BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023825.2.1
(1094 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO158387.1|CO158387 FLD1_6_C10.g1_A029 Root flooded Pinu... 141 7e-032
gb|CO361728.1|CO361728 NDL2_6_E01.g1_A029 Needles control 2... 141 7e-032
gb|CO361739.1|CO361739 NDL2_6_F01.g1_A029 Needles control 2... 141 7e-032
gb|CV031923.1|CV031923 RTNACL1_4_D03.g1_A029 Roots plus add... 141 7e-032
gb|DR098106.1|DR098106 STRR1_39_D06.b1_A033 Stem Response R... 141 7e-032
gb|CO198952.1|CO198952 GEO1_17_E10.g1_A029 Root gravitropis... 133 2e-029
gb|CF395619.1|CF395619 RTDS2_12_C07.g1_A021 Drought-stresse... 119 3e-025
gb|CO175700.1|CO175700 NDL1_56_A03.g1_A029 Needles control ... 109 2e-022
gb|DR098180.1|DR098180 STRR1_39_D06.g1_A033 Stem Response R... 92 6e-017
gb|CO198875.1|CO198875 GEO1_17_E10.b1_A029 Root gravitropis... 88 9e-016
gb|CF671078.1|CF671078 RTCNT1_54_C08.g1_A029 Root control P... 84 1e-014
gb|DR024916.1|DR024916 STRS1_68_H05.b1_A034 Shoot tip pitch... 78 9e-013
gb|AW290111.1|AW290111 NXNV010D03F Nsf Xylem Normal wood Ve... 74 1e-011
gb|BE662302.1|BE662302 ST84/ST84D02 Pine TriplEx shoot tip ... 74 1e-011
gb|CD026738.1|CD026738 NXNV010D03 Nsf Xylem Normal wood Ver... 74 1e-011
gb|CF475292.1|CF475292 RTWW2_13_H04.b1_A021 Well-watered lo... 74 1e-011
gb|CO366415.1|CO366415 RTK1_27_E11.g1_A029 Roots minus pota... 74 1e-011
gb|CV036192.1|CV036192 RTNACL1_57_H03.b1_A029 Roots plus ad... 74 1e-011
gb|CX647947.1|CX647947 COLD1_25_C01.g1_A029 Root cold Pinus... 74 1e-011
gb|DR012575.1|DR012575 HEAT1_13_E12.g1_A029 Root at 37 C fo... 74 1e-011
gb|DR012617.1|DR012617 HEAT1_14_A11.b1_A029 Root at 37 C fo... 74 1e-011
gb|DR012699.1|DR012699 HEAT1_14_A11.g1_A029 Root at 37 C fo... 74 1e-011
gb|DR019100.1|DR019100 STRS1_27_G03.g1_A034 Shoot tip pitch... 74 1e-011
gb|DR052273.1|DR052273 RTCA1_3_C03.g1_A029 Roots minus calc... 74 1e-011
gb|DR744660.1|DR744660 RTCU1_24_B03.b1_A029 Roots plus adde... 74 1e-011
gb|DR744725.1|DR744725 RTCU1_24_B03.g1_A029 Roots plus adde... 74 1e-011
gb|AF283816.1|AF283816 Pinus taeda calreticulin mRNA, compl... 74 1e-011
gb|AW289804.1|AW289804 NXNV006D09F Nsf Xylem Normal wood Ve... 70 2e-010
gb|AL750674.1|AL750674 AL750674 RN Pinus pinaster cDNA clon... 70 2e-010
gb|AJ541803.1|AJ541803 AJ541803 Pinus pinaster differentiat... 70 2e-010
gb|BF220810.1|BF220810 NXCI_154_B05_F NXCI (Nsf Xylem Compr... 70 2e-010
gb|CD028390.1|CD028390 NXNV006D09 Nsf Xylem Normal wood Ver... 70 2e-010
gb|DR091549.1|DR091549 RTAL1_22_H09.b1_A029 Roots plus adde... 66 3e-009
gb|CV031851.1|CV031851 RTNACL1_4_D03.b1_A029 Roots plus add... 64 1e-008
gb|DR090199.1|DR090199 RTAL1_13_H05.b1_A029 Roots plus adde... 64 1e-008
gb|AA556373.1|AA556373 228 Loblolly pine C Pinus taeda cDNA... 44 0.012
gb|BQ197445.1|BQ197445 NXLV114_D12_F NXLV (Nsf Xylem Late w... 44 0.012
gb|CD016626.1|CD016626 NXCI_040_C03_F NXCI (Nsf Xylem Compr... 44 0.012
gb|CF393816.1|CF393816 RTDS2_1_A10.g1_A021 Drought-stressed... 44 0.012
gb|CF396280.1|CF396280 RTDS2_21_H12.b1_A021 Drought-stresse... 44 0.012
gb|CF396421.1|CF396421 RTDS2_21_H12.g1_A021 Drought-stresse... 44 0.012
gb|CF668421.1|CF668421 RTCNT1_36_H10.b1_A029 Root control P... 44 0.012
gb|CF668506.1|CF668506 RTCNT1_36_H10.g1_A029 Root control P... 44 0.012
gb|CF670258.1|CF670258 RTCNT1_49_C06.b1_A029 Root control P... 44 0.012
gb|CF670333.1|CF670333 RTCNT1_49_C06.g1_A029 Root control P... 44 0.012
gb|CR393186.1|CR393186 CR393186 RN Pinus pinaster cDNA clon... 44 0.012
gb|CO200857.1|CO200857 RTCNT2_2_B11.b1_A029 Root control 2 ... 44 0.012
gb|CO364984.1|CO364984 RTK1_23_A06.b1_A029 Roots minus pota... 44 0.012
gb|CV033612.1|CV033612 RTNACL1_35_C08.g1_A029 Roots plus ad... 44 0.012
gb|CV034792.1|CV034792 RTNACL1_11_D05.g1_A029 Roots plus ad... 44 0.012
gb|DR011478.1|DR011478 HEAT1_6_A10.b1_A029 Root at 37 C for... 44 0.012
gb|DR021364.1|DR021364 STRS1_44_D10.b1_A034 Shoot tip pitch... 44 0.012
gb|DR021438.1|DR021438 STRS1_44_D10.g1_A034 Shoot tip pitch... 44 0.012
gb|DR022118.1|DR022118 STRS1_49_A10.b1_A034 Shoot tip pitch... 44 0.012
gb|DR058951.1|DR058951 RTNIT1_14_G10.g1_A029 Roots minus ni... 44 0.012
gb|DR091933.1|DR091933 RTAL1_25_A06.b1_A029 Roots plus adde... 44 0.012
gb|DR097639.1|DR097639 STRR1_36_C01.b1_A033 Stem Response R... 44 0.012
gb|DR110346.1|DR110346 RTS1_10_H03.b1_A029 Roots minus sulf... 44 0.012
gb|DR167453.1|DR167453 RTPHOS1_18_H05.g1_A029 Roots minus p... 44 0.012
gb|DR389103.1|DR389103 RTHG1_32_A09.g1_A029 Roots plus adde... 44 0.012
