BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012720.2.1
(1130 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF474089.1|CF474089 RTWW2_18_C08.g1_A021 Well-watered lo... 46 0.003
gb|BX679153.1|BX679153 BX679153 RS Pinus pinaster cDNA clon... 46 0.003
gb|DR117730.1|DR117730 RTMG1_8_G01.g1_A029 Roots minus magn... 46 0.003
gb|DR180137.1|DR180137 RTMNUT1_26_E06.g1_A029 Roots minus m... 46 0.003
gb|DR386197.1|DR386197 RTHG1_13_C02.g1_A029 Roots plus adde... 46 0.003
>gb|CF474089.1|CF474089 RTWW2_18_C08.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda
cDNA clone RTWW2_18_C08_A021 5', mRNA sequence
Length = 776
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1038 ggacttttcccaccaagctctaatgagacaggctt 1072
|||||||||||||||||||| ||||| || |||||
Sbjct: 591 ggacttttcccaccaagctccaatgatactggctt 557
>gb|BX679153.1|BX679153 BX679153 RS Pinus pinaster cDNA clone RS20F09, mRNA sequence
Length = 197
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1038 ggacttttcccaccaagctctaatgagacaggctt 1072
|||||||||||||||||||| ||||| || |||||
Sbjct: 85 ggacttttcccaccaagctccaatgatactggctt 51
>gb|DR117730.1|DR117730 RTMG1_8_G01.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_8_G01_A029 5', mRNA sequence
Length = 862
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1038 ggacttttcccaccaagctctaatgagacaggctt 1072
|||||||||||||||||||| ||||| || |||||
Sbjct: 136 ggacttttcccaccaagctccaatgatactggctt 102
>gb|DR180137.1|DR180137 RTMNUT1_26_E06.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_26_E06_A029 5', mRNA sequence
Length = 821
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1038 ggacttttcccaccaagctctaatgagacaggctt 1072
|||||||||||||||||||| ||||| || |||||
Sbjct: 791 ggacttttcccaccaagctccaatgatactggctt 757
>gb|DR386197.1|DR386197 RTHG1_13_C02.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_13_C02_A029 5', mRNA sequence
Length = 709
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1038 ggacttttcccaccaagctctaatgagacaggctt 1072
|||||||||||||||||||| ||||| || |||||
Sbjct: 377 ggacttttcccaccaagctccaatgatactggctt 343
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 139,688
Number of Sequences: 355925
Number of extensions: 139688
Number of successful extensions: 40053
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40045
Number of HSP's gapped (non-prelim): 8
length of query: 1130
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1111
effective length of database: 210,514,662
effective search space: 233881789482
effective search space used: 233881789482
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)