BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969865.2.1
(675 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA556202.1|AA556202 57 Loblolly pine N Pinus taeda cDNA ... 129 2e-028
gb|DR016763.1|DR016763 STRS1_12_B09.b1_A034 Shoot tip pitch... 129 2e-028
gb|DR016841.1|DR016841 STRS1_12_B09.g1_A034 Shoot tip pitch... 129 2e-028
gb|DR020895.1|DR020895 STRS1_40_A11.b1_A034 Shoot tip pitch... 129 2e-028
gb|BX248841.1|BX248841 BX248841 Pinus pinaster differenciat... 123 1e-026
gb|AW982038.1|AW982038 PC23B03 Pine TriplEx pollen cone lib... 121 4e-026
gb|BX678603.1|BX678603 BX678603 RS Pinus pinaster cDNA clon... 121 4e-026
gb|CV035037.1|CV035037 RTNACL1_13_E11.b1_A029 Roots plus ad... 121 4e-026
gb|CV035118.1|CV035118 RTNACL1_13_E11.g1_A029 Roots plus ad... 121 4e-026
gb|BQ633828.1|BQ633828 NXRV061_D02_F NXRV (Nsf Xylem Root w... 105 2e-021
gb|CO169928.1|CO169928 NDL1_10_C06.g1_A029 Needles control ... 90 1e-016
gb|AW290664.1|AW290664 NXNV044G02F Nsf Xylem Normal wood Ve... 76 2e-012
gb|CD027328.1|CD027328 NXNV044G02 Nsf Xylem Normal wood Ver... 76 2e-012
gb|BF778981.1|BF778981 NXSI_091_F11_F NXSI (Nsf Xylem Side ... 62 3e-008
gb|DR743946.1|DR743946 RTCU1_19_E06.b1_A029 Roots plus adde... 50 1e-004
gb|DR744016.1|DR744016 RTCU1_19_E06.g1_A029 Roots plus adde... 50 1e-004
>gb|AA556202.1|AA556202 57 Loblolly pine N Pinus taeda cDNA clone 2N8E, mRNA sequence
Length = 719
Score = 129 bits (65), Expect = 2e-028
Identities = 218/269 (81%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||| ||||| |||| || |||||||| || || |||||||||||||| || || |||
Sbjct: 124 gaggaggaggaattcaatactggtcctctttctgttctcatgatgagcgtgaaaaacaat 183
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||||| ||||| ||| | |||||||| ||| | ||||| || || |||| ||
Sbjct: 184 acacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcattt 243
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
||| ||||||||||||||||| | ||||| || | || |||||||| ||||| || |||
Sbjct: 244 gataggcactgcaacatggttttggagaatgtcaaagaaatgtggacagaggttccaaag 303
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| ||||||||||||||||| |||| || || |||||||| |||||||| ||||| |||
Sbjct: 304 acaggtaaaggcaagaagaaagctcagcctgtcaacaaggataggttcatcagcaaaatg 363
Query: 357 ttcctccgtggggattcggtcatcattgt 385
|| || ||||| || || ||||| |||||
Sbjct: 364 tttcttcgtggagactctgtcattattgt 392
>gb|DR016763.1|DR016763 STRS1_12_B09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_12_B09_A034 3', mRNA sequence
Length = 853
Score = 129 bits (65), Expect = 2e-028
Identities = 218/269 (81%)
Strand = Plus / Minus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||| ||||| |||| || |||||||| || || |||||||||||||| || || |||
Sbjct: 458 gaggaggaggaattcaatactggtcctctttctgttctcatgatgagcgtgaaaaacaat 399
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||||| ||||| ||| | |||||||| ||| | ||||| || || |||| ||
Sbjct: 398 acacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcattt 339
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
||| ||||||||||||||||| | ||||| || | || |||||||| ||||| || |||
Sbjct: 338 gataggcactgcaacatggttttggagaatgtcaaagaaatgtggacagaggttccaaag 279
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| ||||||||||||||||| |||| || || |||||||| |||||||| ||||| |||
Sbjct: 278 acaggtaaaggcaagaagaaagctcagcctgttaacaaggataggttcatcagcaaaatg 219
Query: 357 ttcctccgtggggattcggtcatcattgt 385
|| || ||||| || || ||||| |||||
Sbjct: 218 tttcttcgtggagactctgtcattattgt 190
>gb|DR016841.1|DR016841 STRS1_12_B09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_12_B09_A034 5', mRNA sequence
Length = 913
Score = 129 bits (65), Expect = 2e-028
Identities = 218/269 (81%)
Strand = Plus / Minus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||| ||||| |||| || |||||||| || || |||||||||||||| || || |||
Sbjct: 547 gaggaggaggaattcaatactggtcctctttctgttctcatgatgagcgtgaaaaacaat 488
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||||| ||||| ||| | |||||||| ||| | ||||| || || |||| ||
Sbjct: 487 acacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcattt 428
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
