BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943856.2.2
(661 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE761915.1|BE761915 NXCI_071_F01_F NXCI (Nsf Xylem Compr... 46 0.002
gb|DR025032.1|DR025032 STRS1_69_D12.b1_A034 Shoot tip pitch... 46 0.002
gb|DR689452.1|DR689452 EST1079538 Normalized pine embryo li... 46 0.002
gb|DT635466.1|DT635466 EST1150397 Normalized pine embryo li... 46 0.002
gb|DR177096.1|DR177096 RTMNUT1_3_C06.b1_A029 Roots minus mi... 44 0.007
gb|DR177171.1|DR177171 RTMNUT1_3_C06.g1_A029 Roots minus mi... 44 0.007
gb|AL750247.1|AL750247 AL750247 AS Pinus pinaster cDNA clon... 42 0.028
gb|AL750760.1|AL750760 AL750760 RN Pinus pinaster cDNA clon... 38 0.44
gb|CX646740.1|CX646740 COLD1_11_E11.b1_A029 Root cold Pinus... 38 0.44
gb|DR015549.1|DR015549 STRS1_4_E04.b1_A034 Shoot tip pitch ... 38 0.44
gb|DR020931.1|DR020931 STRS1_40_F03.b1_A034 Shoot tip pitch... 38 0.44
gb|DR072527.1|DR072527 RTDK1_26_H04.g1_A029 Roots, dark Pin... 38 0.44
gb|DR089602.1|DR089602 RTAL1_9_F02.g1_A029 Roots plus added... 38 0.44
gb|DR177270.1|DR177270 RTMNUT1_4_F06.b1_A029 Roots minus mi... 38 0.44
gb|DR178110.1|DR178110 RTMNUT1_9_H11.b1_A029 Roots minus mi... 38 0.44
gb|DR178476.1|DR178476 RTMNUT1_12_C04.b1_A029 Roots minus m... 38 0.44
gb|DR682734.1|DR682734 EST1072809 Normalized pine embryo li... 38 0.44
>gb|BE761915.1|BE761915 NXCI_071_F01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_071_F01 5', mRNA sequence
Length = 336
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 83 gggcttcgtcgacgccgacatct 105
|||||||||||||||||||||||
Sbjct: 189 gggcttcgtcgacgccgacatct 167
>gb|DR025032.1|DR025032 STRS1_69_D12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_69_D12_A034 3', mRNA sequence
Length = 846
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 83 gggcttcgtcgacgccgacatct 105
|||||||||||||||||||||||
Sbjct: 742 gggcttcgtcgacgccgacatct 764
>gb|DR689452.1|DR689452 EST1079538 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACI83 3' end, mRNA sequence
Length = 800
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 83 gggcttcgtcgacgccgacatct 105
|||||||||||||||||||||||
Sbjct: 214 gggcttcgtcgacgccgacatct 192
>gb|DT635466.1|DT635466 EST1150397 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGH17 3' end, mRNA sequence
Length = 759
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 83 gggcttcgtcgacgccgacatct 105
|||||||||||||||||||||||
Sbjct: 222 gggcttcgtcgacgccgacatct 200
>gb|DR177096.1|DR177096 RTMNUT1_3_C06.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_3_C06_A029 3', mRNA sequence
Length = 753
Score = 44.1 bits (22), Expect = 0.007
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 222 gacgctcacctctacgttttcaacaacggc 251
||||| || |||||||||||||||||||||
Sbjct: 336 gacgcccatctctacgttttcaacaacggc 365
>gb|DR177171.1|DR177171 RTMNUT1_3_C06.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_3_C06_A029 5', mRNA sequence
Length = 745
Score = 44.1 bits (22), Expect = 0.007
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 222 gacgctcacctctacgttttcaacaacggc 251
||||| || |||||||||||||||||||||
Sbjct: 619 gacgcccatctctacgttttcaacaacggc 648
>gb|AL750247.1|AL750247 AL750247 AS Pinus pinaster cDNA clone AS07D04 similar to ATP
SYNTHASE, mRNA sequence
Length = 680
Score = 42.1 bits (21), Expect = 0.028
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 83 gggcttcgtcgacgccgacat 103
|||||||||||||||||||||
Sbjct: 102 gggcttcgtcgacgccgacat 82
>gb|AL750760.1|AL750760 AL750760 RN Pinus pinaster cDNA clone RN07A05 similar to
PHOSPHATIDYLSERINE DECARBOXYLASE, mRNA sequence
Length = 688
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 380 tcttcttcttcttcgtcaa 398
|||||||||||||||||||
Sbjct: 549 tcttcttcttcttcgtcaa 531
>gb|CX646740.1|CX646740 COLD1_11_E11.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_11_E11_A029 3', mRNA sequence
Length = 844
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 380 tcttcttcttcttcgtcaa 398
|||||||||||||||||||
Sbjct: 546 tcttcttcttcttcgtcaa 528
>gb|DR015549.1|DR015549 STRS1_4_E04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_4_E04_A034 3', mRNA sequence
Length = 844
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 380 tcttcttcttcttcgtcaa 398
|||||||||||||||||||
Sbjct: 546 tcttcttcttcttcgtcaa 528
>gb|DR020931.1|DR020931 STRS1_40_F03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_40_F03_A034 3', mRNA sequence
Length = 732
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 380 tcttcttcttcttcgtcaa 398
|||||||||||||||||||
Sbjct: 435 tcttcttcttcttcgtcaa 417
>gb|DR072527.1|DR072527 RTDK1_26_H04.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_26_H04_A029 5', mRNA sequence
Length = 600
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 365 tttctttattttcgttcttcttcttct 391
||||||| ||||| |||||||||||||
Sbjct: 326 tttctttcttttccttcttcttcttct 352
>gb|DR089602.1|DR089602 RTAL1_9_F02.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_9_F02_A029 5', mRNA sequence
Length = 686
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 379 ttcttcttcttcttcgtca 397
|||||||||||||||||||
Sbjct: 410 ttcttcttcttcttcgtca 392
>gb|DR177270.1|DR177270 RTMNUT1_4_F06.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_4_F06_A029 3', mRNA sequence
Length = 764
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 380 tcttcttcttcttcgtcaa 398
|||||||||||||||||||
Sbjct: 411 tcttcttcttcttcgtcaa 393
>gb|DR178110.1|DR178110 RTMNUT1_9_H11.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_9_H11_A029 3', mRNA sequence
Length = 832
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 380 tcttcttcttcttcgtcaa 398
|||||||||||||||||||
Sbjct: 565 tcttcttcttcttcgtcaa 547
>gb|DR178476.1|DR178476 RTMNUT1_12_C04.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_12_C04_A029 3', mRNA sequence
Length = 782
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 380 tcttcttcttcttcgtcaa 398
|||||||||||||||||||
Sbjct: 513 tcttcttcttcttcgtcaa 495
>gb|DR682734.1|DR682734 EST1072809 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAB82, mRNA sequence
Length = 620
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 380 tcttcttcttcttcgtcaa 398
|||||||||||||||||||
Sbjct: 252 tcttcttcttcttcgtcaa 270
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 97,030
Number of Sequences: 355925
Number of extensions: 97030
Number of successful extensions: 33060
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33030
Number of HSP's gapped (non-prelim): 28
length of query: 661
length of database: 217,277,237
effective HSP length: 19
effective length of query: 642
effective length of database: 210,514,662
effective search space: 135150413004
effective search space used: 135150413004
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)