BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943843.2.1
(2639 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ634118.1|BQ634118 NXRV064_A06_F NXRV (Nsf Xylem Root w... 76 8e-012
gb|CR354662.1|CR354662 CR354662 Pinus pinaster differenciat... 76 8e-012
gb|CO363574.1|CO363574 RTK1_10_C06.g1_A029 Roots minus pota... 76 8e-012
gb|DR025351.1|DR025351 STRS1_71_D02.b1_A034 Shoot tip pitch... 76 8e-012
gb|DR080806.1|DR080806 RTFEPL1_25_H01.b1_A029 Roots plus ad... 76 8e-012
gb|DR110345.1|DR110345 RTS1_10_H02.b1_A029 Roots minus sulf... 76 8e-012
gb|DR119595.1|DR119595 RTMG1_24_F02.b1_A029 Roots minus mag... 76 8e-012
gb|DR160885.1|DR160885 RTFE1_8_C12.g1_A029 Roots minus iron... 76 8e-012
dbj|BD266934.1| Compositions isolated from plant cells and ... 76 8e-012
gb|CX649642.1|CX649642 COLD1_36_C07.g1_A029 Root cold Pinus... 74 3e-011
gb|DR093254.1|DR093254 STRR1_7_C09.b1_A033 Stem Response Re... 72 1e-010
gb|DR093330.1|DR093330 STRR1_7_C09.g1_A033 Stem Response Re... 72 1e-010
gb|DR120195.1|DR120195 RTMG1_28_D05.b1_A029 Roots minus mag... 72 1e-010
gb|AW290410.1|AW290410 NXNV020A01F Nsf Xylem Normal wood Ve... 68 2e-009
gb|CD027069.1|CD027069 NXNV020A01 Nsf Xylem Normal wood Ver... 68 2e-009
gb|AW869910.1|AW869910 NXNV_122_H12_F Nsf Xylem Normal wood... 64 3e-008
gb|DR389058.1|DR389058 RTHG1_32_D10.b1_A029 Roots plus adde... 62 1e-007
gb|AW626677.1|AW626677 NXNV068C12 Nsf Xylem Normal wood Ver... 56 8e-006
gb|BF517925.1|BF517925 NXSI_031_F12_F NXSI (Nsf Xylem Side ... 56 8e-006
gb|AW289775.1|AW289775 NXNV006A05F Nsf Xylem Normal wood Ve... 52 1e-004
gb|BX250129.1|BX250129 BX250129 Pinus pinaster differenciat... 52 1e-004
gb|CD028354.1|CD028354 NXNV006A05 Nsf Xylem Normal wood Ver... 52 1e-004
gb|AW698159.1|AW698159 NXNV_074_A02_F Nsf Xylem Normal wood... 48 0.002
gb|CO162520.1|CO162520 FLD1_35_G08.g1_A029 Root flooded Pin... 48 0.002
gb|CV032712.1|CV032712 RTNACL1_17_H06.g1_A029 Roots plus ad... 48 0.002
gb|CX652877.1|CX652877 COLD1_62_C06.b1_A029 Root cold Pinus... 48 0.002
gb|CX652963.1|CX652963 COLD1_62_C06.g1_A029 Root cold Pinus... 48 0.002
gb|CX714166.1|CX714166 RTPQ1_18_E02.g1_A032 Roots treated w... 48 0.002
gb|DR092366.1|DR092366 STRR1_1_A05.b1_A033 Stem Response Re... 48 0.002
gb|DR092446.1|DR092446 STRR1_1_A05.g1_A033 Stem Response Re... 48 0.002
gb|DR161873.1|DR161873 RTFE1_14_A03.g1_A029 Roots minus iro... 48 0.002
gb|DR176904.1|DR176904 RTMNUT1_1_F02.g1_A029 Roots minus mi... 48 0.002
gb|AW043211.1|AW043211 ST30F05 Pine TriplEx shoot tip libra... 42 0.11
gb|BE643781.1|BE643781 NXCI_047_B08_F NXCI (Nsf Xylem Compr... 40 0.45
gb|BG040559.1|BG040559 NXSI_112_E09_F NXSI (Nsf Xylem Side ... 40 0.45
gb|CF390757.1|CF390757 RTDR2_17_F04.g1_A021 Loblolly pine r... 40 0.45
gb|BX682640.1|BX682640 BX682640 Pinus pinaster differenciat... 40 0.45
gb|CO161607.1|CO161607 FLD1_30_B03.b1_A029 Root flooded Pin... 40 0.45
gb|CO161683.1|CO161683 FLD1_30_B03.g1_A029 Root flooded Pin... 40 0.45
gb|CO172072.1|CO172072 NDL1_27_A05.b1_A029 Needles control ... 40 0.45
gb|CO172120.1|CO172120 NDL1_27_A05.g1_A029 Needles control ... 40 0.45
gb|CO201586.1|CO201586 RTCNT2_6_F08.g1_A029 Root control 2 ... 40 0.45
gb|CV035481.1|CV035481 RTNACL1_16_H10.b1_A029 Roots plus ad... 40 0.45
gb|CV035564.1|CV035564 RTNACL1_16_H10.g1_A029 Roots plus ad... 40 0.45
gb|DR015117.1|DR015117 STRS1_1_D02.g1_A034 Shoot tip pitch ... 40 0.45
gb|DR018275.1|DR018275 STRS1_21_E09.g1_A034 Shoot tip pitch... 40 0.45
