BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067213.2.1
(924 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI813230.1|AI813230 3E5 Pine Lambda Zap Xylem library Pi... 84 1e-014
gb|BX254710.1|BX254710 BX254710 Pinus pinaster differenciat... 84 1e-014
gb|CV034628.1|CV034628 RTNACL1_10_B08.g1_A029 Roots plus ad... 84 1e-014
gb|DR020121.1|DR020121 STRS1_34_F06.g1_A034 Shoot tip pitch... 84 1e-014
gb|DR058193.1|DR058193 RTNIT1_10_G08.b1_A029 Roots minus ni... 84 1e-014
gb|DR070290.1|DR070290 RTDK1_12_A01.g1_A029 Roots, dark Pin... 84 1e-014
gb|DR160216.1|DR160216 RTFE1_4_D07.g1_A029 Roots minus iron... 84 1e-014
gb|DR179388.1|DR179388 RTMNUT1_21_G02.g2_A029 Roots minus m... 84 1e-014
gb|DR683351.1|DR683351 EST1073427 Normalized pine embryo li... 84 1e-014
gb|DR688541.1|DR688541 EST1078626 Normalized pine embryo li... 84 1e-014
gb|DR691905.1|DR691905 EST1081992 Normalized pine embryo li... 84 1e-014
gb|DR691998.1|DR691998 EST1082085 Normalized pine embryo li... 84 1e-014
gb|DR744374.1|DR744374 RTCU1_22_B12.b1_A029 Roots plus adde... 84 1e-014
gb|DN627717.1|DN627717 EST978533 Subtracted pine embryo lib... 76 3e-012
gb|DN631846.1|DN631846 EST982662 Subtracted pine embryo lib... 76 3e-012
gb|DN633050.1|DN633050 EST983866 Subtracted pine embryo lib... 76 3e-012
gb|DN633594.1|DN633594 EST984410 Subtracted pine embryo lib... 76 3e-012
gb|DR695299.1|DR695299 EST1085392 Normalized pine embryo li... 76 3e-012
gb|DT629937.1|DT629937 EST1154349 Subtracted pine embryo li... 76 3e-012
gb|DT630617.1|DT630617 EST1155029 Subtracted pine embryo li... 76 3e-012
gb|CD022023.1|CD022023 NXNV_187_C12_F Nsf Xylem Normal wood... 74 1e-011
gb|DN626792.1|DN626792 EST977608 Subtracted pine embryo lib... 70 2e-010
gb|BX249114.1|BX249114 BX249114 Pinus pinaster differenciat... 64 1e-008
gb|CO159685.1|CO159685 FLD1_15_D05.b1_A029 Root flooded Pin... 64 1e-008
gb|CO370563.1|CO370563 RTK1_68_E06.g1_A029 Roots minus pota... 64 1e-008
gb|DR079445.1|DR079445 RTFEPL1_11_G04.b1_A029 Roots plus ad... 64 1e-008
gb|DR688931.1|DR688931 EST1079017 Normalized pine embryo li... 62 4e-008
gb|BX250828.1|BX250828 BX250828 Pinus pinaster differenciat... 56 3e-006
gb|BQ697926.1|BQ697926 NXPV_062_E11_F NXPV (Nsf Xylem Plani... 56 3e-006
gb|BX682353.2|BX682353 BX682353 Pinus pinaster differenciat... 56 3e-006
gb|DR020043.1|DR020043 STRS1_34_F06.b1_A034 Shoot tip pitch... 56 3e-006
gb|DR070204.1|DR070204 RTDK1_12_A01.b1_A029 Roots, dark Pin... 56 3e-006
gb|DR160155.1|DR160155 RTFE1_4_D07.b1_A029 Roots minus iron... 56 3e-006
gb|DR179313.1|DR179313 RTMNUT1_21_G02.b2_A029 Roots minus m... 56 3e-006
gb|DR386262.1|DR386262 RTHG1_14_A08.b1_A029 Roots plus adde... 56 3e-006
gb|BI398034.1|BI398034 NXPV_113_F09_F NXPV (Nsf Xylem Plani... 46 0.003
gb|CO370486.1|CO370486 RTK1_68_E06.b1_A029 Roots minus pota... 46 0.003
gb|DR092031.1|DR092031 RTAL1_25_E10.g1_A029 Roots plus adde... 46 0.003
gb|CF394567.1|CF394567 RTDS2_6_A05.b1_A021 Drought-stressed... 40 0.16
gb|CO166448.1|CO166448 FLD1_62_C12.b1_A029 Root flooded Pin... 40 0.16
gb|CO170051.1|CO170051 NDL1_11_H05.b1_A029 Needles control ... 40 0.16
gb|CO170133.1|CO170133 NDL1_11_H05.g1_A029 Needles control ... 40 0.16
>gb|AI813230.1|AI813230 3E5 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 771
Score = 83.8 bits (42), Expect = 1e-014
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 292 gaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaaccgg 233
Query: 831 gaagagaattacacatccagtcatgaacttctttgaagccca 872
|| |||| ||||||||| |||||||||| |||||| ||||
Sbjct: 232 aaacagaaccacacatccactcatgaacttttttgaaaccca 191
Score = 56.0 bits (28), Expect = 3e-006
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 310 ggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttggc 369
||||| |||||||| ||||||||||||| || ||||||||||| ||||| | ||||||
Sbjct: 753 ggcatagacatacccacagatacaacaatctctatgccttcacgaacagataaatttggt 694
Query: 370 cttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgttggg 429
| |||| ||| || || || || | ||| || |||||||| || ||||| ||||| ||
Sbjct: 693 cgaatgatatctttagagttaacaaggaaaatgtcaccaatatagagatgattcgtggga 634
Query: 430 acatagac 437
||||||||
Sbjct: 633 acatagac 626
Score = 40.1 bits (20), Expect = 0.16
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 557 tgttctgatctggtgatattgcagcactaatttgcttcga 596
||||||| ||||| || || |||||||| |||||||||||
Sbjct: 506 tgttctggtctggagaaatggcagcacttatttgcttcga 467
>gb|BX254710.1|BX254710 BX254710 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP103A06, mRNA sequence