||| ||||||||||||||||| | ||||| || | || |||||||| ||||| || |||
Sbjct: 427 gataggcactgcaacatggttttggagaatgtcaaagaaatgtggacagaggttccaaag 368
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| ||||||||||||||||| |||| || || |||||||| |||||||| ||||| |||
Sbjct: 367 acaggtaaaggcaagaagaaagctcagcctgttaacaaggataggttcatcagcaaaatg 308
Query: 357 ttcctccgtggggattcggtcatcattgt 385
|| || ||||| || || ||||| |||||
Sbjct: 307 tttcttcgtggagactctgtcattattgt 279
>gb|DR020895.1|DR020895 STRS1_40_A11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_40_A11_A034 3', mRNA sequence
Length = 811
Score = 129 bits (65), Expect = 2e-028
Identities = 218/269 (81%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||| ||||| |||| || |||||||| || || |||||||||||||| || || |||
Sbjct: 212 gaggaggaggaattcaatactggtcctctttctgttctcatgatgagcgtgaaaaacaat 271
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||||| ||||| ||| | |||||||| ||| | ||||| || || |||| ||
Sbjct: 272 acacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcattt 331
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
||| ||||||||||||||||| | ||||| || | || |||||||| ||||| || |||
Sbjct: 332 gataggcactgcaacatggttttggagaatgtcaaagaaatgtggacagaggttccaaag 391
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| ||||||||||||||||| |||| || || |||||||| |||||||| ||||| |||
Sbjct: 392 acaggtaaaggcaagaagaaagctcagcctgttaacaaggataggttcatcagcaaaatg 451
Query: 357 ttcctccgtggggattcggtcatcattgt 385
|| || ||||| || || ||||| |||||
Sbjct: 452 tttcttcgtggagactctgtcattattgt 480
>gb|BX248841.1|BX248841 BX248841 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP001F10, mRNA sequence
Length = 665
Score = 123 bits (62), Expect = 1e-026
Identities = 217/269 (80%)
Strand = Plus / Minus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||| ||||| |||| || |||||||| || || ||||||||||| || || || |||
Sbjct: 626 gaggaggaggaattcaatactggtcctctntctgttctcatgatgagtgtgaaaaacaat 567
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||||| ||||| ||| | |||||||| ||| | ||||| || || |||| ||
Sbjct: 566 acacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcattt 507
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
||| ||||||||||||||||| | ||||| || | || |||||||| ||||| || |||
Sbjct: 506 gataggcactgcaacatggttttggagaatgtcaaagaaatgtggacggaggttccaaag 447
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| ||||||||||||||||| |||| || || |||||||| |||||||| ||||| |||
Sbjct: 446 acaggtaaaggcaagaagaaagctcagcctgtcaacaaggataggttcatcagcaaaatg 387
Query: 357 ttcctccgtggggattcggtcatcattgt 385
|| || ||||| || || ||||| |||||
Sbjct: 386 tttcttcgtggagactctgtcattattgt 358
>gb|AW982038.1|AW982038 PC23B03 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC23B03, mRNA sequence
Length = 589
Score = 121 bits (61), Expect = 4e-026
Identities = 217/269 (80%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||| ||||| |||| || |||||||| || || | |||||||||||| || || |||
Sbjct: 148 gaggaggaggaattcaatactggtcctctttctgttcccatgatgagcgtgaaaaacaat 207
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||||| ||||| ||| | |||||||| ||| | ||||| || || |||| ||
Sbjct: 208 acacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcattt 267
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
||| ||||||||||||||||| | ||||| || | || |||||||| ||||| || |||
Sbjct: 268 gataggcactgcaacatggttttggagaatgtcaaagaaatgtggacagaggttccaaag 327
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| ||||||||||||||||| |||| || || |||||||| |||||||| ||||| |||
Sbjct: 328 acaggtaaaggcaagaagaaagctcagcctgtcaacaaggataggttcatcagcaaaatg 387
Query: 357 ttcctccgtggggattcggtcatcattgt 385
|| || ||||| || || ||||| |||||
Sbjct: 388 tttcttcgtggagactctgtcattattgt 416
>gb|BX678603.1|BX678603 BX678603 RS Pinus pinaster cDNA clone RS11G12, mRNA sequence
Length = 608
Score = 121 bits (61), Expect = 4e-026
Identities = 217/269 (80%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||| ||||| |||| || |||||||| || || ||||||||||| || || || |||
Sbjct: 140 gaggaggaggaattcaatactggtcctctttctgttctcatgatgagtgtgaaaaacaat 199
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||||| ||||| ||| | |||||||| ||| | ||||| || || |||| ||
