BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3064721.2.1
(689 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF396558.1|CF396558 RTDS2_22_C09.g1_A021 Drought-stresse... 48 5e-004
gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo li... 48 5e-004
gb|DT633664.1|DT633664 EST1148595 Normalized pine embryo li... 48 5e-004
gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Ve... 44 0.007
gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Ver... 44 0.007
gb|DR744023.1|DR744023 RTCU1_19_F03.g1_A029 Roots plus adde... 44 0.007
>gb|CF396558.1|CF396558 RTDS2_22_C09.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_C09_A021 5', mRNA sequence
Length = 797
Score = 48.1 bits (24), Expect = 5e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 3 atgcttgtggttgggcatatggcatgaa 30
|||||||||||||||||||||| |||||
Sbjct: 761 atgcttgtggttgggcatatgggatgaa 734
>gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABI03 3' end, mRNA sequence
Length = 866
Score = 48.1 bits (24), Expect = 5e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 atgcttgtggttgggcatatggcatgaa 30
|||||||||||||||||||||| |||||
Sbjct: 537 atgcttgtggttgggcatatgggatgaa 564
>gb|DT633664.1|DT633664 EST1148595 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFX37 3' end, mRNA sequence
Length = 812
Score = 48.1 bits (24), Expect = 5e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 atgcttgtggttgggcatatggcatgaa 30
|||||||||||||||||||||| |||||
Sbjct: 545 atgcttgtggttgggcatatgggatgaa 572
>gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5', mRNA sequence
Length = 465
Score = 44.1 bits (22), Expect = 0.007
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||||||||| ||||||||||| ||||| || ||||||
Sbjct: 90 atgcttgtggatgggcatatggaatgaatatatttgat 127
>gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5' similar to Arabidopsis thaliana sequence
At3g61130 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 44.1 bits (22), Expect = 0.007
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||||||||| ||||||||||| ||||| || ||||||
Sbjct: 90 atgcttgtggatgggcatatggaatgaatatatttgat 127
>gb|DR744023.1|DR744023 RTCU1_19_F03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_F03_A029 5', mRNA sequence
Length = 764
Score = 44.1 bits (22), Expect = 0.007
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 14 tgggcatatggcatgaacatgtttgatttg 43
||||||||||| |||||||| |||||||||
Sbjct: 712 tgggcatatggaatgaacatctttgatttg 683
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 63,624
Number of Sequences: 355925
Number of extensions: 63624
Number of successful extensions: 16337
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16329
Number of HSP's gapped (non-prelim): 8
length of query: 689
length of database: 217,277,237
effective HSP length: 19
effective length of query: 670
effective length of database: 210,514,662
effective search space: 141044823540
effective search space used: 141044823540
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)