Length = 581
Score = 83.8 bits (42), Expect = 1e-014
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 535 gaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaaccgg 476
Query: 831 gaagagaattacacatccagtcatgaacttctttgaagccca 872
|| |||| ||||||||| |||||||||| |||||| ||||
Sbjct: 475 aaacagaaccacacatccactcatgaacttttttgaaaccca 434
>gb|CV034628.1|CV034628 RTNACL1_10_B08.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_10_B08_A029 5', mRNA sequence
Length = 745
Score = 83.8 bits (42), Expect = 1e-014
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 263 gaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaaccgg 204
Query: 831 gaagagaattacacatccagtcatgaacttctttgaagccca 872
|| |||| ||||||||| |||||||||| |||||| ||||
Sbjct: 203 aaacagaaccacacatccactcatgaacttttttgaaaccca 162
Score = 40.1 bits (20), Expect = 0.16
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 557 tgttctgatctggtgatattgcagcactaatttgcttcga 596
||||||| ||||| || || |||||||| |||||||||||
Sbjct: 477 tgttctggtctggagaaatggcagcacttatttgcttcga 438
>gb|DR020121.1|DR020121 STRS1_34_F06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_34_F06_A034 5', mRNA sequence
Length = 781
Score = 83.8 bits (42), Expect = 1e-014
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 253 gaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaaccgg 194
Query: 831 gaagagaattacacatccagtcatgaacttctttgaagccca 872
|| |||| ||||||||| |||||||||| |||||| ||||
Sbjct: 193 aaacagaaccacacatccactcatgaacttttttgaaaccca 152
Score = 56.0 bits (28), Expect = 3e-006
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 310 ggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttggc 369
||||| |||||||| ||||||||||||| || ||||||||||| ||||| | ||||||
Sbjct: 714 ggcatagacatacccacagatacaacaatctctatgccttcacgaacagataaatttggt 655
Query: 370 cttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgttggg 429
| |||| ||| || || || || | ||| || |||||||| || ||||| ||||| ||
Sbjct: 654 cgaatgatatctttagagttaacaaggaaaatgtcaccaatatagagatgattcgtggga 595
Query: 430 acatagac 437
||||||||
Sbjct: 594 acatagac 587
Score = 40.1 bits (20), Expect = 0.16
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 557 tgttctgatctggtgatattgcagcactaatttgcttcga 596
||||||| ||||| || || |||||||| |||||||||||
Sbjct: 467 tgttctggtctggagaaatggcagcacttatttgcttcga 428
>gb|DR058193.1|DR058193 RTNIT1_10_G08.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_10_G08_A029 3', mRNA sequence
Length = 685
Score = 83.8 bits (42), Expect = 1e-014
Identities = 87/102 (85%)
Strand = Plus / Plus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 180 gaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaaccgg 239
Query: 831 gaagagaattacacatccagtcatgaacttctttgaagccca 872
|| |||| ||||||||| |||||||||| |||||| ||||
Sbjct: 240 aaacagaaccacacatccactcatgaacttttttgaaaccca 281
>gb|DR070290.1|DR070290 RTDK1_12_A01.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_12_A01_A029 5', mRNA sequence
Length = 712
Score = 83.8 bits (42), Expect = 1e-014
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 506 gaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaaccgg 447
Query: 831 gaagagaattacacatccagtcatgaacttctttgaagccca 872
|| |||| ||||||||| |||||||||| |||||| ||||
Sbjct: 446 aaacagaaccacacatccactcatgaacttttttgaaaccca 405
>gb|DR160216.1|DR160216 RTFE1_4_D07.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_4_D07_A029 5', mRNA sequence
Length = 807
Score = 83.8 bits (42), Expect = 1e-014
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 509 gaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaaccgg 450
Query: 831 gaagagaattacacatccagtcatgaacttctttgaagccca 872
|| |||| ||||||||| |||||||||| |||||| ||||
Sbjct: 449 aaacagaaccacacatccactcatgaacttttttgaaaccca 408
Score = 40.1 bits (20), Expect = 0.16
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 557 tgttctgatctggtgatattgcagcactaatttgcttcga 596
||||||| ||||| || || |||||||| |||||||||||
Sbjct: 722 tgttctggtctggagaaatggcagcacttatttgcttcga 683
>gb|DR179388.1|DR179388 RTMNUT1_21_G02.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_21_G02_A029 5', mRNA sequence
Length = 412
Score = 83.8 bits (42), Expect = 1e-014
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 254 gaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaaccgg 195
Query: 831 gaagagaattacacatccagtcatgaacttctttgaagccca 872
|| |||| ||||||||| |||||||||| |||||| ||||
Sbjct: 194 aaacagaaccacacatccactcatgaacttttttgaaaccca 153
