BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3054736.2.1
(725 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ696389.1|BQ696389 NXPV_040_F05_F NXPV (Nsf Xylem Plani... 58 5e-007
gb|DR694977.1|DR694977 EST1085070 Normalized pine embryo li... 58 5e-007
gb|DT638989.1|DT638989 EST1153920 Normalized pine embryo li... 58 5e-007
gb|CD021316.1|CD021316 NXNV_069_C08_F Nsf Xylem Normal wood... 54 8e-006
gb|BI397792.1|BI397792 NXPV_107_E10_F NXPV (Nsf Xylem Plani... 52 3e-005
gb|CX715693.1|CX715693 RTPQ1_35_H08.g1_A032 Roots treated w... 46 0.002
gb|DR109699.1|DR109699 RTS1_4_C10.b1_A029 Roots minus sulfu... 46 0.002
gb|DR693981.1|DR693981 EST1084071 Normalized pine embryo li... 46 0.002
>gb|BQ696389.1|BQ696389 NXPV_040_F05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_040_F05 5' similar to Arabidopsis
thaliana sequence At3g14960 galactosyltransferase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 456
Score = 58.0 bits (29), Expect = 5e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 180 gcatggatgcttgctatgaatgtaaagcatgaagacaaccg 220
||||||||||||||||||||||| || |||||||| |||||
Sbjct: 181 gcatggatgcttgctatgaatgtcaaccatgaagataaccg 221
>gb|DR694977.1|DR694977 EST1085070 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEJ07 3' end, mRNA sequence
Length = 793
Score = 58.0 bits (29), Expect = 5e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 180 gcatggatgcttgctatgaatgtaaagcatgaagacaaccg 220
||||||||||||||||||||||| || |||||||| |||||
Sbjct: 421 gcatggatgcttgctatgaatgtcaaccatgaagataaccg 461
>gb|DT638989.1|DT638989 EST1153920 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHL79 3' end, mRNA sequence
Length = 850
Score = 58.0 bits (29), Expect = 5e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 180 gcatggatgcttgctatgaatgtaaagcatgaagacaaccg 220
||||||||||||||||||||||| || |||||||| |||||
Sbjct: 429 gcatggatgcttgctatgaatgtcaaccatgaagataaccg 469
>gb|CD021316.1|CD021316 NXNV_069_C08_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_069_C08 5' similar to Arabidopsis thaliana
sequence At2g26100 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 112
Score = 54.0 bits (27), Expect = 8e-006
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 180 gcatggatgcttgctatgaatgtaaagcatgaaga 214
||||||||||||||||||||||| ||||||||||
Sbjct: 32 gcatggatgcttgctatgaatgttgagcatgaaga 66
>gb|BI397792.1|BI397792 NXPV_107_E10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_107_E10 5' similar to Arabidopsis
thaliana sequence At3g14960 galactosyltransferase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 267
Score = 52.0 bits (26), Expect = 3e-005
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 180 gcatggatgcttgctatgaatgtaaagcatgaagacaaccg 220
||||||||||| ||||||||||| || |||||||| |||||
Sbjct: 188 gcatggatgctngctatgaatgtcaaccatgaagataaccg 228
>gb|CX715693.1|CX715693 RTPQ1_35_H08.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_35_H08_A032 5', mRNA sequence
Length = 649
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 180 gcatggatgcttgctatgaatgtaaagcatgaaga 214
||||||||||| ||||||||||| ||||||||||
Sbjct: 578 gcatggatgctcgctatgaatgttgagcatgaaga 544
>gb|DR109699.1|DR109699 RTS1_4_C10.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_4_C10_A029 3', mRNA sequence
Length = 808
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 180 gcatggatgcttgctatgaatgtaaagcatgaaga 214
||||||||||| ||||||||||| ||||||||||
Sbjct: 483 gcatggatgctcgctatgaatgttgagcatgaaga 449
>gb|DR693981.1|DR693981 EST1084071 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE664 3' end, mRNA sequence
Length = 817
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 180 gcatggatgcttgctatgaatgtaaagcatgaaga 214
||||||||||| ||||||||||| ||||||||||
Sbjct: 645 gcatggatgctcgctatgaatgttgagcatgaaga 679
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 100,715
Number of Sequences: 355925
Number of extensions: 100715
Number of successful extensions: 25216
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25206
Number of HSP's gapped (non-prelim): 10
length of query: 725
length of database: 217,277,237
effective HSP length: 19
effective length of query: 706
effective length of database: 210,514,662
effective search space: 148623351372
effective search space used: 148623351372
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)