gb|DR025437.1|DR025437 STRS1_71_D02.g1_A034 Shoot tip pitch... 40 0.45
gb|DR058281.1|DR058281 RTNIT1_10_H03.g1_A029 Roots minus ni... 40 0.45
gb|DR068516.1|DR068516 RTDK1_1_G01.b1_A029 Roots, dark Pinu... 40 0.45
gb|DR090764.1|DR090764 RTAL1_17_E12.b1_A029 Roots plus adde... 40 0.45
gb|DR092993.1|DR092993 STRR1_5_H05.b1_A033 Stem Response Re... 40 0.45
gb|DR093078.1|DR093078 STRR1_5_H05.g1_A033 Stem Response Re... 40 0.45
gb|DR109483.1|DR109483 RTS1_2_G03.b1_A029 Roots minus sulfu... 40 0.45
gb|DR120272.1|DR120272 RTMG1_28_D05.g2_A029 Roots minus mag... 40 0.45
gb|DR160794.1|DR160794 RTFE1_8_C12.b1_A029 Roots minus iron... 40 0.45
gb|DR166493.1|DR166493 RTPHOS1_12_H08.b2_A029 Roots minus p... 40 0.45
gb|DR178777.1|DR178777 RTMNUT1_14_A01.b1_A029 Roots minus m... 40 0.45
gb|DR178856.1|DR178856 RTMNUT1_14_A01.g1_A029 Roots minus m... 40 0.45
gb|DR388192.1|DR388192 RTHG1_26_E06.g1_A029 Roots plus adde... 40 0.45
gb|DR682015.1|DR682015 EST1072090 Normalized pine embryo li... 40 0.45
gb|DR692133.1|DR692133 EST1082221 Normalized pine embryo li... 40 0.45
gb|DR742243.1|DR742243 RTCU1_2_F02.g1_A029 Roots plus added... 40 0.45
gb|DT637288.1|DT637288 EST1152219 Normalized pine embryo li... 40 0.45
gb|AF286608.1| Pinus taeda clone PtTX3055 microsatellite se... 40 0.45
dbj|BD267217.1| Compositions isolated from plant cells and ... 40 0.45
>gb|BQ634118.1|BQ634118 NXRV064_A06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV064_A06 5' similar to Arabidopsis thaliana
sequence At4g22130 serine/threonine protein kinase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 429
Score = 75.8 bits (38), Expect = 8e-012
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 454 cgaaccaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctggaca 513
|||||||||||||||||||| || |||||||| || | |||||||||||||||||| |
Sbjct: 305 cgaaccaatgcttgcaccacttcagacattggaggacggaattctggttcaggctgaatg 246
Query: 514 cacagggcaaggacatcagcaaatcgggatagagattt 551
|| ||||||| | ||||||||| || || ||||||||
Sbjct: 245 cagagggcaataatatcagcaaagcgcgagagagattt 208
>gb|CR354662.1|CR354662 CR354662 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 124F01, mRNA sequence
Length = 497
Score = 75.8 bits (38), Expect = 8e-012
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 454 cgaaccaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctggaca 513
|||||||||||||||||||| || |||||||| || | |||||||||||||||||| |
Sbjct: 188 cgaaccaatgcttgcaccacttcagacattggaggacggaattctggttcaggctgaatg 129
Query: 514 cacagggcaaggacatcagcaaatcgggatagagattt 551
|| ||||||| | ||||||||| || || ||||||||
Sbjct: 128 cagagggcaataatatcagcaaagcgcgagagagattt 91
>gb|CO363574.1|CO363574 RTK1_10_C06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_10_C06_A029 5', mRNA sequence
Length = 829
Score = 75.8 bits (38), Expect = 8e-012
Identities = 83/98 (84%)
Strand = Plus / Plus
Query: 454 cgaaccaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctggaca 513
|||||||||||||||||||| || |||||||| || | |||||||||||||||||| |
Sbjct: 365 cgaaccaatgcttgcaccacttcagacattggaggacggaattctggttcaggctgaatg 424
Query: 514 cacagggcaaggacatcagcaaatcgggatagagattt 551
|| ||||||| | ||||||||| || || ||||||||
Sbjct: 425 cagagggcaataatatcagcaaagcgcgagagagattt 462
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 865 agcaaaatatttgacgacttgaaattcttatg 896
||||||||||| ||||||||||| || |||||
Sbjct: 779 agcaaaatattagacgacttgaattttttatg 810
>gb|DR025351.1|DR025351 STRS1_71_D02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_71_D02_A034 3', mRNA sequence
