = 507

 Score = 42.1 bits (21), Expect = 0.023
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 263 cggggcggtcggccatgttgcagcgcttggggatggtaatggcga 307
           ||||||| | ||| |||||||||||||| || ||||| |||||||
Sbjct: 367 cggggcgattggcaatgttgcagcgcttaggaatggtgatggcga 323



>gb|CR393611.1|CR393611 CR393611 RN Pinus pinaster cDNA clone RN62E03, mRNA sequence
          Length = 590

 Score = 42.1 bits (21), Expect = 0.023
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 263 cggggcggtcggccatgttgcagcgcttggggatggtaatggcga 307
           ||||||| | ||| |||||||||||||| || ||||| |||||||
Sbjct: 387 cggggcgattggcaatgttgcagcgcttaggaatggtgatggcga 343



>gb|CX648438.1|CX648438 COLD1_28_D12.g1_A029 Root cold Pinus taeda cDNA clone
           COLD1_28_D12_A029 5', mRNA sequence
          Length = 840

 Score = 42.1 bits (21), Expect = 0.023
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 263 cggggcggtcggccatgttgcagcgcttggggatggtaatggcga 307
           ||||||| | ||| |||||||||||||| || ||||| |||||||
Sbjct: 413 cggggcgattggcaatgttgcagcgcttaggaatggtgatggcga 457



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 42,773
Number of Sequences: 355925
Number of extensions: 42773
Number of successful extensions: 13172
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13168
Number of HSP's gapped (non-prelim): 4
length of query: 531
length of database: 217,277,237
effective HSP length: 19
effective length of query: 512
effective length of database: 210,514,662
effective search space: 107783506944
effective search space used: 107783506944
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)