>gb|DR683351.1|DR683351 EST1073427 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAG18 3' end, mRNA sequence
Length = 753
Score = 83.8 bits (42), Expect = 1e-014
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 294 gaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaaccgg 235
Query: 831 gaagagaattacacatccagtcatgaacttctttgaagccca 872
|| |||| ||||||||| |||||||||| |||||| ||||
Sbjct: 234 aaacagaaccacacatccactcatgaacttttttgaaaccca 193
Score = 52.0 bits (26), Expect = 4e-005
Identities = 98/122 (80%)
Strand = Plus / Minus
Query: 316 gacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttggccttatg 375
|||||||| ||||||||||||| || ||||||||||| ||||| | |||||| | |||
Sbjct: 749 gacatacccacagatacaacaatctctatgccttcacgaacagataaatttggtcgaatg 690
Query: 376 acatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgttgggacatag 435
| ||| || || || || | ||| || |||||||| || ||||| ||||| || ||||||
Sbjct: 689 atatctttagagttaacaaggaaaatgtcaccaatatagagatgattcgtgggaacatag 630
Query: 436 ac 437
||
Sbjct: 629 ac 628
Score = 40.1 bits (20), Expect = 0.16
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 557 tgttctgatctggtgatattgcagcactaatttgcttcga 596
||||||| ||||| || || |||||||| |||||||||||
Sbjct: 508 tgttctggtctggagaaatggcagcacttatttgcttcga 469
>gb|DR688541.1|DR688541 EST1078626 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC757 3' end, mRNA sequence
Length = 906
Score = 83.8 bits (42), Expect = 1e-014
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 345 gaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaaccgg 286
Query: 831 gaagagaattacacatccagtcatgaacttctttgaagccca 872
|| |||| ||||||||| |||||||||| |||||| ||||
Sbjct: 285 aaacagaaccacacatccactcatgaacttttttgaaaccca 244
Score = 60.0 bits (30), Expect = 2e-007
Identities = 105/130 (80%)
Strand = Plus / Minus
Query: 310 ggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttggc 369
||||| |||||||| ||||||||||||| || ||||||||||| ||||| | ||||||
Sbjct: 806 ggcatagacatacccacagatacaacaatctctatgccttcacgaacagataaatttggt 747
Query: 370 cttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgttggg 429
| |||| ||| || || || || | ||| || |||||||| || ||||| ||||| ||
Sbjct: 746 cgaatgatatctttagagttaacaaggaaaatgtcaccaatatagagatgattcgtggga 687
Query: 430 acatagacgc 439
||||||||||
Sbjct: 686 acatagacgc 677
Score = 40.1 bits (20), Expect = 0.16
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 557 tgttctgatctggtgatattgcagcactaatttgcttcga 596
||||||| ||||| || || |||||||| |||||||||||
Sbjct: 559 tgttctggtctggagaaatggcagcacttatttgcttcga 520
>gb|DR691905.1|DR691905 EST1081992 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADF49 3' end, mRNA sequence
Length = 768
Score = 83.8 bits (42), Expect = 1e-014
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 652 gaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaaccgg 593
Query: 831 gaagagaattacacatccagtcatgaacttctttgaagccca 872
|| |||| ||||||||| |||||||||| |||||| ||||
Sbjct: 592 aaacagaaccacacatccactcatgaacttttttgaaaccca 551
>gb|DR691998.1|DR691998 EST1082085 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADG73 3' end, mRNA sequence
Length = 744
Score = 83.8 bits (42), Expect = 1e-014
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 529 gaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaaccgg 470
Query: 831 gaagagaattacacatccagtcatgaacttctttgaagccca 872
|| |||| ||||||||| |||||||||| |||||| ||||
Sbjct: 469 aaacagaaccacacatccactcatgaacttttttgaaaccca 428
Score = 40.1 bits (20), Expect = 0.16
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 557 tgttctgatctggtgatattgcagcactaatttgcttcga 596
||||||| ||||| || || |||||||| |||||||||||
Sbjct: 743 tgttctggtctggagaaatggcagcacttatttgcttcga 704
>gb|DR744374.1|DR744374 RTCU1_22_B12.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_22_B12_A029 3', mRNA sequence
Length = 745
Score = 83.8 bits (42), Expect = 1e-014
Identities = 87/102 (85%)
Strand = Plus / Plus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 140 gaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaaccgg 199
Query: 831 gaagagaattacacatccagtcatgaacttctttgaagccca 872
|| |||| ||||||||| |||||||||| |||||| ||||
Sbjct: 200 aaacagaaccacacatccactcatgaacttttttgaaaccca 241
>gb|DN627717.1|DN627717 EST978533 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAO47, mRNA sequence
Length = 632
Score = 75.8 bits (38), Expect = 3e-012
Identities = 77/90 (85%)
Strand = Plus / Minus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 578 gaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaaccgg 519