Length = 772
Score = 75.8 bits (38), Expect = 8e-012
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 454 cgaaccaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctggaca 513
|||||||||||||||||||| || |||||||| || | |||||||||||||||||| |
Sbjct: 379 cgaaccaatgcttgcaccacttcagacattggaggacggaattctggttcaggctgaatg 320
Query: 514 cacagggcaaggacatcagcaaatcgggatagagattt 551
|| ||||||| | ||||||||| || || ||||||||
Sbjct: 319 cagagggcaataatatcagcaaagcgcgagagagattt 282
>gb|DR080806.1|DR080806 RTFEPL1_25_H01.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_25_H01_A029 3', mRNA sequence
Length = 887
Score = 75.8 bits (38), Expect = 8e-012
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 454 cgaaccaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctggaca 513
|||||||||||||||||||| || |||||||| || | |||||||||||||||||| |
Sbjct: 489 cgaaccaatgcttgcaccacttcagacattggaggacggaattctggttcaggctgaatg 430
Query: 514 cacagggcaaggacatcagcaaatcgggatagagattt 551
|| ||||||| | ||||||||| || || ||||||||
Sbjct: 429 cagagggcaataatatcagcaaagcgcgagagagattt 392
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 865 agcaaaatatttgacgacttgaaattcttatg 896
||||||||||| ||||||||||| || |||||
Sbjct: 75 agcaaaatattagacgacttgaattttttatg 44
>gb|DR110345.1|DR110345 RTS1_10_H02.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_10_H02_A029 3', mRNA sequence
Length = 780
Score = 75.8 bits (38), Expect = 8e-012
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 454 cgaaccaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctggaca 513
|||||||||||||||||||| || |||||||| || | |||||||||||||||||| |
Sbjct: 386 cgaaccaatgcttgcaccacttcagacattggaggacggaattctggttcaggctgaatg 327
Query: 514 cacagggcaaggacatcagcaaatcgggatagagattt 551
|| ||||||| | ||||||||| || || ||||||||
Sbjct: 326 cagagggcaataatatcagcaaagcgcgagagagattt 289
>gb|DR119595.1|DR119595 RTMG1_24_F02.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_24_F02_A029 3', mRNA sequence
Length = 774
Score = 75.8 bits (38), Expect = 8e-012
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 454 cgaaccaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctggaca 513
|||||||||||||||||||| || |||||||| || | |||||||||||||||||| |
Sbjct: 387 cgaaccaatgcttgcaccacttcagacattggaggacggaattctggttcaggctgaatg 328
Query: 514 cacagggcaaggacatcagcaaatcgggatagagattt 551
|| ||||||| | ||||||||| || || ||||||||
Sbjct: 327 cagagggcaataatatcagcaaagcgcgagagagattt 290
>gb|DR160885.1|DR160885 RTFE1_8_C12.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_8_C12_A029 5', mRNA sequence
Length = 862
Score = 75.8 bits (38), Expect = 8e-012
Identities = 83/98 (84%)
Strand = Plus / Plus
Query: 454 cgaaccaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctggaca 513
|||||||||||||||||||| || |||||||| || | |||||||||||||||||| |
Sbjct: 374 cgaaccaatgcttgcaccacttcagacattggaggacggaattctggttcaggctgaatg 433
Query: 514 cacagggcaaggacatcagcaaatcgggatagagattt 551
|| ||||||| | ||||||||| || || ||||||||
Sbjct: 434 cagagggcaataatatcagcaaagcgcgagagagattt 471
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 865 agcaaaatatttgacgacttgaaattcttatg 896
||||||||||| ||||||||||| || |||||
Sbjct: 788 agcaaaatattagacgacttgaattttttatg 819
>dbj|BD266934.1| Compositions isolated from plant cells and utilization of the same in
modifying plant cell signal transduction
Length = 2513
Score = 75.8 bits (38), Expect = 8e-012
