BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3067450.2.1
         (724 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BX678762.1|BX678762  BX678762 RS Pinus pinaster cDNA clon...    38   0.48 
gb|BX678852.1|BX678852  BX678852 RS Pinus pinaster cDNA clon...    38   0.48 
gb|CO370451.1|CO370451  RTK1_68_A10.b1_A029 Roots minus pota...    38   0.48 
>gb|BX678762.1|BX678762 BX678762 RS Pinus pinaster cDNA clone RS14G09, mRNA sequence
          Length = 549

 Score = 38.2 bits (19), Expect = 0.48
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 461 ccccagtcgtgcatgatccactt 483
           |||||||| ||||||||||||||
Sbjct: 256 ccccagtcatgcatgatccactt 234
>gb|BX678852.1|BX678852 BX678852 RS Pinus pinaster cDNA clone RS16A04, mRNA sequence
          Length = 591

 Score = 38.2 bits (19), Expect = 0.48
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 461 ccccagtcgtgcatgatccactt 483
           |||||||| ||||||||||||||
Sbjct: 256 ccccagtcatgcatgatccactt 234
>gb|CO370451.1|CO370451 RTK1_68_A10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
           RTK1_68_A10_A029 3', mRNA sequence
          Length = 824

 Score = 38.2 bits (19), Expect = 0.48
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 457 gtcaccccagtcgtgcatgatccactt 483
           |||||||||||| ||||| ||||||||
Sbjct: 173 gtcaccccagtcatgcataatccactt 147
  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 67,590
Number of Sequences: 355925
Number of extensions: 67590
Number of successful extensions: 16815
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16812
Number of HSP's gapped (non-prelim): 3
length of query: 724
length of database: 217,277,237
effective HSP length: 19
effective length of query: 705
effective length of database: 210,514,662
effective search space: 148412836710
effective search space used: 148412836710
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)