BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3070863.2.1
(992 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE810234.1|BE810234 NXCI_061_H01_F NXCI (Nsf Xylem Compr... 50 2e-004
gb|BX680985.1|BX680985 BX680985 RS Pinus pinaster cDNA clon... 50 2e-004
gb|CO163657.1|CO163657 FLD1_43_A09.b1_A029 Root flooded Pin... 50 2e-004
gb|CO163734.1|CO163734 FLD1_43_A09.g1_A029 Root flooded Pin... 50 2e-004
gb|CO165478.1|CO165478 FLD1_54_F12.g1_A029 Root flooded Pin... 50 2e-004
gb|CV032648.1|CV032648 RTNACL1_17_B07.g1_A029 Roots plus ad... 50 2e-004
gb|CX648043.1|CX648043 COLD1_26_E02.b1_A029 Root cold Pinus... 50 2e-004
gb|CX648124.1|CX648124 COLD1_26_E02.g1_A029 Root cold Pinus... 50 2e-004
gb|DN462146.1|DN462146 EST957945 Sequencing ESTs from loblo... 50 2e-004
gb|DN465658.1|DN465658 EST961457 Sequencing ESTs from loblo... 50 2e-004
gb|DR013096.1|DR013096 HEAT1_17_A09.b1_A029 Root at 37 C fo... 50 2e-004
gb|DR022767.1|DR022767 STRS1_53_G12.b1_A034 Shoot tip pitch... 50 2e-004
gb|DR051934.1|DR051934 RTCA1_1_H06.b1_A029 Roots minus calc... 50 2e-004
gb|DR052017.1|DR052017 RTCA1_1_H06.g1_A029 Roots minus calc... 50 2e-004
gb|DR060310.1|DR060310 RTNIT1_27_C03.b1_A029 Roots minus ni... 50 2e-004
gb|DR060394.1|DR060394 RTNIT1_27_C03.g1_A029 Roots minus ni... 50 2e-004
gb|DR094390.1|DR094390 STRR1_14_F10.b1_A033 Stem Response R... 50 2e-004
gb|DR094471.1|DR094471 STRR1_14_F10.g1_A033 Stem Response R... 50 2e-004
gb|DR744848.1|DR744848 RTCU1_25_G07.b1_A029 Roots plus adde... 50 2e-004
gb|DR744925.1|DR744925 RTCU1_25_G07.g1_A029 Roots plus adde... 50 2e-004
gb|DT627059.1|DT627059 EST1160135 Sequencing ESTs from lobl... 50 2e-004
gb|DT627318.1|DT627318 EST1160394 Sequencing ESTs from lobl... 50 2e-004
gb|BX248871.1|BX248871 BX248871 Pinus pinaster differenciat... 48 7e-004
gb|BX252904.1|BX252904 BX252904 Pinus pinaster differenciat... 48 7e-004
gb|BF221218.1|BF221218 NXCI_156_B05_F NXCI (Nsf Xylem Compr... 48 7e-004
gb|BX681596.1|BX681596 BX681596 RS Pinus pinaster cDNA clon... 48 7e-004
gb|CV144691.1|CV144691 EST855900 Sequencing ESTs from loblo... 48 7e-004
gb|DR013166.1|DR013166 HEAT1_17_A09.g1_A029 Root at 37 C fo... 46 0.003
gb|DR097420.1|DR097420 STRR1_34_C04.g3_A033 Stem Response R... 46 0.003
gb|CO172567.1|CO172567 NDL1_30_B07.g1_A029 Needles control ... 44 0.011
gb|CO363997.1|CO363997 RTK1_13_C03.b1_A029 Roots minus pota... 44 0.011
gb|CO364078.1|CO364078 RTK1_13_C03.g1_A029 Roots minus pota... 44 0.011
gb|CX650832.1|CX650832 COLD1_48_H10.b1_A029 Root cold Pinus... 44 0.011
gb|DR011905.1|DR011905 HEAT1_8_E01.g1_A029 Root at 37 C for... 44 0.011
gb|DR013810.1|DR013810 HEAT1_21_E01.g1_A029 Root at 37 C fo... 44 0.011
gb|DR071340.1|DR071340 RTDK1_19_E11.b1_A029 Roots, dark Pin... 44 0.011
gb|DR071417.1|DR071417 RTDK1_19_E11.g1_A029 Roots, dark Pin... 44 0.011
gb|DR102633.1|DR102633 STRR1_82_D05.g1_A033 Stem Response R... 44 0.011
gb|DR689840.1|DR689840 EST1079926 Normalized pine embryo li... 44 0.011
gb|DR691509.1|DR691509 EST1081596 Normalized pine embryo li... 44 0.011
gb|DR692028.1|DR692028 EST1082115 Normalized pine embryo li... 44 0.011
gb|DT635813.1|DT635813 EST1150744 Normalized pine embryo li... 44 0.011
gb|BG317773.1|BG317773 NXPV_005_E08_F NXPV (Nsf Xylem Plani... 42 0.043
>gb|BE810234.1|BE810234 NXCI_061_H01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_061_H01 5' similar to Arabidopsis
thaliana sequence At4g05530 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 376
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 315 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 374
Query: 583 g 583
|
Sbjct: 375 g 375
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||||| |||| |||||| | ||
Sbjct: 170 agagcctgtacttgataaactttgggagattaacgtcaaggccactattcttcttgtcca 229
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 230 ggatgcttctgctcac 245
