BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950292.2.1
(1205 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF186414.1|BF186414 NXCI_137_B04_F NXCI (Nsf Xylem Compr... 109 3e-022
gb|BQ701196.1|BQ701196 NXSI_023_F09_F NXSI (Nsf Xylem Side ... 109 3e-022
gb|CF389503.1|CF389503 RTDR2_7_D08.g1_A021 Loblolly pine ro... 109 3e-022
gb|CO365906.1|CO365906 RTK1_20_A05.b1_A029 Roots minus pota... 109 3e-022
gb|DR050755.1|DR050755 RTBOR1_25_B02.g1_A029 Roots plus add... 109 3e-022
gb|DR080303.1|DR080303 RTFEPL1_21_F06.g1_A029 Roots plus ad... 109 3e-022
gb|DR163034.1|DR163034 RTFE1_24_D08.b1_A029 Roots minus iro... 109 3e-022
gb|DR681770.1|DR681770 EST1071845 Normalized pine embryo li... 109 3e-022
gb|DR686141.1|DR686141 EST1076219 Normalized pine embryo li... 109 3e-022
gb|DR686265.1|DR686265 EST1076343 Normalized pine embryo li... 109 3e-022
gb|DT630928.1|DT630928 EST1145859 Normalized pine embryo li... 109 3e-022
gb|AW010437.1|AW010437 ST06G08 Pine TriplEx shoot tip libra... 101 7e-020
gb|DR685890.1|DR685890 EST1075967 Normalized pine embryo li... 88 1e-015
gb|CD021703.1|CD021703 NXNV_155_G08_F Nsf Xylem Normal wood... 82 6e-014
gb|CO365983.1|CO365983 RTK1_20_A05.g1_A029 Roots minus pota... 68 9e-010
gb|BE662528.1|BE662528 ST87/ST87D04 Pine TriplEx shoot tip ... 52 5e-005
gb|DR050672.1|DR050672 RTBOR1_25_B02.b1_A029 Roots plus add... 52 5e-005
gb|DR080231.1|DR080231 RTFEPL1_21_F06.b1_A029 Roots plus ad... 52 5e-005
gb|BQ634952.1|BQ634952 NXRV075_B05_F NXRV (Nsf Xylem Root w... 46 0.003
gb|DR385386.1|DR385386 RTHG1_8_G12.b1_A029 Roots plus added... 46 0.003
gb|CF389389.1|CF389389 RTDR2_7_D08.b1_A021 Loblolly pine ro... 44 0.013
gb|DR161148.1|DR161148 RTFE1_10_D03.b1_A029 Roots minus iro... 44 0.013
gb|DR161231.1|DR161231 RTFE1_10_D03.g1_A029 Roots minus iro... 44 0.013
gb|BQ697214.1|BQ697214 NXPV_050_H06_F NXPV (Nsf Xylem Plani... 40 0.21
>gb|BF186414.1|BF186414 NXCI_137_B04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_137_B04 5' similar to Arabidopsis
thaliana sequence At2g15250 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 386
Score = 109 bits (55), Expect = 3e-022
Identities = 118/139 (84%)
Strand = Plus / Plus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtactt 236
|||||||||| || | ||||||||||||||| |||||||||||| |||| || || || |
Sbjct: 75 tcaagtggcagcagatggatattgaatacaccttttggcaaatgcttcacctttgcacgt 134
Query: 237 caccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggccc 296
| || ||||| || ||||| || ||||| || ||||||||||||||||| |||||||| |
Sbjct: 135 cccccaaagtggtttatcaacataccaagtaccacaagcaaacaaagaatcagtgggcac 194
Query: 297 gtgatgatcctgcatttgt 315
| |||||||| ||||||||
Sbjct: 195 gggatgatccagcatttgt 213
>gb|BQ701196.1|BQ701196 NXSI_023_F09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_023_F09 5' similar to Arabidopsis thaliana
sequence At2g15250 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 493
Score = 109 bits (55), Expect = 3e-022
Identities = 118/139 (84%)
Strand = Plus / Plus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtactt 236
|||||||||| || | ||||||||||||||| |||||||||||| |||| || || || |
Sbjct: 134 tcaagtggcagcagatggatattgaatacaccttttggcaaatgcttcacctttgcacgt 193
Query: 237 caccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggccc 296
| || ||||| || ||||| || ||||| || ||||||||||||||||| |||||||| |
Sbjct: 194 cccccaaagtggtttatcaacataccaagtaccacaagcaaacaaagaatcagtgggcac 253
Query: 297 gtgatgatcctgcatttgt 315
| |||||||| ||||||||
Sbjct: 254 gggatgatccagcatttgt 272
>gb|CF389503.1|CF389503 RTDR2_7_D08.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_7_D08_A021 5', mRNA
sequence
Length = 701
Score = 109 bits (55), Expect = 3e-022
Identities = 118/139 (84%)
Strand = Plus / Plus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtactt 236
|||||||||| || | ||||||||||||||| |||||||||||| |||| || || || |
Sbjct: 145 tcaagtggcagcagatggatattgaatacaccttttggcaaatgcttcacctttgcacgt 204
