BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969966.2.1
(1029 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF518211.1|BF518211 NXSI_036_D07_F NXSI (Nsf Xylem Side ... 103 1e-020
gb|DN612931.1|DN612931 EST965981 Subtracted pine embryo lib... 42 0.044
gb|DR054271.1|DR054271 RTCA1_16_G04.b1_A029 Roots minus cal... 42 0.044
gb|DT628876.1|DT628876 EST1155446 Subtracted pine embryo li... 42 0.044
gb|DR111295.1|DR111295 RTS1_16_E08.g1_A029 Roots minus sulf... 40 0.18
>gb|BF518211.1|BF518211 NXSI_036_D07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_036_D07 5' similar to Arabidopsis thaliana
sequence At1g30330 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 323
Score = 103 bits (52), Expect = 1e-020
Identities = 124/148 (83%)
Strand = Plus / Plus
Query: 130 ggccacagactgtgatgccctcttctgttctttcgagtgacagcatgcacatcggactcc 189
|||||||| |||| |||||||| | || || |||||||| |||||||| || || ||||
Sbjct: 44 ggccacaggctgtaatgccctcattggtactctcgagtgatagcatgcatatagggctcc 103
Query: 190 ttgcagcagcagctcatgctgctgcaacaaacagccgcttcacaattttctataatccta 249
|||| || || |||||||||||||| ||||| || || || || |||||||||||||| |
Sbjct: 104 ttgctgcggctgctcatgctgctgctacaaatagtcgatttactattttctataatccaa 163
Query: 250 gggcaagtccaacagaatttgttatacc 277
||||||||||| | |||||||| |||||
Sbjct: 164 gggcaagtccatctgaatttgtcatacc 191
>gb|DN612931.1|DN612931 EST965981 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABL95, mRNA sequence
Length = 596
Score = 42.1 bits (21), Expect = 0.044
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 20 cactggctggagtgtgtttgtcagtgctaagagacttgttgctggagat 68
||||||||||||||| ||||| || |||| |||||||| || ||||||
Sbjct: 429 cactggctggagtgtctttgttagctctaaaagacttgtggcaggagat 381
>gb|DR054271.1|DR054271 RTCA1_16_G04.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_16_G04_A029 3', mRNA sequence
Length = 631
Score = 42.1 bits (21), Expect = 0.044
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 20 cactggctggagtgtgtttgtcagtgctaagagacttgttgctggagat 68
||||||||||||||| ||||| || |||| |||||||| || ||||||
Sbjct: 22 cactggctggagtgtctttgttagctctaaaagacttgtggcaggagat 70
>gb|DT628876.1|DT628876 EST1155446 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD303 5' end, mRNA sequence
Length = 596
Score = 42.1 bits (21), Expect = 0.044
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 20 cactggctggagtgtgtttgtcagtgctaagagacttgttgctggagat 68
||||||||||||||| ||||| || |||| |||||||| || ||||||
Sbjct: 168 cactggctggagtgtctttgttagctctaaaagacttgtggcaggagat 216
>gb|DR111295.1|DR111295 RTS1_16_E08.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_16_E08_A029 5', mRNA sequence
Length = 627
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 877 agcaagcgagccaacagcag 896
||||||||||||||||||||
Sbjct: 202 agcaagcgagccaacagcag 221
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 148,734
Number of Sequences: 355925
Number of extensions: 148734
Number of successful extensions: 43596
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43591
Number of HSP's gapped (non-prelim): 5
length of query: 1029
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1010
effective length of database: 210,514,662
effective search space: 212619808620
effective search space used: 212619808620
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)