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 454 cgaaccaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctggaca 513
|||||||||||||||||||| || |||||||| || | |||||||||||||||||| |
Sbjct: 2104 cgaaccaatgcttgcaccacttcagacattggaggacggaattctggttcaggctgaatg 2045
Query: 514 cacagggcaaggacatcagcaaatcgggatagagattt 551
|| ||||||| | ||||||||| || || ||||||||
Sbjct: 2044 cagagggcaataatatcagcaaagcgcgagagagattt 2007
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 865 agcaaaatatttgacgacttgaaattcttatg 896
||||||||||| ||||||||||| || |||||
Sbjct: 1690 agcaaaatattagacgacttgaattttttatg 1659
>gb|CX649642.1|CX649642 COLD1_36_C07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_36_C07_A029 5', mRNA sequence
Length = 438
Score = 73.8 bits (37), Expect = 3e-011
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 455 gaaccaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctggacac 514
||||||||||||||||||| || |||||||| || | |||||||||||||||||| | |
Sbjct: 438 gaaccaatgcttgcaccacttcagacattggaggacggaattctggttcaggctgaatgc 379
Query: 515 acagggcaaggacatcagcaaatcgggatagagattt 551
| ||||||| | ||||||||| || || ||||||||
Sbjct: 378 agagggcaataatatcagcaaagcgcgagagagattt 342
>gb|DR093254.1|DR093254 STRR1_7_C09.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_7_C09_A033 3', mRNA sequence
Length = 527
Score = 71.9 bits (36), Expect = 1e-010
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 454 cgaaccaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctg 509
|||||||||||||||||||| || |||||||| || | ||||||||||||||||||
Sbjct: 126 cgaaccaatgcttgcaccacttcagacattggaggacggaattctggttcaggctg 71
>gb|DR093330.1|DR093330 STRR1_7_C09.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_7_C09_A033 5', mRNA sequence
Length = 512
Score = 71.9 bits (36), Expect = 1e-010
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 454 cgaaccaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctg 509
|||||||||||||||||||| || |||||||| || | ||||||||||||||||||
Sbjct: 97 cgaaccaatgcttgcaccacatcagacattggaggacggaattctggttcaggctg 42
>gb|DR120195.1|DR120195 RTMG1_28_D05.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_28_D05_A029 3', mRNA sequence
Length = 463
Score = 71.9 bits (36), Expect = 1e-010
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 454 cgaaccaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctg 509
|||||||||||||||||||| || |||||||| || | ||||||||||||||||||
Sbjct: 66 cgaaccaatgcttgcaccacttcagacattggaggacggaattctggttcaggctg 11
>gb|AW290410.1|AW290410 NXNV020A01F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV020A01 5', mRNA sequence
Length = 483
Score = 67.9 bits (34), Expect = 2e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 454 cgaaccaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctggaca 513
|||||||| ||||||||||| || |||||||| || | |||||||||||||||||| |
Sbjct: 188 cgaaccaaagcttgcaccacttcagacattggaggacggaattctggttcaggctgaatg 129
Query: 514 cacagggcaaggacatcagcaaatcgggatagagattt 551
|| ||||||| | ||||||||| || || ||||||||
Sbjct: 128 cagagggcaataatatcagcaaagcgcgagagagattt 91
>gb|CD027069.1|CD027069 NXNV020A01 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV020A01 5' similar to Arabidopsis thaliana sequence
At4g22130 serine/threonine protein kinase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 483
Score = 67.9 bits (34), Expect = 2e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 454 cgaaccaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctggaca 513
|||||||| ||||||||||| || |||||||| || | |||||||||||||||||| |