Query: 237 caccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggccc 296
| || ||||| || ||||| || ||||| || ||||||||||||||||| |||||||| |
Sbjct: 205 cccccaaagtggtttatcaacataccaagtaccacaagcaaacaaagaatcagtgggcac 264
Query: 297 gtgatgatcctgcatttgt 315
| |||||||| ||||||||
Sbjct: 265 gggatgatccagcatttgt 283
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| |||||||| ||||||| ||||| ||||| ||||||||||| || ||||| |||
Sbjct: 471 aacagtcatgttgtggagcaacatgtggaatggctttatgcatttgatgtacattgcaac 530
Query: 557 tc 558
||
Sbjct: 531 tc 532
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 686 tacctgaactttctaggatatgatgt 711
||||||||||||||||| ||||||||
Sbjct: 660 tacctgaactttctaggctatgatgt 685
>gb|CO365906.1|CO365906 RTK1_20_A05.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_20_A05_A029 3', mRNA sequence
Length = 841
Score = 109 bits (55), Expect = 3e-022
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtactt 236
|||||||||| || | ||||||||||||||| |||||||||||| |||| || || || |
Sbjct: 652 tcaagtggcagcagatggatattgaatacaccttttggcaaatgcttcacctttgcacgt 593
Query: 237 caccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggccc 296
| || ||||| || ||||| || ||||| || ||||||||||||||||| |||||||| |
Sbjct: 592 cccccaaagtggtttatcaacataccaagtaccacaagcaaacaaagaatcagtgggcac 533
Query: 297 gtgatgatcctgcatttgt 315
| |||||||| ||||||||
Sbjct: 532 gggatgatccagcatttgt 514
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| |||||||| ||||||| ||||| ||||| ||||||||||| || ||||| |||
Sbjct: 326 aacagtcatgttgtggagcaacatgtggaatggctttatgcatttgatgtacattgcaac 267
Query: 557 tc 558
||
Sbjct: 266 tc 265
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 686 tacctgaactttctaggatatgatgt 711
||||||||||||||||| ||||||||
Sbjct: 137 tacctgaactttctaggctatgatgt 112
>gb|DR050755.1|DR050755 RTBOR1_25_B02.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_B02_A029 5', mRNA sequence
Length = 935
Score = 109 bits (55), Expect = 3e-022
Identities = 118/139 (84%)
Strand = Plus / Plus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtactt 236
|||||||||| || | ||||||||||||||| |||||||||||| |||| || || || |
Sbjct: 114 tcaagtggcagcagatggatattgaatacaccttttggcaaatgcttcacctttgcacgt 173
Query: 237 caccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggccc 296
| || ||||| || ||||| || ||||| || ||||||||||||||||| |||||||| |
Sbjct: 174 cccccaaagtggtttatcaacataccaagtaccacaagcaaacaaagaatcagtgggcac 233
Query: 297 gtgatgatcctgcatttgt 315
| |||||||| ||||||||
Sbjct: 234 gggatgatccagcatttgt 252
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| |||||||| ||||||| ||||| ||||| ||||||||||| || ||||| |||
Sbjct: 440 aacagtcatgttgtggagcaacatgtggaatggctttatgcatttgatgtacattgcaac 499
Query: 557 tc 558
||
Sbjct: 500 tc 501
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 686 tacctgaactttctaggatatgatgt 711
||||||||||||||||| ||||||||
Sbjct: 629 tacctgaactttctaggctatgatgt 654
>gb|DR080303.1|DR080303 RTFEPL1_21_F06.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_21_F06_A029 5', mRNA sequence
Length = 660
Score = 109 bits (55), Expect = 3e-022
Identities = 118/139 (84%)
Strand = Plus / Plus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtactt 236
|||||||||| || | ||||||||||||||| |||||||||||| |||| || || || |
Sbjct: 221 tcaagtggcagcagatggatattgaatacaccttttggcaaatgcttcacctttgcacgt 280
Query: 237 caccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggccc 296
| || ||||| || ||||| || ||||| || ||||||||||||||||| |||||||| |
Sbjct: 281 cccccaaagtggtttatcaacataccaagtaccacaagcaaacaaagaatcagtgggcac 340
Query: 297 gtgatgatcctgcatttgt 315
| |||||||| ||||||||
Sbjct: 341 gggatgatccagcatttgt 359
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| |||||||| ||||||| ||||| ||||| ||||||||||| || ||||| |||
Sbjct: 547 aacagtcatgttgtggagcaacatgtggaatggctttatgcatttgatgtacattgcaac 606
Query: 557 tc 558
||
Sbjct: 607 tc 608
>gb|DR163034.1|DR163034 RTFE1_24_D08.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_24_D08_A029 3', mRNA sequence