gb|CF395538.1|CF395538 RTDS2_12_C07.b1_A021 Drought-stresse... 40 0.19
>gb|CO158387.1|CO158387 FLD1_6_C10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_6_C10_A029 5', mRNA sequence
Length = 802
Score = 141 bits (71), Expect = 7e-032
Identities = 224/275 (81%)
Strand = Plus / Plus
Query: 216 aatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggt 275
||||||||||||||||| |||||||| |||| |||||||||||| |||||||||||
Sbjct: 88 aatccagcatacaaggggccttggaaggcgaagaaaattaaaaatcccaactacaagggg 147
Query: 276 aaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtg 335
|| ||||| || |||||| | || |||||||| ||||| ||||||||||||||||||||
Sbjct: 148 aagtggaaaactccatgggttgacaatccagaatttgaagatgatccagatctttatgtc 207
Query: 336 ctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttc 395
| ||||||||||| ||| | || |||||||| |||||||| || || || || ||||
Sbjct: 208 ttcaagcctttgaaatatgtggggattgaagtctggcaggtgaaggcaggctcggtttat 267
Query: 396 gacaacattctgatttgtgatgaccctgagtatgcaagaaaggttgttgaggaaacttgg 455
||||||||| | | |||||||| ||| ||||||| | |||||| |||||| || |||
Sbjct: 268 gacaacattttagtgtgtgatgatcctcagtatgctcgggaggttgctgaggagacatgg 327
Query: 456 ggtgcaaatagggaggctgaaaaggaagcttttga 490
|| ||| |||||| |||||||||||||||||
Sbjct: 328 ggaagaaacagggagatggaaaaggaagcttttga 362
>gb|CO361728.1|CO361728 NDL2_6_E01.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_E01_A029 5', mRNA sequence
Length = 761
Score = 141 bits (71), Expect = 7e-032
Identities = 224/275 (81%)
Strand = Plus / Plus
Query: 216 aatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggt 275
||||||||||||||||| |||||||| |||| |||||||||||| |||||||||||
Sbjct: 428 aatccagcatacaaggggccttggaaggcgaagaaaattaaaaatcccaactacaagggg 487
Query: 276 aaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtg 335
|| ||||| || |||||| | || |||||||| ||||| ||||||||||||||||||||
Sbjct: 488 aagtggaaaactccatgggttgacaatccagaatttgaagatgatccagatctttatgtc 547
Query: 336 ctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttc 395
| ||||||||||| ||| | || |||||||| |||||||| || || || || ||||
Sbjct: 548 ttcaagcctttgaaatatgtggggattgaagtctggcaggtgaaggcaggctcggtttat 607
Query: 396 gacaacattctgatttgtgatgaccctgagtatgcaagaaaggttgttgaggaaacttgg 455
||||||||| | | |||||||| ||| ||||||| | |||||| |||||| || |||
Sbjct: 608 gacaacattttagtgtgtgatgatcctcagtatgctcgggaggttgctgaggagacatgg 667
Query: 456 ggtgcaaatagggaggctgaaaaggaagcttttga 490
|| ||| |||||| |||||||||||||||||
Sbjct: 668 ggaagaaacagggagatggaaaaggaagcttttga 702
Score = 63.9 bits (32), Expect = 1e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 48 gccaaaaggcctaaggattgggatgacagagaatatattgaagatcctgatg 99
||||||| |||||| ||||||||||| ||||| |||||||| ||||||||||
Sbjct: 260 gccaaaaagcctaaagattgggatgatagagagtatattgatgatcctgatg 311
>gb|CO361739.1|CO361739 NDL2_6_F01.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_F01_A029 5', mRNA sequence
Length = 823
Score = 141 bits (71), Expect = 7e-032
Identities = 224/275 (81%)
Strand = Plus / Plus
Query: 216 aatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggt 275
||||||||||||||||| |||||||| |||| |||||||||||| |||||||||||
Sbjct: 428 aatccagcatacaaggggccttggaaggcgaagaaaattaaaaatcccaactacaagggg 487
Query: 276 aaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtg 335
|| ||||| || |||||| | || |||||||| ||||| ||||||||||||||||||||
Sbjct: 488 aagtggaaaactccatgggttgacaatccagaatttgaagatgatccagatctttatgtc 547
Query: 336 ctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttc 395
| ||||||||||| ||| | || |||||||| |||||||| || || || || ||||
Sbjct: 548 ttcaagcctttgaaatatgtggggattgaagtctggcaggtgaaggcaggctcggtttat 607
Query: 396 gacaacattctgatttgtgatgaccctgagtatgcaagaaaggttgttgaggaaacttgg 455
||||||||| | | |||||||| ||| ||||||| | |||||| |||||| || |||
Sbjct: 608 gacaacattttagtgtgtgatgatcctcagtatgctcgggaggttgctgaggagacatgg 667
Query: 456 ggtgcaaatagggaggctgaaaaggaagcttttga 490
|| ||| |||||| |||||||||||||||||
Sbjct: 668 ggaagaaacagggagatggaaaaggaagcttttga 702
Score = 63.9 bits (32), Expect = 1e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 48 gccaaaaggcctaaggattgggatgacagagaatatattgaagatcctgatg 99
||||||| |||||| ||||||||||| ||||| |||||||| ||||||||||
Sbjct: 260 gccaaaaagcctaaagattgggatgatagagagtatattgatgatcctgatg 311
>gb|CV031923.1|CV031923 RTNACL1_4_D03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_4_D03_A029 5', mRNA sequence
Length = 745
Score = 141 bits (71), Expect = 7e-032
Identities = 224/275 (81%)
Strand = Plus / Minus
Query: 216 aatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggt 275
||||||||||||||||| |||||||| |||| |||||||||||| |||||||||||