Sbjct: 188 cgaaccaaagcttgcaccacttcagacattggaggacggaattctggttcaggctgaatg 129
Query: 514 cacagggcaaggacatcagcaaatcgggatagagattt 551
|| ||||||| | ||||||||| || || ||||||||
Sbjct: 128 cagagggcaataatatcagcaaagcgcgagagagattt 91
>gb|AW869910.1|AW869910 NXNV_122_H12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_122_H12 5' similar to Arabidopsis thaliana
sequence At4g22130 serine/threonine protein kinase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 573
Score = 63.9 bits (32), Expect = 3e-008
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 454 cgaaccaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctggaca 513
|||||||||||||||||||| || |||||||| || | ||||| ||||||||||| |
Sbjct: 494 cgaaccaatgcttgcaccacttcagacattggaggacggaattnnggttcaggctgaatg 435
Query: 514 cacagggcaaggacatcagcaaatcgggatagagattt 551
|| ||||||| | ||||||||| || || ||||||||
Sbjct: 434 cagagggcaataatatcagcaaagcgcgagagagattt 397
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 865 agcaaaatatttgacgacttgaaattcttatg 896
||||||||||| ||||||||||| || |||||
Sbjct: 80 agcaaaatattagacgacttgaattttttatg 49
>gb|DR389058.1|DR389058 RTHG1_32_D10.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_32_D10_A029 3', mRNA sequence
Length = 836
Score = 61.9 bits (31), Expect = 1e-007
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 454 cgaaccaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctggaca 513
|||||||| ||||||||||| || |||||||| || | |||||||| |||||||| |||
Sbjct: 154 cgaaccaaagcttgcaccacttcagacattggaggtcgaaattctggctcaggctgaaca 95
Query: 514 cacagggcaaggacatcagcaaa 536
|| ||||||| | |||||||||
Sbjct: 94 caaagggcaataatatcagcaaa 72
>gb|AW626677.1|AW626677 NXNV068C12 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV068C12 5' similar to Arabidopsis thaliana sequence
At4g22130 serine/threonine protein kinase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 370
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 472 acctctgacattggtggcctgaattctggttcaggctggacacacagggcaaggacatca 531
|||||||| ||||||||||| ||||| || || ||||||||||||| | | |||||||
Sbjct: 324 acctctgatattggtggcctaaattcaggctccggctggacacacaaagatatgacatca 265
Query: 532 gcaaatcg 539
||||||||
Sbjct: 264 gcaaatcg 257
>gb|BF517925.1|BF517925 NXSI_031_F12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_031_F12 5' similar to Arabidopsis thaliana
sequence At4g22130 serine/threonine protein kinase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 495
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 472 acctctgacattggtggcctgaattctggttcaggctggacacacagggcaaggacatca 531
|||||||| ||||||||||| ||||| || || ||||||||||||| | | |||||||
Sbjct: 400 acctctgatattggtggcctaaattcaggctccggctggacacacaaagatatgacatca 341
Query: 532 gcaaatcg 539
||||||||
Sbjct: 340 gcaaatcg 333
>gb|AW289775.1|AW289775 NXNV006A05F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006A05 5', mRNA sequence
Length = 240
Score = 52.0 bits (26), Expect = 1e-004
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 463 gcttgcaccacctctgacattggtggcctgaattctggttcaggctggacacacagggca 522
||||||||||| || |||||||| || | |||||||||||||||| | | || ||||||
Sbjct: 182 gcttgcaccacttcagacattggaggacggaattctggttcaggcngaatgcagagggca 123
Query: 523 aggacatcagcaaatcgggatagagattt 551
| | ||||||||| || || ||||||||
Sbjct: 122 ataatatcagcaaagcgcgagagagattt 94
>gb|BX250129.1|BX250129 BX250129 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP032G07, mRNA sequence
Length = 680