Length = 361
Score = 109 bits (55), Expect = 3e-022
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtactt 236
|||||||||| || | ||||||||||||||| |||||||||||| |||| || || || |
Sbjct: 292 tcaagtggcagcagatggatattgaatacaccttttggcaaatgcttcacctttgcacgt 233
Query: 237 caccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggccc 296
| || ||||| || ||||| || ||||| || ||||||||||||||||| |||||||| |
Sbjct: 232 cccccaaagtggtttatcaacataccaagtaccacaagcaaacaaagaatcagtgggcac 173
Query: 297 gtgatgatcctgcatttgt 315
| |||||||| ||||||||
Sbjct: 172 gggatgatccagcatttgt 154
>gb|DR681770.1|DR681770 EST1071845 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA134 3' end, mRNA sequence
Length = 698
Score = 109 bits (55), Expect = 3e-022
Identities = 118/139 (84%)
Strand = Plus / Plus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtactt 236
|||||||||| || | ||||||||||||||| |||||||||||| |||| || || || |
Sbjct: 249 tcaagtggcagcagatggatattgaatacaccttttggcaaatgcttcacctttgcacgt 308
Query: 237 caccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggccc 296
| || ||||| || ||||| || ||||| || ||||||||||||||||| |||||||| |
Sbjct: 309 cccccaaagtggtttatcaacataccaagtaccacaagcaaacaaagaatcagtgggcac 368
Query: 297 gtgatgatcctgcatttgt 315
| |||||||| ||||||||
Sbjct: 369 gggatgatccagcatttgt 387
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| |||||||| ||||||| ||||| ||||| ||||||||||| || ||||| |||
Sbjct: 575 aacagtcatgttgtggagcaacatgtggaatggctttatgcatttgatgtacattgcaac 634
Query: 557 tc 558
||
Sbjct: 635 tc 636
>gb|DR686141.1|DR686141 EST1076219 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABC78 3' end, mRNA sequence
Length = 714
Score = 109 bits (55), Expect = 3e-022
Identities = 118/139 (84%)
Strand = Plus / Plus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtactt 236
|||||||||| || | ||||||||||||||| |||||||||||| |||| || || || |
Sbjct: 111 tcaagtggcagcagatggatattgaatacaccttttggcaaatgcttcacctttgcacgt 170
Query: 237 caccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggccc 296
| || ||||| || ||||| || ||||| || ||||||||||||||||| |||||||| |
Sbjct: 171 cccccaaagtggtttatcaacataccaagtaccacaagcaaacaaagaatcagtgggcac 230
Query: 297 gtgatgatcctgcatttgt 315
| |||||||| ||||||||
Sbjct: 231 gggatgatccagcatttgt 249
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| |||||||| ||||||| ||||| ||||| ||||||||||| || ||||| |||
Sbjct: 437 aacagtcatgttgtggagcaacatgtggaatggctttatgcatttgatgtacattgcaac 496
Query: 557 tc 558
||
Sbjct: 497 tc 498
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 686 tacctgaactttctaggatatgatgt 711
||||||||||||||||| ||||||||
Sbjct: 626 tacctgaactttctaggctatgatgt 651
>gb|DR686265.1|DR686265 EST1076343 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABE18 3' end, mRNA sequence
Length = 579
Score = 109 bits (55), Expect = 3e-022
Identities = 118/139 (84%)
Strand = Plus / Plus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtactt 236
|||||||||| || | ||||||||||||||| |||||||||||| |||| || || || |
Sbjct: 134 tcaagtggcagcagatggatattgaatacaccttttggcaaatgcttcacctttgcacgt 193
Query: 237 caccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggccc 296
| || ||||| || ||||| || ||||| || ||||||||||||||||| |||||||| |
Sbjct: 194 cccccaaagtggtttatcaacataccaagtaccacaagcaaacaaagaatcagtgggcac 253
Query: 297 gtgatgatcctgcatttgt 315
| |||||||| ||||||||
Sbjct: 254 gggatgatccagcatttgt 272
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattg 552
||||| |||||||| ||||||| ||||| ||||| ||||||||||| || |||||
Sbjct: 460 aacagtcatgttgtggagcaacatgtggaatggctttatgcatttgatgtacattg 515
>gb|DT630928.1|DT630928 EST1145859 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF250 3' end, mRNA sequence
Length = 803
Score = 109 bits (55), Expect = 3e-022
Identities = 118/139 (84%)
Strand = Plus / Plus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtactt 236
|||||||||| || | ||||||||||||||| |||||||||||| |||| || || || |
Sbjct: 257 tcaagtggcagcagatggatattgaatacaccttttggcaaatgcttcacctttgcacgt 316
