BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950290.2.1
(1442 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF479056.1|CF479056 RTWW3_21_E08.g1_A022 Well-watered lo... 46 0.004
gb|CV031437.1|CV031437 RTNACL1_1_C09.g1_A029 Roots plus add... 46 0.004
gb|CX713730.1|CX713730 RTPQ1_12_B02.g1_A032 Roots treated w... 46 0.004
gb|DR069308.1|DR069308 RTDK1_6_H02.b1_A029 Roots, dark Pinu... 46 0.004
gb|DR069432.1|DR069432 RTDK1_7_F04.b1_A029 Roots, dark Pinu... 46 0.004
gb|DR167446.1|DR167446 RTPHOS1_18_G10.g1_A029 Roots minus p... 46 0.004
gb|DR686416.1|DR686416 EST1076494 Normalized pine embryo li... 46 0.004
gb|DR686925.1|DR686925 EST1077003 Normalized pine embryo li... 46 0.004
gb|DR687571.1|DR687571 EST1077653 Normalized pine embryo li... 46 0.004
gb|DR688335.1|DR688335 EST1078419 Normalized pine embryo li... 46 0.004
gb|DT633406.1|DT633406 EST1148337 Normalized pine embryo li... 46 0.004
gb|DT634728.1|DT634728 EST1149659 Normalized pine embryo li... 46 0.004
gb|CF478970.1|CF478970 RTWW3_21_E08.b1_A022 Well-watered lo... 42 0.063
gb|CV034364.1|CV034364 RTNACL1_40_A11.g1_A029 Roots plus ad... 42 0.063
gb|BF517836.1|BF517836 NXSI_027_G07_F NXSI (Nsf Xylem Side ... 40 0.25
gb|CX647752.1|CX647752 COLD1_19_G12.g1_A029 Root cold Pinus... 40 0.25
gb|DR015405.1|DR015405 STRS1_3_G09.b1_A034 Shoot tip pitch ... 40 0.25
gb|DR015493.1|DR015493 STRS1_3_G09.g1_A034 Shoot tip pitch ... 40 0.25
gb|DR092120.1|DR092120 RTAL1_26_C03.g1_A029 Roots plus adde... 40 0.25
gb|DR385091.1|DR385091 RTHG1_6_C08.g1_A029 Roots plus added... 40 0.25
gb|DR689144.1|DR689144 EST1079230 Normalized pine embryo li... 40 0.25
gb|DT634416.1|DT634416 EST1149347 Normalized pine embryo li... 40 0.25
gb|DT635000.1|DT635000 EST1149931 Normalized pine embryo li... 40 0.25
>gb|CF479056.1|CF479056 RTWW3_21_E08.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_E08_A022 5', mRNA sequence
Length = 745
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 489 catccccaggctcttgcgcaatgtgagcacacatt 523
|||||||||||||| | |||||||||||||||||
Sbjct: 381 catccccaggctctctctcaatgtgagcacacatt 415
Score = 42.1 bits (21), Expect = 0.063
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 798 tttaaggcacttgctgtatttgcactgagggacatcaacctcacaaagattgaaagt 854
|||||||||||||| || ||||| || || || ||||| || |||||||| ||||||
Sbjct: 687 tttaaggcacttgcagtgtttgctctaagagatatcaatctaacaaagatagaaagt 743
>gb|CV031437.1|CV031437 RTNACL1_1_C09.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_1_C09_A029 5', mRNA sequence
Length = 773
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 489 catccccaggctcttgcgcaatgtgagcacacatt 523
|||||||||||||| | |||||||||||||||||
Sbjct: 661 catccccaggctctctctcaatgtgagcacacatt 695
>gb|CX713730.1|CX713730 RTPQ1_12_B02.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_12_B02_A032 5', mRNA sequence
Length = 515
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 489 catccccaggctcttgcgcaatgtgagcacacatt 523
|||||||||||||| | |||||||||||||||||
Sbjct: 370 catccccaggctctctctcaatgtgagcacacatt 404
>gb|DR069308.1|DR069308 RTDK1_6_H02.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_6_H02_A029 3', mRNA sequence
Length = 866
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 489 catccccaggctcttgcgcaatgtgagcacacatt 523
|||||||||||||| | |||||||||||||||||
Sbjct: 225 catccccaggctctctctcaatgtgagcacacatt 191
>gb|DR069432.1|DR069432 RTDK1_7_F04.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_7_F04_A029 3', mRNA sequence
Length = 924
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 489 catccccaggctcttgcgcaatgtgagcacacatt 523
|||||||||||||| | |||||||||||||||||
Sbjct: 283 catccccaggctctctctcaatgtgagcacacatt 249
>gb|DR167446.1|DR167446 RTPHOS1_18_G10.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_18_G10_A029 5', mRNA sequence
Length = 829
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 489 catccccaggctcttgcgcaatgtgagcacacatt 523
|||||||||||||| | |||||||||||||||||
Sbjct: 145 catccccaggctctctctcaatgtgagcacacatt 179
Score = 42.1 bits (21), Expect = 0.063
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 798 tttaaggcacttgctgtatttgcactgagggacatcaacctcacaaagattgaaagt 854
|||||||||||||| || ||||| || || || ||||| || |||||||| ||||||
Sbjct: 451 tttaaggcacttgcagtgtttgctctaagagatatcaatctaacaaagatagaaagt 507
>gb|DR686416.1|DR686416 EST1076494 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABF79 3' end, mRNA sequence
Length = 770
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 489 catccccaggctcttgcgcaatgtgagcacacatt 523
|||||||||||||| | |||||||||||||||||
Sbjct: 588 catccccaggctctctctcaatgtgagcacacatt 622
>gb|DR686925.1|DR686925 EST1077003 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABL37 3' end, mRNA sequence
Length = 723
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 489 catccccaggctcttgcgcaatgtgagcacacatt 523
|||||||||||||| | |||||||||||||||||
Sbjct: 621 catccccaggctctctctcaatgtgagcacacatt 655
>gb|DR687571.1|DR687571 EST1077653 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABU09 3' end, mRNA sequence