>gb|BX680985.1|BX680985 BX680985 RS Pinus pinaster cDNA clone RS51F09, mRNA sequence
Length = 561
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 78 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 137
Query: 583 g 583
|
Sbjct: 138 g 138
>gb|CO163657.1|CO163657 FLD1_43_A09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_43_A09_A029 3', mRNA sequence
Length = 828
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 237 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 296
Query: 583 g 583
|
Sbjct: 297 g 297
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||||| |||| |||||| | ||
Sbjct: 92 agagcctgtacttgataaactttgggagattaacgtcaaggccactattcttcttgtcca 151
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 152 ggatgcttctgctcac 167
>gb|CO163734.1|CO163734 FLD1_43_A09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_43_A09_A029 5', mRNA sequence
Length = 818
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 465 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 524
Query: 583 g 583
|
Sbjct: 525 g 525
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||||| |||| |||||| | ||
Sbjct: 320 agagcctgtacttgataaactttgggagattaacgtcaaggccactattcttcttgtcca 379
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 380 ggatgcttctgctcac 395
>gb|CO165478.1|CO165478 FLD1_54_F12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_54_F12_A029 5', mRNA sequence
Length = 809
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 452 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 511
Query: 583 g 583
|
Sbjct: 512 g 512
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||||| |||| |||||| | ||
Sbjct: 307 agagcctgtacttgataaactttgggagattaacgtcaaggccactattcttcttgtcca 366
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 367 ggatgcttctgctcac 382
>gb|CV032648.1|CV032648 RTNACL1_17_B07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_17_B07_A029 5', mRNA sequence
Length = 752
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 414 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 473
Query: 583 g 583
|
Sbjct: 474 g 474
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||||| |||| |||||| | ||
Sbjct: 269 agagcctgtacttgataaactttgggagattaacgtcaaggccactattcttcttgtcca 328
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 329 ggatgcttctgctcac 344
>gb|CX648043.1|CX648043 COLD1_26_E02.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_26_E02_A029 3', mRNA sequence
Length = 853
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 87 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 146
Query: 583 g 583
|
Sbjct: 147 g 147
>gb|CX648124.1|CX648124 COLD1_26_E02.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_26_E02_A029 5', mRNA sequence
Length = 903
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 556 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 615
Query: 583 g 583
|
Sbjct: 616 g 616
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||||| |||| |||||| | ||
Sbjct: 411 agagcctgtacttgataaactttgggagattaacgtcaaggccactattcttcttgtcca 470
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 471 ggatgcttctgctcac 486
>gb|DN462146.1|DN462146 EST957945 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIII87 5' end, mRNA sequence
Length = 749
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 484 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 543
Query: 583 g 583
|
Sbjct: 544 g 544
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||||| |||| |||||| | ||
Sbjct: 339 agagcctgtacttgataaactttgggagattaacgtcaaggccactattcttcttgtcca 398
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 399 ggatgcttctgctcac 414
>gb|DN465658.1|DN465658 EST961457 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIJT04 5' end, mRNA sequence
Length = 727
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 414 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 473