Query: 831 gaagagaattacacatccagtcatgaactt 860
|| |||| ||||||||| ||||||||||
Sbjct: 518 aaacagaaccacacatccactcatgaactt 489
>gb|DN631846.1|DN631846 EST982662 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACG07, mRNA sequence
Length = 797
Score = 75.8 bits (38), Expect = 3e-012
Identities = 77/90 (85%)
Strand = Plus / Minus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 578 gaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaaccgg 519
Query: 831 gaagagaattacacatccagtcatgaactt 860
|| |||| ||||||||| ||||||||||
Sbjct: 518 aaacagaaccacacatccactcatgaactt 489
Score = 40.1 bits (20), Expect = 0.16
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 557 tgttctgatctggtgatattgcagcactaatttgcttcga 596
||||||| ||||| || || |||||||| |||||||||||
Sbjct: 792 tgttctggtctggagaaatggcagcacttatttgcttcga 753
>gb|DN633050.1|DN633050 EST983866 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACZ10, mRNA sequence
Length = 764
Score = 75.8 bits (38), Expect = 3e-012
Identities = 77/90 (85%)
Strand = Plus / Minus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 578 gaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaaccgg 519
Query: 831 gaagagaattacacatccagtcatgaactt 860
|| |||| ||||||||| ||||||||||
Sbjct: 518 aaacagaaccacacatccactcatgaactt 489
>gb|DN633594.1|DN633594 EST984410 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAD902, mRNA sequence
Length = 873
Score = 75.8 bits (38), Expect = 3e-012
Identities = 77/90 (85%)
Strand = Plus / Minus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 578 gaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaaccgg 519
Query: 831 gaagagaattacacatccagtcatgaactt 860
|| |||| ||||||||| ||||||||||
Sbjct: 518 aaacagaaccacacatccactcatgaactt 489
Score = 40.1 bits (20), Expect = 0.16
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 557 tgttctgatctggtgatattgcagcactaatttgcttcga 596
||||||| ||||| || || |||||||| |||||||||||
Sbjct: 792 tgttctggtctggagaaatggcagcacttatttgcttcga 753
>gb|DR695299.1|DR695299 EST1085392 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEN33 3' end, mRNA sequence
Length = 873
Score = 75.8 bits (38), Expect = 3e-012
Identities = 87/102 (85%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 344 gaagaagccatcaacaaactgaat-aaccaccatgtgatgtagaaagttattgcaaccgg 286
Query: 831 gaagagaattacacatccagtcatgaacttctttgaagccca 872
|| |||| ||||||||| |||||||||| |||||| ||||
Sbjct: 285 aaacagaaccacacatccactcatgaacttttttgaaaccca 244
Score = 56.0 bits (28), Expect = 3e-006
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 310 ggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttggc 369
||||| |||||||| ||||||||||||| || ||||||||||| ||||| | ||||||
Sbjct: 805 ggcatagacatacccacagatacaacaatctctatgccttcacgaacagataaatttggt 746
Query: 370 cttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgttggg 429
| |||| ||| || || || || | ||| || |||||||| || ||||| ||||| ||
Sbjct: 745 cgaatgatatctttagagttaacaaggaaaatgtcaccaatatagagatgattcgtggga 686
Query: 430 acatagac 437
||||||||
Sbjct: 685 acatagac 678
Score = 40.1 bits (20), Expect = 0.16
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 557 tgttctgatctggtgatattgcagcactaatttgcttcga 596
||||||| ||||| || || |||||||| |||||||||||
Sbjct: 558 tgttctggtctggagaaatggcagcacttatttgcttcga 519
>gb|DT629937.1|DT629937 EST1154349 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME289, mRNA sequence
Length = 898
Score = 75.8 bits (38), Expect = 3e-012
Identities = 77/90 (85%)
Strand = Plus / Minus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 600 gaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaaccgg 541
Query: 831 gaagagaattacacatccagtcatgaactt 860
|| |||| ||||||||| ||||||||||
Sbjct: 540 aaacagaaccacacatccactcatgaactt 511
Score = 40.1 bits (20), Expect = 0.16
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 557 tgttctgatctggtgatattgcagcactaatttgcttcga 596
||||||| ||||| || || |||||||| |||||||||||
Sbjct: 814 tgttctggtctggagaaatggcagcacttatttgcttcga 775
>gb|DT630617.1|DT630617 EST1155029 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIMEB07, mRNA sequence
Length = 905
Score = 75.8 bits (38), Expect = 3e-012
Identities = 77/90 (85%)
Strand = Plus / Minus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 599 gaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaaccgg 540
Query: 831 gaagagaattacacatccagtcatgaactt 860
|| |||| ||||||||| ||||||||||
Sbjct: 539 aaacagaaccacacatccactcatgaactt 510
Score = 40.1 bits (20), Expect = 0.16
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 557 tgttctgatctggtgatattgcagcactaatttgcttcga 596