Sbjct: 200 acacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcattt 259
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
||| ||||||||||||||||| | ||||| || | || |||||||| ||||| || |||
Sbjct: 260 gataggcactgcaacatggttttggagaatgtcaaagaaatgtggacggaggttccaaag 319
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| ||||||||||||||||| |||| || || |||||||| |||||||| ||||| |||
Sbjct: 320 acaggtaaaggcaagaagaaagctcagcctgtcaacaaggataggttcatcagcaaaatg 379
Query: 357 ttcctccgtggggattcggtcatcattgt 385
|| || ||||| || || ||||| |||||
Sbjct: 380 tttcttcgtggagactctgtcattattgt 408
>gb|CV035037.1|CV035037 RTNACL1_13_E11.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_E11_A029 3', mRNA sequence
Length = 723
Score = 121 bits (61), Expect = 4e-026
Identities = 217/269 (80%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||| ||||| |||| || |||||||| || || ||||||||||| || || || |||
Sbjct: 123 gaggaggaggaattcaatactggtcctctttctgttctcatgatgagtgtgaaaaacaat 182
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||||| ||||| ||| | |||||||| ||| | ||||| || || |||| ||
Sbjct: 183 acacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcattt 242
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
||| ||||||||||||||||| | ||||| || | || |||||||| ||||| || |||
Sbjct: 243 gataggcactgcaacatggttttggagaatgtcaaagaaatgtggacagaggttccaaag 302
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| ||||||||||||||||| |||| || || |||||||| |||||||| ||||| |||
Sbjct: 303 acaggtaaaggcaagaagaaagctcagcctgtcaacaaggataggttcatcagcaaaatg 362
Query: 357 ttcctccgtggggattcggtcatcattgt 385
|| || ||||| || || ||||| |||||
Sbjct: 363 tttcttcgtggagactctgtcattattgt 391
>gb|CV035118.1|CV035118 RTNACL1_13_E11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_E11_A029 5', mRNA sequence
Length = 712
Score = 121 bits (61), Expect = 4e-026
Identities = 217/269 (80%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||| ||||| |||| || |||||||| || || ||||||||||| || || || |||
Sbjct: 92 gaggaggaggaattcaatactggtcctctttctgttctcatgatgagtgtgaaaaacaat 151
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||||| ||||| ||| | |||||||| ||| | ||||| || || |||| ||
Sbjct: 152 acacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcattt 211
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
||| ||||||||||||||||| | ||||| || | || |||||||| ||||| || |||
Sbjct: 212 gataggcactgcaacatggttttggagaatgtcaaagaaatgtggacagaggttccaaag 271
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| ||||||||||||||||| |||| || || |||||||| |||||||| ||||| |||
Sbjct: 272 acaggtaaaggcaagaagaaagctcagcctgtcaacaaggataggttcatcagcaaaatg 331
Query: 357 ttcctccgtggggattcggtcatcattgt 385
|| || ||||| || || ||||| |||||
Sbjct: 332 tttcttcgtggagactctgtcattattgt 360
>gb|BQ633828.1|BQ633828 NXRV061_D02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV061_D02 5' similar to Arabidopsis thaliana
sequence At3g62840 small nuclear ribonucleoprotein-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 548
Score = 105 bits (53), Expect = 2e-021
Identities = 167/205 (81%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||| ||||| |||| || |||||||| || || |||||||||||||| || || |||
Sbjct: 190 gaggaggaggaattcaatactggtcctctttctgttctcatgatgagcgtgaaaaacaat 249
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||||| ||||| ||| | |||||||| ||| | ||||| || || |||| ||
Sbjct: 250 acacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcattt 309
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
||| ||||||||||||||||| | ||||| || | || |||||||| ||||| || |||
Sbjct: 310 gataggcactgcaacatggttttggagaatgtcaaagaaatgtggacagaggttccaaag 369
Query: 297 accggtaaaggcaagaagaaggctc 321
|| ||||||||||||||||| ||||
Sbjct: 370 acaggtaaaggcaagaagaaagctc 394
>gb|CO169928.1|CO169928 NDL1_10_C06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_10_C06_A029 5', mRNA sequence
Length = 642
Score = 89.7 bits (45), Expect = 1e-016
Identities = 217/273 (79%), Gaps = 4/273 (1%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||| ||||| |||| || |||||||| || || |||||||||||||| || || |||
Sbjct: 194 gaggaggaggaattcaatactggtcctctttctgttctcatgatgagcgtgaaaaacaat 253