Query: 583 g 583
|
Sbjct: 474 g 474
>gb|DR013096.1|DR013096 HEAT1_17_A09.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_17_A09_A029 3', mRNA sequence
Length = 897
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 333 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 392
Query: 583 g 583
|
Sbjct: 393 g 393
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||||| |||| |||||| | ||
Sbjct: 188 agagcctgtacttgataaactttgggagattaacgtcaaggccactattcttcttgtcca 247
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 248 ggatgcttctgctcac 263
>gb|DR022767.1|DR022767 STRS1_53_G12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_53_G12_A034 3', mRNA sequence
Length = 791
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 237 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 296
Query: 583 g 583
|
Sbjct: 297 g 297
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||||| |||| |||||| | ||
Sbjct: 92 agagcctgtacttgataaactttgggagattaacgtcaaggccactattcttcttgtcca 151
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 152 ggatgcttctgctcac 167
>gb|DR051934.1|DR051934 RTCA1_1_H06.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_1_H06_A029 3', mRNA sequence
Length = 889
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 378 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 319
Query: 583 g 583
|
Sbjct: 318 g 318
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||||| |||| |||||| | ||
Sbjct: 523 agagcctgtacttgataaactttgggagattaacgtcaaggccactattcttcttgtcca 464
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 463 ggatgcttctgctcac 448
>gb|DR052017.1|DR052017 RTCA1_1_H06.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_1_H06_A029 5', mRNA sequence
Length = 897
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 619 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 560
Query: 583 g 583
|
Sbjct: 559 g 559
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||||| |||| |||||| | ||
Sbjct: 764 agagcctgtacttgataaactttgggagattaacgtcaaggccactattcttcttgtcca 705
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 704 ggatgcttctgctcac 689
>gb|DR060310.1|DR060310 RTNIT1_27_C03.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_27_C03_A029 3', mRNA sequence
Length = 802
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 361 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 302
Query: 583 g 583
|
Sbjct: 301 g 301
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||||| |||| |||||| | ||
Sbjct: 506 agagcctgtacttgataaactttgggagattaacgtcaaggccactattcttcttgtcca 447
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 446 ggatgcttctgctcac 431
>gb|DR060394.1|DR060394 RTNIT1_27_C03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_27_C03_A029 5', mRNA sequence
Length = 870
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 572 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 513
Query: 583 g 583
|
Sbjct: 512 g 512
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||||| |||| |||||| | ||
Sbjct: 717 agagcctgtacttgataaactttgggagattaacgtcaaggccactattcttcttgtcca 658
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 657 ggatgcttctgctcac 642
>gb|DR094390.1|DR094390 STRR1_14_F10.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_14_F10_A033 3', mRNA sequence
Length = 832
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 232 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 291
Query: 583 g 583
|
Sbjct: 292 g 292
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||||| |||| |||||| | ||
Sbjct: 87 agagcctgtacttgataaactttgggagattaacgtcaaggccactattcttcttgtcca 146
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 147 ggatgcttctgctcac 162
>gb|DR094471.1|DR094471 STRR1_14_F10.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_14_F10_A033 5', mRNA sequence
Length = 792