||||||| ||||| || || |||||||| |||||||||||
Sbjct: 813 tgttctggtctggagaaatggcagcacttatttgcttcga 774
>gb|CD022023.1|CD022023 NXNV_187_C12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_187_C12 5' similar to Arabidopsis thaliana
sequence At1g43130 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 162
Score = 73.8 bits (37), Expect = 1e-011
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| |||||||||| |||| |||||||| ||||||||||| |||||||| | ||
Sbjct: 162 gaagaagccatcaacaannngaataaaccaccatgtgatgtagaaagttattgcaaccgg 103
Query: 831 gaagagaattacacatccagtcatgaacttctttgaagccca 872
|| |||| ||||||||| |||||||||| |||||| ||||
Sbjct: 102 aaacagaaccacacatccactcatgaacttttttgaaaccca 61
>gb|DN626792.1|DN626792 EST977608 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAA802, mRNA sequence
Length = 864
Score = 69.9 bits (35), Expect = 2e-010
Identities = 77/90 (85%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | |
Sbjct: 743 gaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaa--cg 800
Query: 831 gaagagaattacacatccagtcatgaactt 860
||| |||| ||||||||| ||||||||||
Sbjct: 801 gaacagaaccacacatccactcatgaactt 830
Score = 56.0 bits (28), Expect = 3e-006
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 310 ggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttggc 369
||||| |||||||| ||||||||||||| || ||||||||||| ||||| | ||||||
Sbjct: 282 ggcatagacatacccacagatacaacaatctctatgccttcacgaacagataaatttggt 341
Query: 370 cttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgttggg 429
| |||| ||| || || || || | ||| || |||||||| || ||||| ||||| ||
Sbjct: 342 cgaatgatatctttagagttaacaaggaaaatgtcaccaatatagagatgattcgtggga 401
Query: 430 acatagac 437
||||||||
Sbjct: 402 acatagac 409
Score = 40.1 bits (20), Expect = 0.16
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 557 tgttctgatctggtgatattgcagcactaatttgcttcga 596
||||||| ||||| || || |||||||| |||||||||||
Sbjct: 529 tgttctggtctggagaaatggcagcacttatttgcttcga 568
>gb|BX249114.1|BX249114 BX249114 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP020B10, mRNA sequence
Length = 698
Score = 63.9 bits (32), Expect = 1e-008
Identities = 137/172 (79%)
Strand = Plus / Minus
Query: 478 actgacgatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgacc 537
||||| || ||||| || ||||| ||||||||||| | ||| || |||||||| || ||
Sbjct: 555 actgaggaagtgataaatccaaaagcatattctcccatacgtgggtgccttattatagcc 496
Query: 538 acttccttgaacgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgat 597
||||| ||||| ||||| | || |||| |||||||| || ||||| |||||||| |||
Sbjct: 495 acttctttgaatgcctgggtatttcgatcaggtgatatggctgcacttatttgcttggat 436
Query: 598 gcattgtagatatgacgaacaagaggcatgcgcttaataatccactcgccaa 649
||| |||||||| ||||||||||| ||||| || |||||||| ||||
Sbjct: 435 gcagaatagatatgcttgacaagaggcattcgcttgattatccactccccaa 384
>gb|CO159685.1|CO159685 FLD1_15_D05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_15_D05_A029 3', mRNA sequence
Length = 754
Score = 63.9 bits (32), Expect = 1e-008
Identities = 263/340 (77%)
Strand = Plus / Plus
Query: 310 ggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttggc 369
||||| ||||| || ||||||| |||||| || |||||||| || ||||| | ||||||
Sbjct: 340 ggcattgacatccctccagataaaacaatctcaatgccttcccgtacagacaagtttggc 399
Query: 370 cttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgttggg 429
|| || |||||| ||||||| | | || || || |||||||| |||||||| |||||
Sbjct: 400 ctgatcacatcccttgaattgataagaaatatgtccccaatgtatagatggtttgttgga 459
Query: 430 acatagacgcagtaaagatcttcttgaccagaataactctggagggatactgacgatgtg 489
||||| || ||| |||| || || | ||| || | |||| || | ||||| || |||
Sbjct: 460 acatatacacagaaaagctcctcctcacccacatcattctgaagagcaactgaggaagtg 519
Query: 490 atgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttgaac 549
|| || ||||| ||||||||||| | || || |||||||| || ||||||| |||||
Sbjct: 520 ataaatccaaaagcatattctcccatgcgtgggtgccttattatagccacttctttgaat 579
Query: 550 gcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattgtagata 609
||||| | || |||| |||||||| || ||||| |||||||| |||||| ||||||
Sbjct: 580 gcctgggtatttcgatcaggtgatatggctgcacttatttgcttggatgcagaatagata 639
Query: 610 tgacgaacaagaggcatgcgcttaataatccactcgccaa 649
|| ||||||||||| ||||| || |||||||| ||||
Sbjct: 640 tgcttgacaagaggcattcgcttgattatccactccccaa 679
>gb|CO370563.1|CO370563 RTK1_68_E06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_68_E06_A029 5', mRNA sequence
Length = 774
Score = 63.9 bits (32), Expect = 1e-008
Identities = 263/340 (77%)
Strand = Plus / Plus