Sbjct: 647 aatccagcatacaaggggccttggaaggcgaagaaaattaaaaatcccaactacaagggc 588
Query: 276 aaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtg 335
|| ||||| || |||||| | || |||||||| ||||| ||||||||||||||||||||
Sbjct: 587 aagtggaaaactccatgggttgacaatccagaatttgaagatgatccagatctttatgtc 528
Query: 336 ctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttc 395
| ||||||||||| ||| | || |||||||| |||||||| || || || || ||||
Sbjct: 527 ttcaagcctttgaaatatgtggggattgaagtctggcaggtgaaggcaggctcggtttat 468
Query: 396 gacaacattctgatttgtgatgaccctgagtatgcaagaaaggttgttgaggaaacttgg 455
||||||||| | | |||||||| ||| ||||||| | |||||| |||||| || |||
Sbjct: 467 gacaacattttagtgtgtgatgatcctcagtatgctcgggaggttgctgaggagacatgg 408
Query: 456 ggtgcaaatagggaggctgaaaaggaagcttttga 490
|| ||| |||||| |||||||||||||||||
Sbjct: 407 ggaagaaacagggagatggaaaaggaagcttttga 373
>gb|DR098106.1|DR098106 STRR1_39_D06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_39_D06_A033 3', mRNA sequence
Length = 667
Score = 141 bits (71), Expect = 7e-032
Identities = 224/275 (81%)
Strand = Plus / Minus
Query: 216 aatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggt 275
||||||||||||||||| |||||||| |||| |||||||||||| |||||||||||
Sbjct: 279 aatccagcatacaaggggccttggaaggcgaagaaaattaaaaatcccaactacaagggg 220
Query: 276 aaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtg 335
|| ||||| || |||||| | || |||||||| ||||| ||||||||||||||||||||
Sbjct: 219 aagtggaaaactccatgggttgacaatccagaatttgaagatgatccagatctttatgtc 160
Query: 336 ctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttc 395
| ||||||||||| ||| | || |||||||| |||||||| || || || || ||||
Sbjct: 159 ttcaagcctttgaaatatgtggggattgaagtctggcaggtgaaggcaggctcggtttat 100
Query: 396 gacaacattctgatttgtgatgaccctgagtatgcaagaaaggttgttgaggaaacttgg 455
||||||||| | | |||||||| ||| ||||||| | |||||| |||||| || |||
Sbjct: 99 gacaacattttagtgtgtgatgatcctcagtatgctcgggaggttgctgaggagacatgg 40
Query: 456 ggtgcaaatagggaggctgaaaaggaagcttttga 490
|| ||| |||||| |||||||||||||||||
Sbjct: 39 ggaagaaacagggagatggaaaaggaagcttttga 5
Score = 63.9 bits (32), Expect = 1e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 48 gccaaaaggcctaaggattgggatgacagagaatatattgaagatcctgatg 99
||||||| |||||| ||||||||||| ||||| |||||||| ||||||||||
Sbjct: 447 gccaaaaagcctaaagattgggatgatagagagtatattgatgatcctgatg 396
>gb|CO198952.1|CO198952 GEO1_17_E10.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_17_E10_A029 5', mRNA sequence
Length = 800
Score = 133 bits (67), Expect = 2e-029
Identities = 178/215 (82%)
Strand = Plus / Plus
Query: 216 aatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggt 275
||||||||||||||||| |||||||| |||| |||||||||||| |||||||||||
Sbjct: 583 aatccagcatacaaggggccttggaaggcgaagaaaattaaaaatcccaactacaagggc 642
Query: 276 aaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtg 335
|| ||||| || |||||| | || |||||||| ||||| ||||||||||||||||||||
Sbjct: 643 aagtggaaaactccatgggttgacaatccagaatttgaagatgatccagatctttatgtc 702
Query: 336 ctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttc 395
| ||||||||||| ||| | || |||||||| |||||||| || || || || ||||
Sbjct: 703 ttcaagcctttgaaatatgtggggattgaagtctggcaggtgaaggcaggctcggtttat 762
Query: 396 gacaacattctgatttgtgatgaccctgagtatgc 430
||||||||| | | |||||||| ||| |||||||
Sbjct: 763 gacaacattttagtgtgtgatgatcctcagtatgc 797
Score = 63.9 bits (32), Expect = 1e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 48 gccaaaaggcctaaggattgggatgacagagaatatattgaagatcctgatg 99
||||||| |||||| ||||||||||| ||||| |||||||| ||||||||||
Sbjct: 415 gccaaaaagcctaaagattgggatgatagagagtatattgatgatcctgatg 466
>gb|CF395619.1|CF395619 RTDS2_12_C07.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_12_C07_A021 5', mRNA sequence
Length = 755
Score = 119 bits (60), Expect = 3e-025
Identities = 178/216 (82%), Gaps = 1/216 (0%)
Strand = Plus / Plus
Query: 216 aatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggt 275
||||||||||||||||| |||||||| |||| |||||||||||| |||||||||||
Sbjct: 535 aatccagcatacaaggggccttggaaggcgaagaaaattaaaaatcccaactacaagggc 594
Query: 276 aaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtg 335
|| ||||| || |||||| | || |||||||| ||||| ||||||||||||||||||||
Sbjct: 595 aagtggaaaactccatgggttgacaatccagaatttgaagatgatccagatctttatgtc 654
Query: 336 ctgaagcctttg-aagtatattggaattgaagtttggcaggtaaaagctggttcagtttt 394
| ||||||||| || ||| | || |||||||| |||||||| || || || || ||||
Sbjct: 655 ttcaagcctttgaaaatatgtggggattgaagtctggcaggtgaaggcaggctcggttta 714
Query: 395 cgacaacattctgatttgtgatgaccctgagtatgc 430