Score = 52.0 bits (26), Expect = 1e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 472 acctctgacattggtggcctgaattctggttcaggctggacacaca 517
|||||||| ||||||||||| ||||| || || |||||||||||||
Sbjct: 384 acctctgatattggtggcctaaattcaggctccggctggacacaca 339
>gb|CD028354.1|CD028354 NXNV006A05 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006A05 5' similar to Arabidopsis thaliana sequence
At1g53740 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 240
Score = 52.0 bits (26), Expect = 1e-004
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 463 gcttgcaccacctctgacattggtggcctgaattctggttcaggctggacacacagggca 522
||||||||||| || |||||||| || | |||||||||||||||| | | || ||||||
Sbjct: 182 gcttgcaccacttcagacattggaggacggaattctggttcaggcngaatgcagagggca 123
Query: 523 aggacatcagcaaatcgggatagagattt 551
| | ||||||||| || || ||||||||
Sbjct: 122 ataatatcagcaaagcgcgagagagattt 94
>gb|AW698159.1|AW698159 NXNV_074_A02_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_074_A02 5', mRNA sequence
Length = 206
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 454 cgaaccaatgcttgcaccacctctgacattgg 485
|||||||||||||||||||| || ||||||||
Sbjct: 34 cgaaccaatgcttgcaccacttcagacattgg 3
>gb|CO162520.1|CO162520 FLD1_35_G08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_35_G08_A029 5', mRNA sequence
Length = 874
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 685 gtcaatagttcaagcatgacaactccaaagctgtaaacatcact 728
|||||||| ||||| | ||||| ||||||||||||||||||||
Sbjct: 252 gtcaatagctcaaggaggacaatgccaaagctgtaaacatcact 295
>gb|CV032712.1|CV032712 RTNACL1_17_H06.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_17_H06_A029 5', mRNA sequence
Length = 768
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 685 gtcaatagttcaagcatgacaactccaaagctgtaaacatcact 728
|||||||| ||||| | ||||| ||||||||||||||||||||
Sbjct: 631 gtcaatagctcaaggaggacaatgccaaagctgtaaacatcact 674
>gb|CX652877.1|CX652877 COLD1_62_C06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_C06_A029 3', mRNA sequence
Length = 820
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 685 gtcaatagttcaagcatgacaactccaaagctgtaaacatcact 728
|||||||| ||||| | ||||| ||||||||||||||||||||
Sbjct: 193 gtcaatagctcaaggaggacaatgccaaagctgtaaacatcact 150
>gb|CX652963.1|CX652963 COLD1_62_C06.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_C06_A029 5', mRNA sequence
Length = 795
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 685 gtcaatagttcaagcatgacaactccaaagctgtaaacatcact 728
|||||||| ||||| | ||||| ||||||||||||||||||||
Sbjct: 683 gtcaatagctcaaggaggacaatgccaaagctgtaaacatcact 640
>gb|CX714166.1|CX714166 RTPQ1_18_E02.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_18_E02_A032 5', mRNA sequence
Length = 718
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 685 gtcaatagttcaagcatgacaactccaaagctgtaaacatcact 728
|||||||| ||||| | ||||| ||||||||||||||||||||
Sbjct: 589 gtcaatagctcaaggaggacaatgccaaagctgtaaacatcact 632
>gb|DR092366.1|DR092366 STRR1_1_A05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_A05_A033 3', mRNA sequence
Length = 739
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 685 gtcaatagttcaagcatgacaactccaaagctgtaaacatcact 728
|||||||| ||||| | ||||| ||||||||||||||||||||
Sbjct: 108 gtcaatagctcaaggaggacaatgccaaagctgtaaacatcact 65
>gb|DR092446.1|DR092446 STRR1_1_A05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_A05_A033 5', mRNA sequence
Length = 849
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 685 gtcaatagttcaagcatgacaactccaaagctgtaaacatcact 728
|||||||| ||||| | ||||| ||||||||||||||||||||