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 420 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 479
Query: 583 g 583
|
Sbjct: 480 g 480
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||||| |||| |||||| | ||
Sbjct: 275 agagcctgtacttgataaactttgggagattaacgtcaaggccactattcttcttgtcca 334
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 335 ggatgcttctgctcac 350
>gb|DR744848.1|DR744848 RTCU1_25_G07.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_25_G07_A029 3', mRNA sequence
Length = 623
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 27 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 86
Query: 583 g 583
|
Sbjct: 87 g 87
>gb|DR744925.1|DR744925 RTCU1_25_G07.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_25_G07_A029 5', mRNA sequence
Length = 532
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 470 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 529
Query: 583 g 583
|
Sbjct: 530 g 530
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||||| |||| |||||| | ||
Sbjct: 325 agagcctgtacttgataaactttgggagattaacgtcaaggccactattcttcttgtcca 384
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 385 ggatgcttctgctcac 400
>gb|DT627059.1|DT627059 EST1160135 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAU42 5' end, mRNA sequence
Length = 895
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 484 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 543
Query: 583 g 583
|
Sbjct: 544 g 544
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||||| |||| |||||| | ||
Sbjct: 339 agagcctgtacttgataaactttgggagattaacgtcaaggccactattcttcttgtcca 398
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 399 ggatgcttctgctcac 414
>gb|DT627318.1|DT627318 EST1160394 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAX33 5' end, mRNA sequence
Length = 880
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| ||||||||||||| ||| |||
Sbjct: 414 atgtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatg 473
Query: 583 g 583
|
Sbjct: 474 g 474
>gb|BX248871.1|BX248871 BX248871 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP002A12, mRNA sequence
Length = 702
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| ||||| |||||||| |||| |||||| | ||
Sbjct: 384 agagcctgtacttgataaactttgggagattaatgtcaaggccactattcttcttgtcca 443
Query: 438 ggatgctgctcctcac 453
|||||||||| |||||
Sbjct: 444 ggatgctgctgctcac 459
Score = 42.1 bits (21), Expect = 0.043
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||| || || ||||||||||| || || ||||| |||||||||||| ||| |||
Sbjct: 529 atgtatggggttaccaagactgctcttttagggctcacagaggctcttgctgctgaaatg 588
Query: 583 g 583
|
Sbjct: 589 g 589
>gb|BX252904.1|BX252904 BX252904 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP074F20, mRNA sequence
Length = 460
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||||| |||| |||||| | ||
Sbjct: 287 agagcctgtacttgataaactttgggagattaacgtcaaggccactattcttcttgtcca 346
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 347 ggatgcttctgctcac 362
>gb|BF221218.1|BF221218 NXCI_156_B05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_156_B05 5' similar to Arabidopsis
thaliana sequence At4g05530 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 293
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||||| |||| |||||| | ||
Sbjct: 170 agagcctgtacttgataaactttgggagattaacgtcaaggccactattcttcttgtcca 229
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 230 ggatgcttctgctcac 245
>gb|BX681596.1|BX681596 BX681596 RS Pinus pinaster cDNA clone RS61G05, mRNA sequence
Length = 497
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| ||||| |||||||| |||| |||||| | ||
Sbjct: 382 agagcctgtacttgataaactttgggagattaatgtcaaggccactattcttcttgtcca 441
Query: 438 ggatgctgctcctcac 453
|||||||||| |||||
Sbjct: 442 ggatgctgctgctcac 457