Query: 310 ggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttggc 369
||||| ||||| || ||||||| |||||| || |||||||| || ||||| | ||||||
Sbjct: 369 ggcattgacatccctccagataaaacaatctcaatgccttcccgtacagacaagtttggc 428
Query: 370 cttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgttggg 429
|| || |||||| ||||||| | | || || || |||||||| |||||||| |||||
Sbjct: 429 ctgatcacatcccttgaattgataagaaatatgtccccaatgtatagatggtttgttgga 488
Query: 430 acatagacgcagtaaagatcttcttgaccagaataactctggagggatactgacgatgtg 489
||||| || ||| |||| || || | ||| || | |||| || | ||||| || |||
Sbjct: 489 acatatacacagaaaagctcctcctcacccacatcattctgaagagcaactgaggaagtg 548
Query: 490 atgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttgaac 549
|| || ||||| ||||||||||| | || || |||||||| || ||||||| |||||
Sbjct: 549 ataaatccaaaagcatattctcccatgcgtgggtgccttattatagccacttctttgaat 608
Query: 550 gcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattgtagata 609
||||| | || |||| |||||||| || ||||| |||||||| |||||| ||||||
Sbjct: 609 gcctgggtatttcgatcaggtgatatggctgcacttatttgcttggatgcagaatagata 668
Query: 610 tgacgaacaagaggcatgcgcttaataatccactcgccaa 649
|| ||||||||||| ||||| || |||||||| ||||
Sbjct: 669 tgcttgacaagaggcattcgcttgattatccactccccaa 708
>gb|DR079445.1|DR079445 RTFEPL1_11_G04.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_11_G04_A029 3', mRNA sequence
Length = 903
Score = 63.9 bits (32), Expect = 1e-008
Identities = 263/340 (77%)
Strand = Plus / Plus
Query: 310 ggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttggc 369
||||| ||||| || ||||||| |||||| || |||||||| || ||||| | ||||||
Sbjct: 350 ggcattgacatccctccagataaaacaatctcaatgccttcccgtacagacaagtttggc 409
Query: 370 cttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgttggg 429
|| || |||||| ||||||| | | || || || |||||||| |||||||| |||||
Sbjct: 410 ctgatcacatcccttgaattgataagaaatatgtccccaatgtatagatggtttgttgga 469
Query: 430 acatagacgcagtaaagatcttcttgaccagaataactctggagggatactgacgatgtg 489
||||| || ||| |||| || || | ||| || | |||| || | ||||| || |||
Sbjct: 470 acatatacacagaaaagctcctcctcacccacatcattctgaagagcaactgaggaagtg 529
Query: 490 atgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttgaac 549
|| || ||||| ||||||||||| | || || |||||||| || ||||||| |||||
Sbjct: 530 ataaatccaaaagcatattctcccatgcgtgggtgccttattatagccacttctttgaat 589
Query: 550 gcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattgtagata 609
||||| | || |||| |||||||| || ||||| |||||||| |||||| ||||||
Sbjct: 590 gcctgggtatttcgatcaggtgatatggctgcacttatttgcttggatgcagaatagata 649
Query: 610 tgacgaacaagaggcatgcgcttaataatccactcgccaa 649
|| ||||||||||| ||||| || |||||||| ||||
Sbjct: 650 tgcttgacaagaggcattcgcttgattatccactccccaa 689
>gb|DR688931.1|DR688931 EST1079017 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACC30 3' end, mRNA sequence
Length = 808
Score = 61.9 bits (31), Expect = 4e-008
Identities = 85/102 (83%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 771 gaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
|||||| ||||||||||| ||||| || |||| ||||||||||| |||||||| | ||
Sbjct: 343 gaagaagccatcaacaaactgaataaa--accatgtgatgtagaaagttattgcaaccgg 286
Query: 831 gaagagaattacacatccagtcatgaacttctttgaagccca 872
|| |||| ||||||||| |||||||||| |||||| ||||
Sbjct: 285 aaacagaaccacacatccactcatgaacttttttgaaaccca 244
Score = 40.1 bits (20), Expect = 0.16
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 557 tgttctgatctggtgatattgcagcactaatttgcttcga 596
||||||| ||||| || || |||||||| |||||||||||
Sbjct: 557 tgttctggtctggagaaatggcagcacttatttgcttcga 518
>gb|BX250828.1|BX250828 BX250828 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP041H04, mRNA sequence
Length = 574
Score = 56.0 bits (28), Expect = 3e-006
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 310 ggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttggc 369
||||| |||||||| ||||||||||||| || ||||||||||| ||||| | ||||||
Sbjct: 334 ggcatagacatacccacagatacaacaatctctatgccttcacgaacagataaatttggt 275
Query: 370 cttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgttggg 429
| |||| ||| || || || || | ||| || |||||||| || ||||| ||||| ||
Sbjct: 274 cgaatgatatctttagagttaacaaggaaaatgtcaccaatatagagatgattcgtggga 215
Query: 430 acatagac 437
||||||||
Sbjct: 214 acatagac 207
Score = 40.1 bits (20), Expect = 0.16
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 557 tgttctgatctggtgatattgcagcactaatttgcttcga 596
||||||| ||||| || || |||||||| |||||||||||
Sbjct: 87 tgttctggtctggagaaatggcagcacttatttgcttcga 48
>gb|BQ697926.1|BQ697926 NXPV_062_E11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_062_E11 5' similar to Arabidopsis
