BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950160.2.1
(846 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX249940.1|BX249940 BX249940 Pinus pinaster differenciat... 42 0.036
gb|BI202957.1|BI202957 NXPV_093_C03_F NXPV (Nsf Xylem Plani... 42 0.036
gb|CX713265.1|CX713265 RTPQ1_8_B07.b1_A032 Roots treated wi... 42 0.036
gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C fo... 42 0.036
gb|DR015694.1|DR015694 STRS1_5_C07.b1_A034 Shoot tip pitch ... 42 0.036
gb|DR052952.1|DR052952 RTCA1_8_A01.b1_A029 Roots minus calc... 42 0.036
gb|DR060177.1|DR060177 RTNIT1_26_E10.b1_A029 Roots minus ni... 42 0.036
gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfu... 42 0.036
gb|DR169090.1|DR169090 RTPHOS1_30_A06.b1_A029 Roots minus p... 42 0.036
gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo li... 42 0.036
gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo li... 42 0.036
>gb|BX249940.1|BX249940 BX249940 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP030E08, mRNA sequence
Length = 629
Score = 42.1 bits (21), Expect = 0.036
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 580 agccatggcttcatatttccattgtagtg 608
|||||||| ||||||||||||||| ||||
Sbjct: 424 agccatggtttcatatttccattgaagtg 452
>gb|BI202957.1|BI202957 NXPV_093_C03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_093_C03 5' similar to Arabidopsis
thaliana sequence At3g25140 glycosyl transferase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 326
Score = 42.1 bits (21), Expect = 0.036
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccattgtagtg 608
|||||||| ||||||||||||||| ||||
Sbjct: 266 agccatggtttcatatttccattgaagtg 238
>gb|CX713265.1|CX713265 RTPQ1_8_B07.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_B07_A032 3', mRNA sequence
Length = 702
Score = 42.1 bits (21), Expect = 0.036
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccattgtagtg 608
|||||||| ||||||||||||||| ||||
Sbjct: 336 agccatggtttcatatttccattgaagtg 308
>gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_C03_A029 3', mRNA sequence
Length = 914
Score = 42.1 bits (21), Expect = 0.036
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccattgtagtg 608
|||||||| ||||||||||||||| ||||
Sbjct: 414 agccatggtttcatatttccattgaagtg 386
>gb|DR015694.1|DR015694 STRS1_5_C07.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C07_A034 3', mRNA sequence
Length = 690
Score = 42.1 bits (21), Expect = 0.036
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccattgtagtg 608
|||||||| ||||||||||||||| ||||
Sbjct: 167 agccatggtttcatatttccattgaagtg 139
>gb|DR052952.1|DR052952 RTCA1_8_A01.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_8_A01_A029 3', mRNA sequence
Length = 404
Score = 42.1 bits (21), Expect = 0.036
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccattgtagtg 608
|||||||| ||||||||||||||| ||||
Sbjct: 40 agccatggtttcatatttccattgaagtg 12
>gb|DR060177.1|DR060177 RTNIT1_26_E10.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_26_E10_A029 3', mRNA sequence
Length = 793
Score = 42.1 bits (21), Expect = 0.036
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccattgtagtg 608
|||||||| ||||||||||||||| ||||
Sbjct: 130 agccatggtttcatatttccattgaagtg 102
>gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_E05_A029 3', mRNA sequence
Length = 820
Score = 42.1 bits (21), Expect = 0.036
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccattgtagtg 608
|||||||| ||||||||||||||| ||||
Sbjct: 550 agccatggtttcatatttccattgaagtg 522
>gb|DR169090.1|DR169090 RTPHOS1_30_A06.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_30_A06_A029 3', mRNA sequence
Length = 710
Score = 42.1 bits (21), Expect = 0.036
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccattgtagtg 608
|||||||| ||||||||||||||| ||||
Sbjct: 361 agccatggtttcatatttccattgaagtg 333
>gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACF91 3' end, mRNA sequence
Length = 854
Score = 42.1 bits (21), Expect = 0.036
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccattgtagtg 608
|||||||| ||||||||||||||| ||||
Sbjct: 534 agccatggtttcatatttccattgaagtg 506
>gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGF84 3' end, mRNA sequence
Length = 768
Score = 42.1 bits (21), Expect = 0.036
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccattgtagtg 608
|||||||| ||||||||||||||| ||||
Sbjct: 542 agccatggtttcatatttccattgaagtg 514
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 102,979
Number of Sequences: 355925
Number of extensions: 102979
Number of successful extensions: 27451
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27440
Number of HSP's gapped (non-prelim): 11
length of query: 846
length of database: 217,277,237
effective HSP length: 19
effective length of query: 827
effective length of database: 210,514,662
effective search space: 174095625474
effective search space used: 174095625474
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)