||||||||| | | |||||||| ||| |||||||
Sbjct: 715 tgacaacattttagtgtgtgatgatcctcagtatgc 750
Score = 63.9 bits (32), Expect = 1e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 48 gccaaaaggcctaaggattgggatgacagagaatatattgaagatcctgatg 99
||||||| |||||| ||||||||||| ||||| |||||||| ||||||||||
Sbjct: 367 gccaaaaagcctaaagattgggatgatagagagtatattgatgatcctgatg 418
>gb|CO175700.1|CO175700 NDL1_56_A03.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_56_A03_A029 5', mRNA sequence
Length = 758
Score = 109 bits (55), Expect = 2e-022
Identities = 114/134 (85%)
Strand = Plus / Plus
Query: 216 aatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggt 275
||||||||||||||||| |||||||| |||| ||||||||||| |||||||||||
Sbjct: 601 aatccagcatacaaggggccttggaaggcgaagaanattaaaaatcccaactacaagggg 660
Query: 276 aaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtg 335
|| ||||| || |||||| | || |||||||| ||||| ||||||||||||||||||||
Sbjct: 661 aagtggaaaactccatgggttgacaatccagaatttgaagatgatccagatctttatgtc 720
Query: 336 ctgaagcctttgaa 349
| |||||||||||
Sbjct: 721 ttcaagcctttgaa 734
Score = 63.9 bits (32), Expect = 1e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 48 gccaaaaggcctaaggattgggatgacagagaatatattgaagatcctgatg 99
||||||| |||||| ||||||||||| ||||| |||||||| ||||||||||
Sbjct: 433 gccaaaaagcctaaagattgggatgatagagagtatattgatgatcctgatg 484
>gb|DR098180.1|DR098180 STRR1_39_D06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_39_D06_A033 5', mRNA sequence
Length = 632
Score = 91.7 bits (46), Expect = 6e-017
Identities = 178/222 (80%)
Strand = Plus / Minus
Query: 269 caagggtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatct 328
|||||| || ||||| || |||||| | || |||||||| ||||| ||||||||||||||
Sbjct: 632 caaggggaagtggaaaactccatgggttgacaatccagaatttgaagatgatccagatct 573
Query: 329 ttatgtgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttc 388
|||||| | ||||||||||| ||| | || |||||||| |||||||| || || || ||
Sbjct: 572 ttatgtcttcaagcctttgaaatatgtggggattgaagtctggcaggtgaaggcaggctc 513
Query: 389 agttttcgacaacattctgatttgtgatgaccctgagtatgcaagaaaggttgttgagga 448
|||| ||||||||| | | |||||||| ||| ||||||| | |||||| ||||||
Sbjct: 512 ggtttatgacaacattttagtgtgtgatgatcctcagtatgctcgggaggttgctgagga 453
Query: 449 aacttggggtgcaaatagggaggctgaaaaggaagcttttga 490
|| ||||| ||| |||||| |||||||||||||||||
Sbjct: 452 gacatggggaagaaacagggagatggaaaaggaagcttttga 411
>gb|CO198875.1|CO198875 GEO1_17_E10.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_17_E10_A029 3', mRNA sequence
Length = 661
Score = 87.7 bits (44), Expect = 9e-016
Identities = 170/212 (80%)
Strand = Plus / Plus
Query: 279 tggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtgctg 338
||||| || |||||| | || |||||||| ||||| |||||||||||||||||||| |
Sbjct: 8 tggaaaactccatgggttgacaatccagaatttgaagatgatccagatctttatgtcttc 67
Query: 339 aagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttcgac 398
||||||||||| ||| | || |||||||| |||||||| || || || || |||| |||
Sbjct: 68 aagcctttgaaatatgtggggattgaagtctggcaggtgaaggcaggctcggtttatgac 127
Query: 399 aacattctgatttgtgatgaccctgagtatgcaagaaaggttgttgaggaaacttggggt 458
|||||| | | |||||||| ||| ||||||| | |||||| |||||| || |||||
Sbjct: 128 aacattttagtgtgtgatgatcctcagtatgctcgggaggttgctgaggagacatgggga 187
Query: 459 gcaaatagggaggctgaaaaggaagcttttga 490
||| |||||| |||||||||||||||||
Sbjct: 188 agaaacagggagatggaaaaggaagcttttga 219
>gb|CF671078.1|CF671078 RTCNT1_54_C08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_54_C08_A029 5', mRNA sequence
Length = 676
Score = 83.8 bits (42), Expect = 1e-014
Identities = 153/190 (80%)
Strand = Plus / Plus
Query: 301 atccagagtttgaggatgatccagatctttatgtgctgaagcctttgaagtatattggaa 360
||||||| ||||| |||||||||||||||||||| | ||||||||||| ||| | || |
Sbjct: 25 atccagaatttgaagatgatccagatctttatgtcttcaagcctttgaaatatgtgggga 84
Query: 361 ttgaagtttggcaggtaaaagctggttcagttttcgacaacattctgatttgtgatgacc 420
||||||| |||||||| || || || || |||| ||||||||| | | |||||||| |
Sbjct: 85 ttgaagtctggcaggtgaaggcaggctcggtttatgacaacattttagtgtgtgatgatc 144
Query: 421 ctgagtatgcaagaaaggttgttgaggaaacttggggtgcaaatagggaggctgaaaagg 480
|| ||||||| | |||||| |||||| || ||||| ||| |||||| |||||||
Sbjct: 145 ctcagtatgctcgggaggttgctgaggagacatggggaagaaacagggagatggaaaagg 204
Query: 481 aagcttttga 490
||||||||||
Sbjct: 205 aagcttttga 214
>gb|DR024916.1|DR024916 STRS1_68_H05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_68_H05_A034 3', mRNA sequence
Length = 652
Score = 77.8 bits (39), Expect = 9e-013
Identities = 153/191 (80%)
Strand = Plus / Plus