thaliana sequence At2g20120 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 515
Score = 56.0 bits (28), Expect = 3e-006
Identities = 136/172 (79%)
Strand = Plus / Minus
Query: 478 actgacgatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgacc 537
||||| || ||||| || ||||| ||||||||||| | || || |||||||| || ||
Sbjct: 277 actgaggaagtgataaatccaaaagcatattctcccatgcgtgggtgccttattatagcc 218
Query: 538 acttccttgaacgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgat 597
||||| ||||| ||||| | || |||| |||||||| || ||||| |||||||| |||
Sbjct: 217 acttctttgaatgcctgggtatttcgatcaggtgatatggctgcacttatttgcttggat 158
Query: 598 gcattgtagatatgacgaacaagaggcatgcgcttaataatccactcgccaa 649
||| |||||||| ||||||||||| ||||| || |||||||| ||||
Sbjct: 157 gcagaatagatatgcttgacaagaggcattcgcttgattatccactccccaa 106
>gb|BX682353.2|BX682353 BX682353 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 115D08 similar to P0677H08.7 protein, mRNA
sequence
Length = 627
Score = 56.0 bits (28), Expect = 3e-006
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 310 ggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttggc 369
||||| |||||||| ||||||||||||| || ||||||||||| ||||| | ||||||
Sbjct: 348 ggcatagacatacccacagatacaacaatctctatgccttcacgaacagataaatttggt 289
Query: 370 cttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgttggg 429
| |||| ||| || || || || | ||| || |||||||| || ||||| ||||| ||
Sbjct: 288 cgaatgatatctttagagttaacaaggaaaatgtcaccaatatagagatgattcgtggga 229
Query: 430 acatagac 437
||||||||
Sbjct: 228 acatagac 221
Score = 40.1 bits (20), Expect = 0.16
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 557 tgttctgatctggtgatattgcagcactaatttgcttcga 596
||||||| ||||| || || |||||||| |||||||||||
Sbjct: 101 tgttctggtctggagaaatggcagcacttatttgcttcga 62
>gb|DR020043.1|DR020043 STRS1_34_F06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_34_F06_A034 3', mRNA sequence
Length = 867
Score = 56.0 bits (28), Expect = 3e-006
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 310 ggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttggc 369
||||| |||||||| ||||||||||||| || ||||||||||| ||||| | ||||||
Sbjct: 489 ggcatagacatacccacagatacaacaatctctatgccttcacgaacagataaatttggt 430
Query: 370 cttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgttggg 429
| |||| ||| || || || || | ||| || |||||||| || ||||| ||||| ||
Sbjct: 429 cgaatgatatctttagagttaacaaggaaaatgtcaccaatatagagatgattcgtggga 370
Query: 430 acatagac 437
||||||||
Sbjct: 369 acatagac 362
Score = 40.1 bits (20), Expect = 0.16
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 557 tgttctgatctggtgatattgcagcactaatttgcttcga 596
||||||| ||||| || || |||||||| |||||||||||
Sbjct: 242 tgttctggtctggagaaatggcagcacttatttgcttcga 203
>gb|DR070204.1|DR070204 RTDK1_12_A01.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_12_A01_A029 3', mRNA sequence
Length = 857
Score = 56.0 bits (28), Expect = 3e-006
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 310 ggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttggc 369
||||| |||||||| ||||||||||||| || ||||||||||| ||||| | ||||||
Sbjct: 335 ggcatagacatacccacagatacaacaatctctatgccttcacgaacagataaatttggt 276
Query: 370 cttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgttggg 429
| |||| ||| || || || || | ||| || |||||||| || ||||| ||||| ||
Sbjct: 275 cgaatgatatctttagagttaacaaggaaaatgtcaccaatatagagatgattcgtggga 216
Query: 430 acatagac 437
||||||||
Sbjct: 215 acatagac 208
Score = 40.1 bits (20), Expect = 0.16
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 557 tgttctgatctggtgatattgcagcactaatttgcttcga 596
||||||| ||||| || || |||||||| |||||||||||
Sbjct: 88 tgttctggtctggagaaatggcagcacttatttgcttcga 49
>gb|DR160155.1|DR160155 RTFE1_4_D07.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_4_D07_A029 3', mRNA sequence
Length = 723
Score = 56.0 bits (28), Expect = 3e-006
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 310 ggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttggc 369
||||| |||||||| ||||||||||||| || ||||||||||| ||||| | ||||||
Sbjct: 215 ggcatagacatacccacagatacaacaatctctatgccttcacgaacagataaatttggt 156
Query: 370 cttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgttggg 429
| |||| ||| || || || || | ||| || |||||||| || ||||| ||||| ||
Sbjct: 155 cgaatgatatctttagagttaacaaggaaaatgtcaccaatatagagatgattcgtggga 96
Query: 430 acatagac 437
||||||||
Sbjct: 95 acatagac 88
>gb|DR179313.1|DR179313 RTMNUT1_21_G02.b2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_21_G02_A029 3', mRNA sequence