Length = 824
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 489 catccccaggctcttgcgcaatgtgagcacacatt 523
|||||||||||||| | |||||||||||||||||
Sbjct: 709 catccccaggctctctctcaatgtgagcacacatt 743
>gb|DR688335.1|DR688335 EST1078419 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC508 3' end, mRNA sequence
Length = 827
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 489 catccccaggctcttgcgcaatgtgagcacacatt 523
|||||||||||||| | |||||||||||||||||
Sbjct: 711 catccccaggctctctctcaatgtgagcacacatt 745
>gb|DT633406.1|DT633406 EST1148337 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFU57 3' end, mRNA sequence
Length = 777
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 489 catccccaggctcttgcgcaatgtgagcacacatt 523
|||||||||||||| | |||||||||||||||||
Sbjct: 596 catccccaggctctctctcaatgtgagcacacatt 630
>gb|DT634728.1|DT634728 EST1149659 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG917 3' end, mRNA sequence
Length = 766
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 489 catccccaggctcttgcgcaatgtgagcacacatt 523
|||||||||||||| | |||||||||||||||||
Sbjct: 721 catccccaggctctctctcaatgtgagcacacatt 755
>gb|CF478970.1|CF478970 RTWW3_21_E08.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_E08_A022 3', mRNA sequence
Length = 595
Score = 42.1 bits (21), Expect = 0.063
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 798 tttaaggcacttgctgtatttgcactgagggacatcaacctcacaaagattgaaagt 854
|||||||||||||| || ||||| || || || ||||| || |||||||| ||||||
Sbjct: 4 tttaaggcacttgcagtgtttgctctaagagatatcaatctaacaaagatagaaagt 60
>gb|CV034364.1|CV034364 RTNACL1_40_A11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_40_A11_A029 5', mRNA sequence
Length = 810
Score = 42.1 bits (21), Expect = 0.063
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 798 tttaaggcacttgctgtatttgcactgagggacatcaacctcacaaagattgaaagt 854
|||||||||||||| || ||||| || || || ||||| || |||||||| ||||||
Sbjct: 685 tttaaggcacttgcagtgtttgctctaagagatatcaatctaacaaagatagaaagt 629
>gb|BF517836.1|BF517836 NXSI_027_G07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_027_G07 5' similar to Arabidopsis thaliana
sequence At1g08250 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 488 tcatccccaggctcttgcgcaatg 511
|||||||||||||||||| |||||
Sbjct: 1 tcatccccaggctcttgctcaatg 24
>gb|CX647752.1|CX647752 COLD1_19_G12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_19_G12_A029 5', mRNA sequence
Length = 645
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 801 aaggcacttgctgtatttgc 820
||||||||||||||||||||
Sbjct: 229 aaggcacttgctgtatttgc 248
>gb|DR015405.1|DR015405 STRS1_3_G09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_3_G09_A034 3', mRNA sequence
Length = 843
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 801 aaggcacttgctgtatttgc 820
||||||||||||||||||||
Sbjct: 92 aaggcacttgctgtatttgc 111
>gb|DR015493.1|DR015493 STRS1_3_G09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_3_G09_A034 5', mRNA sequence
Length = 878
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 801 aaggcacttgctgtatttgc 820
||||||||||||||||||||
Sbjct: 823 aaggcacttgctgtatttgc 842
>gb|DR092120.1|DR092120 RTAL1_26_C03.g1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_26_C03_A029 5', mRNA sequence
Length = 618
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1281 ttatatgtttcatgttggag 1300
||||||||||||||||||||
Sbjct: 93 ttatatgtttcatgttggag 74
>gb|DR385091.1|DR385091 RTHG1_6_C08.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_6_C08_A029 5', mRNA sequence
Length = 851
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1281 ttatatgtttcatgttggag 1300
||||||||||||||||||||
Sbjct: 751 ttatatgtttcatgttggag 770
>gb|DR689144.1|DR689144 EST1079230 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACE75 3' end, mRNA sequence
Length = 712
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1188 tttgctggtgatttttctga 1207
||||||||||||||||||||
Sbjct: 57 tttgctggtgatttttctga 76
>gb|DT634416.1|DT634416 EST1149347 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG572 3' end, mRNA sequence
Length = 724
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1188 tttgctggtgatttttctga 1207
||||||||||||||||||||
Sbjct: 149 tttgctggtgatttttctga 168
>gb|DT635000.1|DT635000 EST1149931 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGC11 3' end, mRNA sequence
Length = 263
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1188 tttgctggtgatttttctga 1207
||||||||||||||||||||
Sbjct: 148 tttgctggtgatttttctga 167
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 157,286
Number of Sequences: 355925
Number of extensions: 157286
Number of successful extensions: 39711
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39674
Number of HSP's gapped (non-prelim): 37
length of query: 1442
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1423
effective length of database: 210,514,662
effective search space: 299562364026
effective search space used: 299562364026
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)