>gb|CV144691.1|CV144691 EST855900 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPID895 5' end, mRNA sequence
Length = 599
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||||| |||| |||||| | ||
Sbjct: 427 agagcctgtacttgataaactttgggagattaacgtcaaggccactattcttcttgtcca 486
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 487 ggatgcttctgctcac 502
>gb|DR013166.1|DR013166 HEAT1_17_A09.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_17_A09_A029 5', mRNA sequence
Length = 540
Score = 46.1 bits (23), Expect = 0.003
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 391 gataagctgtgggatattaacgtcaaggcttctatccttcttattcaggatgctgctcct 450
||||| || ||||| |||||||||||||| |||| |||||| | ||||||||| || ||
Sbjct: 445 gataaactttgggagattaacgtcaaggccactattcttcttgtccaggatgcttctgct 504
Query: 451 cac 453
|||
Sbjct: 505 cac 507
>gb|DR097420.1|DR097420 STRR1_34_C04.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_34_C04_A033 5', mRNA sequence
Length = 854
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 525 gtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatgg 583
|||||| || || ||||||||||| || || ||||| ||||||||||||| ||| ||||
Sbjct: 460 gtatggggttaccaagactgctcttttagggctcacaaaggctcttgctgctgaaatgg 518
>gb|CO172567.1|CO172567 NDL1_30_B07.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_30_B07_A029 5', mRNA sequence
Length = 676
Score = 44.1 bits (22), Expect = 0.011
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 400 tgggatattaacgtcaaggcttctatccttcttattcaggatgctgctcctcac 453
||||| ||||| |||||||| |||| |||||| | |||||||||||| |||||
Sbjct: 278 tgggagattaatgtcaaggccactattcttcttgtccaggatgctgctgctcac 331
>gb|CO363997.1|CO363997 RTK1_13_C03.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_C03_A029 3', mRNA sequence
Length = 877
Score = 44.1 bits (22), Expect = 0.011
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 400 tgggatattaacgtcaaggcttctatccttcttattcaggatgctgctcctcac 453
||||| ||||| |||||||| |||| |||||| | |||||||||||| |||||
Sbjct: 508 tgggagattaatgtcaaggccactattcttcttgtccaggatgctgctgctcac 455
>gb|CO364078.1|CO364078 RTK1_13_C03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_C03_A029 5', mRNA sequence
Length = 856
Score = 44.1 bits (22), Expect = 0.011
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 400 tgggatattaacgtcaaggcttctatccttcttattcaggatgctgctcctcac 453
||||| ||||| |||||||| |||| |||||| | |||||||||||| |||||
Sbjct: 709 tgggagattaatgtcaaggccactattcttcttgtccaggatgctgctgctcac 656
>gb|CX650832.1|CX650832 COLD1_48_H10.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_48_H10_A029 3', mRNA sequence
Length = 752
Score = 44.1 bits (22), Expect = 0.011
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 400 tgggatattaacgtcaaggcttctatccttcttattcaggatgctgctcctcac 453
||||| ||||| |||||||| |||| |||||| | |||||||||||| |||||
Sbjct: 404 tgggagattaatgtcaaggccactattcttcttgtccaggatgctgctgctcac 351
>gb|DR011905.1|DR011905 HEAT1_8_E01.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_8_E01_A029 5', mRNA sequence
Length = 742
Score = 44.1 bits (22), Expect = 0.011
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 400 tgggatattaacgtcaaggcttctatccttcttattcaggatgctgctcctcac 453
||||| ||||| |||||||| |||| |||||| | |||||||||||| |||||
Sbjct: 319 tgggagattaatgtcaaggccactattcttcttgtccaggatgctgctgctcac 372
>gb|DR013810.1|DR013810 HEAT1_21_E01.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_21_E01_A029 5', mRNA sequence
Length = 856
Score = 44.1 bits (22), Expect = 0.011
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 400 tgggatattaacgtcaaggcttctatccttcttattcaggatgctgctcctcac 453
||||| ||||| |||||||| |||| |||||| | |||||||||||| |||||
Sbjct: 843 tgggagattaatgtcaaggccactattcttcttgtccaggatgctgctgctcac 790
>gb|DR071340.1|DR071340 RTDK1_19_E11.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_19_E11_A029 3', mRNA sequence
Length = 861
Score = 44.1 bits (22), Expect = 0.011
