BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012873.2.2
(1520 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW754932.1|AW754932 PC08E08 Pine TriplEx pollen cone lib... 44 0.017
gb|BF221448.1|BF221448 NXCI_165_H04_F NXCI (Nsf Xylem Compr... 44 0.017
gb|BQ633915.1|BQ633915 NXRV062_D06_F NXRV (Nsf Xylem Root w... 44 0.017
gb|BQ697886.1|BQ697886 NXPV_062_B02_F NXPV (Nsf Xylem Plani... 44 0.017
gb|BQ698571.1|BQ698571 NXPV_071_E08_F NXPV (Nsf Xylem Plani... 44 0.017
gb|BQ698983.1|BQ698983 NXRV117_H05_F NXRV (Nsf Xylem Root w... 44 0.017
gb|CF399435.1|CF399435 RTDS3_28_F01.g1_A022 Drought-stresse... 44 0.017
gb|CO163978.1|CO163978 FLD1_45_B08.b1_A029 Root flooded Pin... 44 0.017
gb|CO167716.1|CO167716 FLD1_70_E10.g1_A029 Root flooded Pin... 44 0.017
gb|CO368195.1|CO368195 RTK1_39_E03.b1_A029 Roots minus pota... 44 0.017
gb|DR018972.1|DR018972 STRS1_27_B12.b1_A034 Shoot tip pitch... 44 0.017
gb|DR019054.1|DR019054 STRS1_27_B12.g1_A034 Shoot tip pitch... 44 0.017
gb|DR054929.1|DR054929 RTCA1_20_B04.g1_A029 Roots minus cal... 44 0.017
gb|DR094133.1|DR094133 STRR1_12_D11.g1_A033 Stem Response R... 44 0.017
gb|DR160425.1|DR160425 RTFE1_5_H08.g1_A029 Roots minus iron... 44 0.017
gb|DR684113.1|DR684113 EST1074190 Normalized pine embryo li... 44 0.017
gb|DR690997.1|DR690997 EST1081083 Normalized pine embryo li... 44 0.017
gb|DR692382.1|DR692382 EST1082470 Normalized pine embryo li... 44 0.017
gb|DT632346.1|DT632346 EST1147277 Normalized pine embryo li... 44 0.017
gb|DT637328.1|DT637328 EST1152259 Normalized pine embryo li... 44 0.017
gb|AY064169.1| Pinus taeda cinnamoyl-CoA reductase mRNA, co... 44 0.017
gb|AW981496.1|AW981496 PC13A10 Pine TriplEx pollen cone lib... 40 0.26
gb|BX678316.1|BX678316 BX678316 RN Pinus pinaster cDNA clon... 40 0.26
gb|DR060449.1|DR060449 RTNIT1_27_H06.g1_A029 Roots minus ni... 40 0.26
>gb|AW754932.1|AW754932 PC08E08 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC08E08, mRNA sequence
Length = 393
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 306 catcgcctcatggctggtgaagctgctgct 335
>gb|BF221448.1|BF221448 NXCI_165_H04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_165_H04 5', mRNA sequence
Length = 317
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 267 catcgcctcatggctggtgaagctgctgct 296
>gb|BQ633915.1|BQ633915 NXRV062_D06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV062_D06 5' similar to Arabidopsis thaliana
sequence At1g80820 cinnamoyl CoA reductase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 626
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 364 catcgcctcatggctggtgaagctgctgct 393
>gb|BQ697886.1|BQ697886 NXPV_062_B02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_062_B02 5' similar to Arabidopsis
thaliana sequence At1g15950 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 527
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 274 catcgcctcatggctggtgaagctgctgct 303
>gb|BQ698571.1|BQ698571 NXPV_071_E08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_071_E08 5' similar to Arabidopsis
thaliana sequence At1g15950 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 408
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 289 catcgcctcatggctggtgaagctgctgct 318
>gb|BQ698983.1|BQ698983 NXRV117_H05_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV117_H05 5' similar to Arabidopsis thaliana
sequence At1g15950 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 757
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 367 catcgcctcatggctggtgaagctgctgct 396
>gb|CF399435.1|CF399435 RTDS3_28_F01.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_28_F01_A022 5', mRNA sequence
Length = 596
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 205 catcgcctcatggctggtgaagctgctgct 234
>gb|CO163978.1|CO163978 FLD1_45_B08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_B08_A029 3', mRNA sequence
Length = 843
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 814 catcgcctcatggctggtgaagctgctgct 785
>gb|CO167716.1|CO167716 FLD1_70_E10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_E10_A029 5', mRNA sequence
Length = 745
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 288 catcgcctcatggctggtgaagctgctgct 317