Length = 698
Score = 56.0 bits (28), Expect = 3e-006
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 310 ggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttggc 369
||||| |||||||| ||||||||||||| || ||||||||||| ||||| | ||||||
Sbjct: 283 ggcatagacatacccacagatacaacaatctctatgccttcacgaacagataaatttggt 224
Query: 370 cttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgttggg 429
| |||| ||| || || || || | ||| || |||||||| || ||||| ||||| ||
Sbjct: 223 cgaatgatatctttagagttaacaaggaaaatgtcaccaatatagagatgattcgtggga 164
Query: 430 acatagac 437
||||||||
Sbjct: 163 acatagac 156
>gb|DR386262.1|DR386262 RTHG1_14_A08.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_14_A08_A029 3', mRNA sequence
Length = 663
Score = 56.0 bits (28), Expect = 3e-006
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 310 ggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttggc 369
||||| |||||||| ||||||||||||| || ||||||||||| ||||| | ||||||
Sbjct: 274 ggcatagacatacccacagatacaacaatctctatgccttcacgaacagataaatttggt 215
Query: 370 cttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgttggg 429
| |||| ||| || || || || | ||| || |||||||| || ||||| ||||| ||
Sbjct: 214 cgaatgatatctttagagttaacaaggaaaatgtcaccaatatagagatgattcgtggga 155
Query: 430 acatagac 437
||||||||
Sbjct: 154 acatagac 147
>gb|BI398034.1|BI398034 NXPV_113_F09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_113_F09 5' similar to Arabidopsis
thaliana sequence At2g20120 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 505
Score = 46.1 bits (23), Expect = 0.003
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 563 gatctggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagag 622
|||| |||||||| || ||||| |||||||| |||||| |||||||| |||||||
Sbjct: 192 gatcaggtgatatggctgcacttatttgcttggatgcagaatagatatgcttgacaagag 133
Query: 623 gcatgcgcttaataatccactcgccaa 649
|||| ||||| || |||||||| ||||
Sbjct: 132 gcattcgcttgattatccactccccaa 106
>gb|CO370486.1|CO370486 RTK1_68_E06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_68_E06_A029 3', mRNA sequence
Length = 836
Score = 46.1 bits (23), Expect = 0.003
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 563 gatctggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagag 622
|||| |||||||| || ||||| |||||||| |||||| |||||||| |||||||
Sbjct: 35 gatcaggtgatatggctgcacttatttgcttggatgcagaatagatatgcttgacaagag 94
Query: 623 gcatgcgcttaataatccactcgccaa 649
|||| ||||| || |||||||| ||||
Sbjct: 95 gcattcgcttgattatccactccccaa 121
>gb|DR092031.1|DR092031 RTAL1_25_E10.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_25_E10_A029 5', mRNA sequence
Length = 488
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 326 cagatacaacaatttcgatgccttcacgcacagaaagatttgg 368
||||||||||||| || ||||||||||| ||||| | ||||||
Sbjct: 413 cagatacaacaatctctatgccttcacgaacagataaatttgg 455
>gb|CF394567.1|CF394567 RTDS2_6_A05.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_6_A05_A021 3', mRNA sequence
Length = 560
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 239 agcttcagcttctgcttggt 258
||||||||||||||||||||
Sbjct: 350 agcttcagcttctgcttggt 369
>gb|CO166448.1|CO166448 FLD1_62_C12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_62_C12_A029 3', mRNA sequence
Length = 741
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 239 agcttcagcttctgcttggt 258
||||||||||||||||||||
Sbjct: 564 agcttcagcttctgcttggt 583
>gb|CO170051.1|CO170051 NDL1_11_H05.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_11_H05_A029 3', mRNA sequence
Length = 635
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 239 agcttcagcttctgcttggt 258
||||||||||||||||||||
Sbjct: 425 agcttcagcttctgcttggt 444
>gb|CO170133.1|CO170133 NDL1_11_H05.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_11_H05_A029 5', mRNA sequence
Length = 621
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 239 agcttcagcttctgcttggt 258
||||||||||||||||||||
Sbjct: 403 agcttcagcttctgcttggt 422
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 120,052
Number of Sequences: 355925
Number of extensions: 120052
Number of successful extensions: 32684
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 32593
Number of HSP's gapped (non-prelim): 90
length of query: 924
length of database: 217,277,237
effective HSP length: 19
effective length of query: 905
effective length of database: 210,514,662
effective search space: 190515769110
effective search space used: 190515769110
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)