Query: 300 aatccagagtttgaggatgatccagatctttatgtgctgaagcctttgaagtatattgga 359
|||||||| ||||| |||||||||||||||||||| | ||||||||||| ||| | ||
Sbjct: 20 aatccagaatttgaagatgatccagatctttatgtcttcaagcctttgaaatatgtgggg 79
Query: 360 attgaagtttggcaggtaaaagctggttcagttttcgacaacattctgatttgtgatgac 419
|||||| | |||||||| || || || || |||| ||||||||| | | ||||||||
Sbjct: 80 attgaattctggcaggtgaaggcaggctcggtttatgacaacattttagtgtgtgatgat 139
Query: 420 cctgagtatgcaagaaaggttgttgaggaaacttggggtgcaaatagggaggctgaaaag 479
||| ||||||| | |||||| |||||| || ||||| ||| |||||| ||||||
Sbjct: 140 cctcagtatgctcgggaggttgctgaggagacatggggaagaaacagggagatggaaaag 199
Query: 480 gaagcttttga 490
|||||||||||
Sbjct: 200 gaagcttttga 210
>gb|AW290111.1|AW290111 NXNV010D03F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV010D03 5', mRNA sequence
Length = 346
Score = 73.8 bits (37), Expect = 1e-011
Identities = 100/121 (82%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||| ||| || ||||| ||||| | |||| |||||| ||||||||||||||||
Sbjct: 62 caaatccagaatataaaggaccctggaagcctaagaaaattaagaatcctaactacaagg 121
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
||||||||||| | ||| ||| || ||||| || || ||||||||||||| || ||||
Sbjct: 122 gtaaatggaaggctccaatgattgacaatcctgatttcaaggatgatccagagctctatg 181
Query: 334 t 334
|
Sbjct: 182 t 182
>gb|BE662302.1|BE662302 ST84/ST84D02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST84/ST84D02, mRNA sequence
Length = 421
Score = 73.8 bits (37), Expect = 1e-011
Identities = 100/121 (82%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||| ||| || ||||| ||||| | |||| |||||| ||||||||||||||||
Sbjct: 92 caaatccagaatataaaggaccctggaagcctaagaaaattaagaatcctaactacaagg 151
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
||||||||||| | ||| ||| || ||||| || || ||||||||||||| || ||||
Sbjct: 152 gtaaatggaaggctccaatgattgacaatcctgatttcaaggatgatccagagctctatg 211
Query: 334 t 334
|
Sbjct: 212 t 212
>gb|CD026738.1|CD026738 NXNV010D03 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV010D03 5' similar to Arabidopsis thaliana sequence
At1g56340 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 346
Score = 73.8 bits (37), Expect = 1e-011
Identities = 100/121 (82%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||| ||| || ||||| ||||| | |||| |||||| ||||||||||||||||
Sbjct: 62 caaatccagaatataaaggaccctggaagcctaagaaaattaagaatcctaactacaagg 121
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
||||||||||| | ||| ||| || ||||| || || ||||||||||||| || ||||
Sbjct: 122 gtaaatggaaggctccaatgattgacaatcctgatttcaaggatgatccagagctctatg 181
Query: 334 t 334
|
Sbjct: 182 t 182
>gb|CF475292.1|CF475292 RTWW2_13_H04.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_13_H04_A021 3', mRNA sequence
Length = 551
Score = 73.8 bits (37), Expect = 1e-011
Identities = 100/121 (82%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||| ||| || ||||| ||||| | |||| |||||| ||||||||||||||||
Sbjct: 269 caaatccagaatataaaggaccctggaagcctaagaaaattaagaatcctaactacaagg 328
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
||||||||||| | ||| ||| || ||||| || || ||||||||||||| || ||||
Sbjct: 329 gtaaatggaaggctccaatgattgacaatcctgatttcaaggatgatccagagctctatg 388
Query: 334 t 334
|
Sbjct: 389 t 389
>gb|CO366415.1|CO366415 RTK1_27_E11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_E11_A029 5', mRNA sequence
Length = 797
Score = 73.8 bits (37), Expect = 1e-011
Identities = 100/121 (82%)
Strand = Plus / Minus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||| ||| || ||||| ||||| | |||| |||||| ||||||||||||||||
Sbjct: 273 caaatccagaatataaaggaccctggaagcctaagaaaattaagaatcctaactacaagg 214
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
||||||||||| | ||| ||| || ||||| || || ||||||||||||| || ||||
Sbjct: 213 gtaaatggaaggctccaatgattgacaatcctgatttcaaggatgatccagagctctatg 154
Query: 334 t 334
|
Sbjct: 153 t 153
>gb|CV036192.1|CV036192 RTNACL1_57_H03.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_57_H03_A029 3', mRNA sequence
Length = 758
Score = 73.8 bits (37), Expect = 1e-011
Identities = 100/121 (82%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||| ||| || ||||| ||||| | |||| |||||| ||||||||||||||||
Sbjct: 476 caaatccagaatataaaggaccctggaagcctaagaaaattaagaatcctaactacaagg 535
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
||||||||||| | ||| ||| || ||||| || || ||||||||||||| || ||||
Sbjct: 536 gtaaatggaaggctccaatgattgacaatcctgatttcaaggatgatccagagctctatg 595
Query: 334 t 334
|
Sbjct: 596 t 596
>gb|CX647947.1|CX647947 COLD1_25_C01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_C01_A029 5', mRNA sequence