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||||| ||||| ||| | |||||||| ||| | ||||| || || |||| ||
Sbjct: 254 acacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcattt 313
Query: 237 gatcggcactgcaacatggttcttgagaacgtta---gggagatgtggaccgagg-tacc 292
||| ||||||||||||||||| | ||||| || | | |||||||| |||| | ||
Sbjct: 314 gataggcactgcaacatggttttggagaatgtcaaangaannatgtggacagaggttccc 373
Query: 293 gaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaa 352
||||| ||||||||||||||||| |||| || || |||||||| |||||||| |||||
Sbjct: 374 aaagacaggtaaaggcaagaagaaagctcagcctgttaacaaggataggttcatcagcaa 433
Query: 353 gatgttcctccgtggggattcggtcatcattgt 385
||||| || ||||| || || ||||| |||||
Sbjct: 434 aatgtttcttcgtggagactctgtcattattgt 466
>gb|AW290664.1|AW290664 NXNV044G02F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044G02 5', mRNA sequence
Length = 380
Score = 75.8 bits (38), Expect = 2e-012
Identities = 92/110 (83%)
Strand = Plus / Plus
Query: 276 atgtggaccgaggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaag 335
|||||||| ||||| || ||||| ||||||||||||||||| |||| || || ||||||
Sbjct: 27 atgtggacagaggttccaaagacaggtaaaggcaagaagaaagctcagcctgttaacaag 86
Query: 336 gacaggttcataagcaagatgttcctccgtggggattcggtcatcattgt 385
|| |||||||| ||||| ||||| || ||||| || || ||||| |||||
Sbjct: 87 gataggttcatcagcaaaatgtttcttcgtggagactctgtcattattgt 136
>gb|CD027328.1|CD027328 NXNV044G02 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044G02 5' similar to Arabidopsis thaliana sequence
At3g62840 small nuclear ribonucleoprotein-like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 380
Score = 75.8 bits (38), Expect = 2e-012
Identities = 92/110 (83%)
Strand = Plus / Plus
Query: 276 atgtggaccgaggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaag 335
|||||||| ||||| || ||||| ||||||||||||||||| |||| || || ||||||
Sbjct: 27 atgtggacagaggttccaaagacaggtaaaggcaagaagaaagctcagcctgttaacaag 86
Query: 336 gacaggttcataagcaagatgttcctccgtggggattcggtcatcattgt 385
|| |||||||| ||||| ||||| || ||||| || || ||||| |||||
Sbjct: 87 gataggttcatcagcaaaatgtttcttcgtggagactctgtcattattgt 136
>gb|BF778981.1|BF778981 NXSI_091_F11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_091_F11 5' similar to Arabidopsis thaliana
sequence At3g62840 small nuclear ribonucleoprotein-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 361
Score = 61.9 bits (31), Expect = 3e-008
Identities = 113/141 (80%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||| ||||| |||| || |||||||| || || |||||||||||||| || || |||
Sbjct: 146 gaggaggaggaattcaatactggtcctctttctgttctcatgatgagcgtgaaaaacaat 205
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||||| ||||| ||| | |||||||| ||| | ||||| || || |||| ||
Sbjct: 206 acacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcattt 265
Query: 237 gatcggcactgcaacatggtt 257
||| |||||||||||||||
Sbjct: 266 gatanncactgcaacatggtt 286
>gb|DR743946.1|DR743946 RTCU1_19_E06.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_E06_A029 3', mRNA sequence
Length = 571
Score = 50.1 bits (25), Expect = 1e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 247 gcaacatggttcttgagaacgttagggagatgtggac 283
|||||||||| ||||||||||| | ||||||||||||
Sbjct: 211 gcaacatggtgcttgagaacgtgaaggagatgtggac 247
>gb|DR744016.1|DR744016 RTCU1_19_E06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_E06_A029 5', mRNA sequence
Length = 536
Score = 50.1 bits (25), Expect = 1e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 247 gcaacatggttcttgagaacgttagggagatgtggac 283
|||||||||| ||||||||||| | ||||||||||||
Sbjct: 179 gcaacatggtgcttgagaacgtgaaggagatgtggac 215
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 69,683
Number of Sequences: 355925
Number of extensions: 69683
Number of successful extensions: 22368
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22351
Number of HSP's gapped (non-prelim): 17
length of query: 675
length of database: 217,277,237
effective HSP length: 19
effective length of query: 656
effective length of database: 210,514,662
effective search space: 138097618272
effective search space used: 138097618272
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)