BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071418.2.1
(1432 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO370451.1|CO370451 RTK1_68_A10.b1_A029 Roots minus pota... 46 0.004
gb|CO197585.1|CO197585 GEO1_7_B10.g1_A029 Root gravitropism... 44 0.016
gb|DR059786.1|DR059786 RTNIT1_19_F07.g1_A029 Roots minus ni... 44 0.016
gb|CF476462.1|CF476462 RTWW3_1_B08.g1_A022 Well-watered lob... 40 0.25
gb|BX678762.1|BX678762 BX678762 RS Pinus pinaster cDNA clon... 40 0.25
gb|BX678852.1|BX678852 BX678852 RS Pinus pinaster cDNA clon... 40 0.25
>gb|CO370451.1|CO370451 RTK1_68_A10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_68_A10_A029 3', mRNA sequence
Length = 824
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 467 cttcaatatcttgacacactcatcgtcaccccagtcatg 505
||||| |||||||| ||| || |||||||||||||||||
Sbjct: 197 cttcagtatcttgatacagtcctcgtcaccccagtcatg 159
>gb|CO197585.1|CO197585 GEO1_7_B10.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_7_B10_A029 5', mRNA sequence
Length = 777
Score = 44.1 bits (22), Expect = 0.016
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 460 tgcaattcttcaatatcttgacacactcatcgtcaccccagtcatg 505
|||||||||||| |||||||| ||| || ||||| ||||||||||
Sbjct: 420 tgcaattcttcagtatcttgatacagtcctcgtcgtcccagtcatg 465
>gb|DR059786.1|DR059786 RTNIT1_19_F07.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_19_F07_A029 5', mRNA sequence
Length = 783
Score = 44.1 bits (22), Expect = 0.016
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 459 ttgcaattcttcaatatcttga 480
||||||||||||||||||||||
Sbjct: 612 ttgcaattcttcaatatcttga 591
>gb|CF476462.1|CF476462 RTWW3_1_B08.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_1_B08_A022 5', mRNA sequence
Length = 616
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 642 gggaaggcggcggcgatggt 661
||||||||||||||||||||
Sbjct: 554 gggaaggcggcggcgatggt 573
>gb|BX678762.1|BX678762 BX678762 RS Pinus pinaster cDNA clone RS14G09, mRNA sequence
Length = 549
Score = 40.1 bits (20), Expect = 0.25
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 466 tcttcaatatcttgacacactcatcgtcaccccagtcatg 505
|||||| |||||||| ||| || ||||| |||||||||||
Sbjct: 285 tcttcagtatcttgatacagtcctcgtcgccccagtcatg 246
>gb|BX678852.1|BX678852 BX678852 RS Pinus pinaster cDNA clone RS16A04, mRNA sequence
Length = 591
Score = 40.1 bits (20), Expect = 0.25
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 466 tcttcaatatcttgacacactcatcgtcaccccagtcatg 505
|||||| |||||||| ||| || ||||| |||||||||||
Sbjct: 285 tcttcagtatcttgatacagtcctcgtcgccccagtcatg 246
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 153,640
Number of Sequences: 355925
Number of extensions: 153640
Number of successful extensions: 42579
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42570
Number of HSP's gapped (non-prelim): 9
length of query: 1432
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1413
effective length of database: 210,514,662
effective search space: 297457217406
effective search space used: 297457217406
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)