Length = 845
Score = 73.8 bits (37), Expect = 1e-011
Identities = 100/121 (82%)
Strand = Plus / Minus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||| ||| || ||||| ||||| | |||| |||||| ||||||||||||||||
Sbjct: 744 caaatccagaatataaaggaccctggaagcctaagaaaattaagaatcctaactacaagg 685
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
||||||||||| | ||| ||| || ||||| || || ||||||||||||| || ||||
Sbjct: 684 gtaaatggaaggctccaatgattgacaatcctgatttcaaggatgatccagagctctatg 625
Query: 334 t 334
|
Sbjct: 624 t 624
>gb|DR012575.1|DR012575 HEAT1_13_E12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_13_E12_A029 5', mRNA sequence
Length = 755
Score = 73.8 bits (37), Expect = 1e-011
Identities = 100/121 (82%)
Strand = Plus / Minus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||| ||| || ||||| ||||| | |||| |||||| ||||||||||||||||
Sbjct: 304 caaatccagaatataaaggaccctggaagcctaagaaaattaagaatcctaactacaagg 245
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
||||||||||| | ||| ||| || ||||| || || ||||||||||||| || ||||
Sbjct: 244 gtaaatggaaggctccaatgattgacaatcctgatttcaaggatgatccagagctctatg 185
Query: 334 t 334
|
Sbjct: 184 t 184
>gb|DR012617.1|DR012617 HEAT1_14_A11.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_14_A11_A029 3', mRNA sequence
Length = 791
Score = 73.8 bits (37), Expect = 1e-011
Identities = 100/121 (82%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||| ||| || ||||| ||||| | |||| |||||| ||||||||||||||||
Sbjct: 54 caaatccagaatataaaggaccctggaagcctaagaaaattaagaatcctaactacaagg 113
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
||||||||||| | ||| ||| || ||||| || || ||||||||||||| || ||||
Sbjct: 114 gtaaatggaaggctccaatgattgacaatcctgatttcaaggatgatccagagctctatg 173
Query: 334 t 334
|
Sbjct: 174 t 174
>gb|DR012699.1|DR012699 HEAT1_14_A11.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_14_A11_A029 5', mRNA sequence
Length = 817
Score = 73.8 bits (37), Expect = 1e-011
Identities = 100/121 (82%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||| ||| || ||||| ||||| | |||| |||||| ||||||||||||||||
Sbjct: 55 caaatccagaatataaaggaccctggaagcctaagaaaattaagaatcctaactacaagg 114
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
||||||||||| | ||| ||| || ||||| || || ||||||||||||| || ||||
Sbjct: 115 gtaaatggaaggctccaatgattgacaatcctgatttcaaggatgatccagagctctatg 174
Query: 334 t 334
|
Sbjct: 175 t 175
>gb|DR019100.1|DR019100 STRS1_27_G03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_27_G03_A034 5', mRNA sequence
Length = 867
Score = 73.8 bits (37), Expect = 1e-011
Identities = 100/121 (82%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||| ||| || ||||| ||||| | |||| |||||| ||||||||||||||||
Sbjct: 210 caaatccagaatataaaggaccctggaagcctaagaaaattaagaatcctaactacaagg 269
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
||||||||||| | ||| ||| || ||||| || || ||||||||||||| || ||||
Sbjct: 270 gtaaatggaaggctccaatgattgacaatcctgatttcaaggatgatccagagctctatg 329
Query: 334 t 334
|
Sbjct: 330 t 330
>gb|DR052273.1|DR052273 RTCA1_3_C03.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_3_C03_A029 5', mRNA sequence
Length = 860
Score = 73.8 bits (37), Expect = 1e-011
Identities = 100/121 (82%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||| ||| || ||||| ||||| | |||| |||||| ||||||||||||||||
Sbjct: 632 caaatccagaatataaaggaccctggaagcctaagaaaattaagaatcctaactacaagg 691
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
||||||||||| | ||| ||| || ||||| || || ||||||||||||| || ||||
Sbjct: 692 gtaaatggaaggctccaatgattgacaatcctgatttcaaggatgatccagagctctatg 751
Query: 334 t 334
|
Sbjct: 752 t 752
>gb|DR744660.1|DR744660 RTCU1_24_B03.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_B03_A029 3', mRNA sequence
Length = 816
Score = 73.8 bits (37), Expect = 1e-011
Identities = 100/121 (82%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||| ||| || ||||| ||||| | |||| |||||| ||||||||||||||||
Sbjct: 55 caaatccagaatataaaggaccctggaagcctaagaaaattaagaatcctaactacaagg 114
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
||||||||||| | ||| ||| || ||||| || || ||||||||||||| || ||||
Sbjct: 115 gtaaatggaaggctccaatgattgacaatcctgatttcaaggatgatccagagctctatg 174
Query: 334 t 334
|
Sbjct: 175 t 175
>gb|DR744725.1|DR744725 RTCU1_24_B03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_B03_A029 5', mRNA sequence
Length = 747
Score = 73.8 bits (37), Expect = 1e-011
Identities = 100/121 (82%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||| ||| || ||||| ||||| | |||| |||||| ||||||||||||||||