Query: 237 caccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggccc 296
| || ||||| || ||||| || ||||| || ||||||||||||||||| |||||||| |
Sbjct: 317 cccccaaagtggtttatcaacataccaagtaccacaagcaaacaaagaatcagtgggcac 376
Query: 297 gtgatgatcctgcatttgt 315
| |||||||| ||||||||
Sbjct: 377 gggatgatccagcatttgt 395
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| |||||||| ||||||| ||||| ||||| ||||||||||| || ||||| |||
Sbjct: 583 aacagtcatgttgtggagcaacatgtggaatggctttatgcatttgatgtacattgcaac 642
Query: 557 tc 558
||
Sbjct: 643 tc 644
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 686 tacctgaactttctaggatatgatgt 711
||||||||||||||||| ||||||||
Sbjct: 771 tacctgaactttctaggctatgatgt 796
>gb|AW010437.1|AW010437 ST06G08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST06G08, mRNA sequence
Length = 719
Score = 101 bits (51), Expect = 7e-020
Identities = 117/139 (84%)
Strand = Plus / Minus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtactt 236
|||||||||| || | ||||||||||||||| |||||||||||| |||| || || || |
Sbjct: 465 tcaagtggcagcagatggatattgaatacaccttttggcaaatgcttcacctttgcacgt 406
Query: 237 caccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggccc 296
| || ||||| || ||||| || ||||| || ||||||||||||||||| |||||||| |
Sbjct: 405 cccccaaagtggtttatcaacataccaagtaccacaagcaaacaaagaatcagtgggcac 346
Query: 297 gtgatgatcctgcatttgt 315
| |||||||| |||||||
Sbjct: 345 gggatgatccaacatttgt 327
>gb|DR685890.1|DR685890 EST1075967 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB945 3' end, mRNA sequence
Length = 367
Score = 87.7 bits (44), Expect = 1e-015
Identities = 117/140 (83%), Gaps = 1/140 (0%)
Strand = Plus / Plus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctct-gtact 235
|||||||||| || | ||||||||||||||| |||||||||||| |||| || | | ||
Sbjct: 208 tcaagtggcagcagatggatattgaatacaccttttggcaaatgcttcaccttttgcacg 267
Query: 236 tcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggcc 295
|| || ||||| || ||||| || ||||| || ||||||||||||||||| ||||||||
Sbjct: 268 tcccccaaagtggtttatcaacataccaagtaccacaagcaaacaaagaatcagtgggca 327
Query: 296 cgtgatgatcctgcatttgt 315
|| ||||| || ||||||||
Sbjct: 328 cgggatgacccagcatttgt 347
>gb|CD021703.1|CD021703 NXNV_155_G08_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_155_G08 5' similar to Arabidopsis thaliana
sequence At2g15250 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 155
Score = 81.8 bits (41), Expect = 6e-014
Identities = 113/139 (81%)
Strand = Plus / Plus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtactt 236
|||||||||| || | ||||||||||||||| |||||||||||| |||| || || || |
Sbjct: 5 tcaagtggcagcagatggatattgaatacaccttttggcaaatgcttcacctttgcacgt 64
Query: 237 caccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggccc 296
| || ||||| ||||| || ||||| || ||||||| |||||||| |||||||| |
Sbjct: 65 cccccaaagtgnnttatcaacataccaagtaccacaagcnnacaaagaatcagtgggcac 124
Query: 297 gtgatgatcctgcatttgt 315
| |||||| | ||||||||
Sbjct: 125 gggatgatncngcatttgt 143
>gb|CO365983.1|CO365983 RTK1_20_A05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_20_A05_A029 5', mRNA sequence
Length = 839
Score = 67.9 bits (34), Expect = 9e-010
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 242 aaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggcccgtgat 301
||||| || ||||| || ||||| || ||||||||||||||||| |||||||| || |||
Sbjct: 827 aaagtggtttatcaacataccaagtaccacaagcaaacaaagaatcagtgggcacgggat 768
Query: 302 gatcctgcatttgt 315
||||| ||||||||
Sbjct: 767 gatccagcatttgt 754
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| |||||||| ||||||| ||||| ||||| ||||||||||| || ||||| |||
Sbjct: 566 aacagtcatgttgtggagcaacatgtggaatggctttatgcatttgatgtacattgcaac 507
Query: 557 tc 558
||
Sbjct: 506 tc 505
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 686 tacctgaactttctaggatatgatgt 711
||||||||||||||||| ||||||||
Sbjct: 377 tacctgaactttctaggctatgatgt 352