>gb|CO368195.1|CO368195 RTK1_39_E03.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_39_E03_A029 3', mRNA sequence
Length = 826
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 548 catcgcctcatggctggtgaagctgctgct 519
>gb|DR018972.1|DR018972 STRS1_27_B12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_27_B12_A034 3', mRNA sequence
Length = 724
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 289 catcgcctcatggctggtgaagctgctgct 318
>gb|DR019054.1|DR019054 STRS1_27_B12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_27_B12_A034 5', mRNA sequence
Length = 711
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 271 catcgcctcatggctggtgaagctgctgct 300
>gb|DR054929.1|DR054929 RTCA1_20_B04.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_20_B04_A029 5', mRNA sequence
Length = 707
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 107 catcgcctcatggctggtgaagctgctgct 136
>gb|DR094133.1|DR094133 STRR1_12_D11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_D11_A033 5', mRNA sequence
Length = 832
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 249 catcgcctcatggctggtgaagctgctgct 278
>gb|DR160425.1|DR160425 RTFE1_5_H08.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_5_H08_A029 5', mRNA sequence
Length = 845
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 45 catcgcctcatggctggtgaagctgctgct 74
>gb|DR684113.1|DR684113 EST1074190 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAP06 3' end, mRNA sequence
Length = 774
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 306 catcgcctcatggctggtgaagctgctgct 335
>gb|DR690997.1|DR690997 EST1081083 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD262 3' end, mRNA sequence
Length = 665
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 191 catcgcctcatggctggtgaagctgctgct 220
>gb|DR692382.1|DR692382 EST1082470 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADL51 3' end, mRNA sequence
Length = 734
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 306 catcgcctcatggctggtgaagctgctgct 335
>gb|DT632346.1|DT632346 EST1147277 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFJ06 3' end, mRNA sequence
Length = 844
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 314 catcgcctcatggctggtgaagctgctgct 343
>gb|DT637328.1|DT637328 EST1152259 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH233 3' end, mRNA sequence
Length = 798
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 314 catcgcctcatggctggtgaagctgctgct 343
>gb|AY064169.1| Pinus taeda cinnamoyl-CoA reductase mRNA, complete cds
Length = 1359
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 329 catcgcctcgtggttggtgaagctgctgct 358
||||||||| ||| ||||||||||||||||
Sbjct: 305 catcgcctcatggctggtgaagctgctgct 334
>gb|AW981496.1|AW981496 PC13A10 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC13A10, mRNA sequence
Length = 630
Score = 40.1 bits (20), Expect = 0.26
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 331 tcgcctcgtggttggtgaagctgctgct 358
||||||| ||| ||||||||||||||||
Sbjct: 280 tcgcctcatggctggtgaagctgctgct 307
>gb|BX678316.1|BX678316 BX678316 RN Pinus pinaster cDNA clone RN69E08, mRNA sequence
Length = 575
Score = 40.1 bits (20), Expect = 0.26
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 333 gcctcgtggttggtgaagctgctgctcgagaagggatacactgt 376
||||| |||||||| |||| || ||||||||||| ||||||||
Sbjct: 36 gcctcctggttggtcaagcgtctactcgagaagggctacactgt 79
>gb|DR060449.1|DR060449 RTNIT1_27_H06.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_27_H06_A029 5', mRNA sequence
Length = 814
Score = 40.1 bits (20), Expect = 0.26
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 333 gcctcgtggttggtgaagctgctgctcgagaagggatacactgt 376
||||| |||||||| |||| || || |||||||||||||||||
Sbjct: 147 gcctcctggttggtcaagcgacttctagagaagggatacactgt 190
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 128,787
Number of Sequences: 355925
Number of extensions: 128787
Number of successful extensions: 31667
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31611
Number of HSP's gapped (non-prelim): 56
length of query: 1520
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1501
effective length of database: 210,514,662
effective search space: 315982507662
effective search space used: 315982507662
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)