Sbjct: 462 caaatccagaatataaaggaccctggaagcctaagaaaattaagaatcctaactacaagg 521
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
||||||||||| | ||| ||| || ||||| || || ||||||||||||| || ||||
Sbjct: 522 gtaaatggaaggctccaatgattgacaatcctgatttcaaggatgatccagagctctatg 581
Query: 334 t 334
|
Sbjct: 582 t 582
>gb|AF283816.1|AF283816 Pinus taeda calreticulin mRNA, complete cds
Length = 1593
Score = 73.8 bits (37), Expect = 1e-011
Identities = 100/121 (82%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||| ||| || ||||| ||||| | |||| |||||| ||||||||||||||||
Sbjct: 832 caaatccagaatataaaggaccctggaagcctaagaaaattaagaatcctaactacaagg 891
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
||||||||||| | ||| ||| || ||||| || || ||||||||||||| || ||||
Sbjct: 892 gtaaatggaaggctccaatgattgacaatcctgatttcaaggatgatccagagctctatg 951
Query: 334 t 334
|
Sbjct: 952 t 952
>gb|AW289804.1|AW289804 NXNV006D09F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006D09 5', mRNA sequence
Length = 418
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||| ||| || ||||| ||||| | |||| |||||| ||||||||||||||||
Sbjct: 240 caaatccagaatataaaggaccctggaagcctaagaaaattaagaatcctaactacaagg 299
Query: 274 gtaaatggaag 284
|||||||||||
Sbjct: 300 gtaaatggaag 310
>gb|AL750674.1|AL750674 AL750674 RN Pinus pinaster cDNA clone RN06A11 similar to
CALRETICULIN, mRNA sequence
Length = 676
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||| ||| || ||||| ||||| | |||| |||||| ||||||||||||||||
Sbjct: 534 caaatccagaatataaaggaccgtggaatcctaagaaaattaagaatcctaactacaagg 593
Query: 274 gtaaatggaag 284
|||||||||||
Sbjct: 594 gtaaatggaag 604
>gb|AJ541803.1|AJ541803 AJ541803 Pinus pinaster differentiating xylem adult Pinus pinaster
cDNA clone PP001B06, mRNA sequence
Length = 702
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||| ||| || ||||| ||||| | |||| |||||| ||||||||||||||||
Sbjct: 63 caaatccagaatataaaggaccgtggaatcctaagaaaattaagaatcctaactacaagg 122
Query: 274 gtaaatggaag 284
|||||||||||
Sbjct: 123 gtaaatggaag 133
>gb|BF220810.1|BF220810 NXCI_154_B05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_154_B05 5' similar to Arabidopsis
thaliana sequence At1g56340 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 378
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||| ||| || ||||| ||||| | |||| |||||| ||||||||||||||||
Sbjct: 231 caaatccagaatataaaggaccctggaagcctaagaaaattaagaatcctaactacaagg 290
Query: 274 gtaaatggaag 284
|||||||||||
Sbjct: 291 gtaaatggaag 301
>gb|CD028390.1|CD028390 NXNV006D09 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006D09 5' similar to Arabidopsis thaliana sequence
At1g56340 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 418
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||| ||| || ||||| ||||| | |||| |||||| ||||||||||||||||
Sbjct: 240 caaatccagaatataaaggaccctggaagcctaagaaaattaagaatcctaactacaagg 299
Query: 274 gtaaatggaag 284
|||||||||||
Sbjct: 300 gtaaatggaag 310
>gb|DR091549.1|DR091549 RTAL1_22_H09.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_22_H09_A029 3', mRNA sequence
Length = 751
Score = 65.9 bits (33), Expect = 3e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 246 aagagaattaaaaatcctaactacaagggtaaatggaagaccccatggatcgataatcca 305
|||| |||||| ||||||||||||||||||||||||||| | ||| ||| || |||||
Sbjct: 22 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaatgattgacaatcct 81
Query: 306 gagtttgaggatgatccagatctttatgt 334
|| || ||||||||||||| || |||||
Sbjct: 82 gatttcaaggatgatccagagctctatgt 110
>gb|CV031851.1|CV031851 RTNACL1_4_D03.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_4_D03_A029 3', mRNA sequence
Length = 522
Score = 63.9 bits (32), Expect = 1e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 48 gccaaaaggcctaaggattgggatgacagagaatatattgaagatcctgatg 99
||||||| |||||| ||||||||||| ||||| |||||||| ||||||||||
Sbjct: 181 gccaaaaagcctaaagattgggatgatagagagtatattgatgatcctgatg 130
>gb|DR090199.1|DR090199 RTAL1_13_H05.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_13_H05_A029 3', mRNA sequence
Length = 373
Score = 63.9 bits (32), Expect = 1e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 48 gccaaaaggcctaaggattgggatgacagagaatatattgaagatcctgatg 99
||||||| |||||| ||||||||||| ||||| |||||||| ||||||||||
Sbjct: 106 gccaaaaagcctaaagattgggatgatagagagtatattgatgatcctgatg 55
>gb|AA556373.1|AA556373 228 Loblolly pine C Pinus taeda cDNA clone 1C10G, mRNA sequence
Length = 638
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 471 gctgaaaaggaagcttttgaag 492
||||||||||||||||||||||
Sbjct: 277 gctgaaaaggaagcttttgaag 298