>gb|BE662528.1|BE662528 ST87/ST87D04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST87/ST87D04, mRNA sequence
Length = 412
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| |||||||| ||||||| ||||| ||||| ||||||||||| || ||||| |||
Sbjct: 213 aacagtcatgttgtggagcaacatgtggaatggctttatgcatttgatgtacattgcaac 272
Query: 557 tc 558
||
Sbjct: 273 tc 274
>gb|DR050672.1|DR050672 RTBOR1_25_B02.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_B02_A029 3', mRNA sequence
Length = 886
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| |||||||| ||||||| ||||| ||||| ||||||||||| || ||||| |||
Sbjct: 179 aacagtcatgttgtggagcaacatgtggaatggctttatgcatttgatgtacattgcaac 238
Query: 557 tc 558
||
Sbjct: 239 tc 240
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 686 tacctgaactttctaggatatgatgt 711
||||||||||||||||| ||||||||
Sbjct: 368 tacctgaactttctaggctatgatgt 393
>gb|DR080231.1|DR080231 RTFEPL1_21_F06.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_21_F06_A029 3', mRNA sequence
Length = 751
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| |||||||| ||||||| ||||| ||||| ||||||||||| || ||||| |||
Sbjct: 154 aacagtcatgttgtggagcaacatgtggaatggctttatgcatttgatgtacattgcaac 213
Query: 557 tc 558
||
Sbjct: 214 tc 215
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 686 tacctgaactttctaggatatgatgt 711
||||||||||||||||| ||||||||
Sbjct: 343 tacctgaactttctaggctatgatgt 368
>gb|BQ634952.1|BQ634952 NXRV075_B05_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV075_B05 5' similar to Arabidopsis thaliana
sequence At2g15250 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 499
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 686 tacctgaactttctaggatatgatgtt 712
||||||||||||||||| |||||||||
Sbjct: 197 tacctgaactttctaggctatgatgtt 223
>gb|DR385386.1|DR385386 RTHG1_8_G12.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_G12_A029 3', mRNA sequence
Length = 788
Score = 46.1 bits (23), Expect = 0.003
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| |||||||| ||||||| ||||| ||||| ||||||| ||| || ||||| |||
Sbjct: 88 aacagtcatgttgtggagcaacatgtggaatggctttatgcatntgatgtacattgcaac 147
Query: 557 tc 558
||
Sbjct: 148 tc 149
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 686 tacctgaactttctaggatatgatgt 711
||||||||||||||||| ||||||||
Sbjct: 277 tacctgaactttctaggctatgatgt 302
>gb|CF389389.1|CF389389 RTDR2_7_D08.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_7_D08_A021 3', mRNA
sequence
Length = 597
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 686 tacctgaactttctaggatatgatgt 711
||||||||||||||||| ||||||||
Sbjct: 76 tacctgaactttctaggctatgatgt 101
>gb|DR161148.1|DR161148 RTFE1_10_D03.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_D03_A029 3', mRNA sequence
Length = 701
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 686 tacctgaactttctaggatatgatgt 711
||||||||||||||||| ||||||||
Sbjct: 82 tacctgaactttctaggctatgatgt 107
>gb|DR161231.1|DR161231 RTFE1_10_D03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_D03_A029 5', mRNA sequence
Length = 794
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 686 tacctgaactttctaggatatgatgt 711
||||||||||||||||| ||||||||
Sbjct: 755 tacctgaactttctaggctatgatgt 780
>gb|BQ697214.1|BQ697214 NXPV_050_H06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_050_H06 5', mRNA sequence
Length = 595
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 212 tggcaaatggttcatctctg 231
||||||||||||||||||||
Sbjct: 431 tggcaaatggttcatctctg 412
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 138,418
Number of Sequences: 355925
Number of extensions: 138418
Number of successful extensions: 35676
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35616
Number of HSP's gapped (non-prelim): 59
length of query: 1205
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1186
effective length of database: 210,514,662
effective search space: 249670389132
effective search space used: 249670389132
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)