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 400 tgggatattaacgtcaaggcttctatccttcttattcaggatgctgctcctcac 453
||||| ||||| |||||||| |||| |||||| | |||||||||||| |||||
Sbjct: 150 tgggagattaatgtcaaggccactattcttcttgtccaggatgctgctgctcac 203
>gb|DR071417.1|DR071417 RTDK1_19_E11.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_19_E11_A029 5', mRNA sequence
Length = 701
Score = 44.1 bits (22), Expect = 0.011
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 400 tgggatattaacgtcaaggcttctatccttcttattcaggatgctgctcctcac 453
||||| ||||| |||||||| |||| |||||| | |||||||||||| |||||
Sbjct: 392 tgggagattaatgtcaaggccactattcttcttgtccaggatgctgctgctcac 445
>gb|DR102633.1|DR102633 STRR1_82_D05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_82_D05_A033 5', mRNA sequence
Length = 465
Score = 44.1 bits (22), Expect = 0.011
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 400 tgggatattaacgtcaaggcttctatccttcttattcaggatgctgctcctcac 453
||||| ||||| |||||||| |||| |||||| | |||||||||||| |||||
Sbjct: 329 tgggagattaatgtcaaggccactattcttcttgtccaggatgctgctgctcac 382
>gb|DR689840.1|DR689840 EST1079926 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACO06 3' end, mRNA sequence
Length = 841
Score = 44.1 bits (22), Expect = 0.011
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 400 tgggatattaacgtcaaggcttctatccttcttattcaggatgctgctcctcac 453
||||| ||||| |||||||| |||| |||||| | |||||||||||| |||||
Sbjct: 563 tgggagattaatgtcaaggccactattcttcttgtccaggatgctgctgctcac 616
>gb|DR691509.1|DR691509 EST1081596 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD931 3' end, mRNA sequence
Length = 874
Score = 44.1 bits (22), Expect = 0.011
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 400 tgggatattaacgtcaaggcttctatccttcttattcaggatgctgctcctcac 453
||||| ||||| |||||||| |||| |||||| | |||||||||||| |||||
Sbjct: 371 tgggagattaatgtcaaggccactattcttcttgtccaggatgctgctgctcac 424
>gb|DR692028.1|DR692028 EST1082115 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADH12 3' end, mRNA sequence
Length = 776
Score = 44.1 bits (22), Expect = 0.011
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 400 tgggatattaacgtcaaggcttctatccttcttattcaggatgctgctcctcac 453
||||| ||||| |||||||| |||| |||||| | |||||||||||| |||||
Sbjct: 463 tgggagattaatgtcaaggccactattcttcttgtccaggatgctgctgctcac 516
>gb|DT635813.1|DT635813 EST1150744 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGK86 3' end, mRNA sequence
Length = 752
Score = 44.1 bits (22), Expect = 0.011
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 400 tgggatattaacgtcaaggcttctatccttcttattcaggatgctgctcctcac 453
||||| ||||| |||||||| |||| |||||| | |||||||||||| |||||
Sbjct: 571 tgggagattaatgtcaaggccactattcttcttgtccaggatgctgctgctcac 624
>gb|BG317773.1|BG317773 NXPV_005_E08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_005_E08 5' similar to Arabidopsis
thaliana sequence At4g05530 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 505
Score = 42.1 bits (21), Expect = 0.043
Identities = 62/76 (81%)
Strand = Plus / Plus
Query: 378 agagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattca 437
|||| |||| || ||||| || ||||| |||||||||||| | |||| |||||| | ||
Sbjct: 329 agagcctgtacttgataaactttgggagattaacgtcaagnccactattcttcttgtcca 388
Query: 438 ggatgctgctcctcac 453
||||||| || |||||
Sbjct: 389 ggatgcttctgctcac 404
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 101,414
Number of Sequences: 355925
Number of extensions: 101414
Number of successful extensions: 26912
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26806
Number of HSP's gapped (non-prelim): 106
length of query: 992
length of database: 217,277,237
effective HSP length: 19
effective length of query: 973
effective length of database: 210,514,662
effective search space: 204830766126
effective search space used: 204830766126
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)