>gb|BQ197445.1|BQ197445 NXLV114_D12_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV114_D12 5', mRNA sequence
Length = 489
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 471 gctgaaaaggaagcttttgaag 492
||||||||||||||||||||||
Sbjct: 75 gctgaaaaggaagcttttgaag 96
>gb|CD016626.1|CD016626 NXCI_040_C03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_040_C03 5', mRNA sequence
Length = 135
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 471 gctgaaaaggaagcttttgaag 492
||||||||||||||||||||||
Sbjct: 34 gctgaaaaggaagcttttgaag 55
>gb|CF393816.1|CF393816 RTDS2_1_A10.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_1_A10_A021 5', mRNA sequence
Length = 755
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 471 gctgaaaaggaagcttttgaag 492
||||||||||||||||||||||
Sbjct: 617 gctgaaaaggaagcttttgaag 638
>gb|CF396280.1|CF396280 RTDS2_21_H12.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_21_H12_A021 3', mRNA sequence
Length = 587
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 471 gctgaaaaggaagcttttgaag 492
||||||||||||||||||||||
Sbjct: 211 gctgaaaaggaagcttttgaag 232
>gb|CF396421.1|CF396421 RTDS2_21_H12.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_21_H12_A021 5', mRNA sequence
Length = 752
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 471 gctgaaaaggaagcttttgaag 492
||||||||||||||||||||||
Sbjct: 573 gctgaaaaggaagcttttgaag 594
>gb|CF668421.1|CF668421 RTCNT1_36_H10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_36_H10_A029 3', mRNA sequence
Length = 689
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 471 gctgaaaaggaagcttttgaag 492
||||||||||||||||||||||
Sbjct: 309 gctgaaaaggaagcttttgaag 330
>gb|CF668506.1|CF668506 RTCNT1_36_H10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_36_H10_A029 5', mRNA sequence
Length = 565
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 471 gctgaaaaggaagcttttgaag 492
||||||||||||||||||||||
Sbjct: 518 gctgaaaaggaagcttttgaag 539
>gb|CF670258.1|CF670258 RTCNT1_49_C06.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_49_C06_A029 3', mRNA sequence
Length = 701
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 471 gctgaaaaggaagcttttgaag 492
||||||||||||||||||||||
Sbjct: 307 gctgaaaaggaagcttttgaag 328
>gb|CF670333.1|CF670333 RTCNT1_49_C06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_49_C06_A029 5', mRNA sequence
Length = 709
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 471 gctgaaaaggaagcttttgaag 492
||||||||||||||||||||||
Sbjct: 464 gctgaaaaggaagcttttgaag 485
>gb|CR393186.1|CR393186 CR393186 RN Pinus pinaster cDNA clone RN53F09, mRNA sequence
Length = 588
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 471 gctgaaaaggaagcttttgaag 492
||||||||||||||||||||||
Sbjct: 381 gctgaaaaggaagcttttgaag 402
>gb|CO200857.1|CO200857 RTCNT2_2_B11.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_2_B11_A029 3', mRNA sequence
Length = 625
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 471 gctgaaaaggaagcttttgaag 492
||||||||||||||||||||||
Sbjct: 254 gctgaaaaggaagcttttgaag 275
>gb|CO364984.1|CO364984 RTK1_23_A06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_23_A06_A029 3', mRNA sequence
Length = 825
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 471 gctgaaaaggaagcttttgaag 492
||||||||||||||||||||||
Sbjct: 438 gctgaaaaggaagcttttgaag 459
>gb|CV033612.1|CV033612 RTNACL1_35_C08.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_35_C08_A029 5', mRNA sequence
Length = 573
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 471 gctgaaaaggaagcttttgaag 492
||||||||||||||||||||||
Sbjct: 362 gctgaaaaggaagcttttgaag 341
>gb|CV034792.1|CV034792 RTNACL1_11_D05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_11_D05_A029 5', mRNA sequence
Length = 646
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 471 gctgaaaaggaagcttttgaag 492
||||||||||||||||||||||
Sbjct: 365 gctgaaaaggaagcttttgaag 344
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 139,339
Number of Sequences: 355925
Number of extensions: 139339
Number of successful extensions: 41960
Number of sequences better than 0.5: 61
Number of HSP's better than 0.5 without gapping: 60
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 41774
Number of HSP's gapped (non-prelim): 154
length of query: 1094
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1075
effective length of database: 210,514,662
effective search space: 226303261650
effective search space used: 226303261650
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)