Sbjct: 274 gtcaatagctcaaggaggacaatgccaaagctgtaaacatcact 231
>gb|DR161873.1|DR161873 RTFE1_14_A03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_14_A03_A029 5', mRNA sequence
Length = 539
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 685 gtcaatagttcaagcatgacaactccaaagctgtaaacatcact 728
|||||||| ||||| | ||||| ||||||||||||||||||||
Sbjct: 204 gtcaatagctcaaggaggacaatgccaaagctgtaaacatcact 161
>gb|DR176904.1|DR176904 RTMNUT1_1_F02.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_1_F02_A029 5', mRNA sequence
Length = 508
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 685 gtcaatagttcaagcatgacaactccaaagctgtaaacatcact 728
|||||||| ||||| | ||||| ||||||||||||||||||||
Sbjct: 506 gtcaatagctcaaggaggacaatgccaaagctgtaaacatcact 463
>gb|AW043211.1|AW043211 ST30F05 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST30F05, mRNA sequence
Length = 596
Score = 42.1 bits (21), Expect = 0.11
Identities = 99/125 (79%)
Strand = Plus / Minus
Query: 607 tcatgcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagagctg 666
||||| ||||| || || ||||||| || || |||||||||||||| || || || |||
Sbjct: 138 tcatgaagctgaggagtagcccacctaactagagactgttctgaccttggccttgaactg 79
Query: 667 tcaaatggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatca 726
|||| ||| | || ||||||| ||||| | ||| || || ||||| ||||| ||||||
Sbjct: 78 tcaagtggctttcgacctgtcagaagttctaacattaccacaccaaaactgtatacatca 19
Query: 727 ctctt 731
|||||
Sbjct: 18 ctctt 14
>gb|BE643781.1|BE643781 NXCI_047_B08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_047_B08 5', mRNA sequence
Length = 340
Score = 40.1 bits (20), Expect = 0.45
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 472 acctctgacattggtggcctgaattctggttcaggctgga 511
|||||||| ||||||||||| ||||| || || |||||||
Sbjct: 40 acctctgatattggtggcctaaattcaggctccggctgga 1
>gb|BG040559.1|BG040559 NXSI_112_E09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_112_E09 5' similar to Arabidopsis thaliana
sequence At2g28930 protein kinase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 514
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 702 gacaactccaaagctgtaaacatcactcttga 733
|||||| ||||||||||| || ||||||||||
Sbjct: 431 gacaaccccaaagctgtacacgtcactcttga 400
>gb|CF390757.1|CF390757 RTDR2_17_F04.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_17_F04_A021 5', mRNA
sequence
Length = 818
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 865 agcaaaatatttgacgacttgaaattcttatg 896
||||||||||| ||||||||||| || |||||
Sbjct: 466 agcaaaatattagacgacttgaattttttatg 435
>gb|BX682640.1|BX682640 BX682640 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 119A09, mRNA sequence
Length = 395
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 708 tccaaagctgtaaacatcactctt 731
|||||||||||| |||||||||||
Sbjct: 370 tccaaagctgtatacatcactctt 347
>gb|CO161607.1|CO161607 FLD1_30_B03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_30_B03_A029 3', mRNA sequence
Length = 915
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 697 agcatgacaactccaaagctgtaaacatcact 728
|||| ||||||||||||||| || ||||||||
Sbjct: 97 agcaggacaactccaaagctatacacatcact 66
>gb|CO161683.1|CO161683 FLD1_30_B03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_30_B03_A029 5', mRNA sequence
Length = 872
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 697 agcatgacaactccaaagctgtaaacatcact 728
|||| ||||||||||||||| || ||||||||
Sbjct: 181 agcaggacaactccaaagctatacacatcact 150
>gb|CO172072.1|CO172072 NDL1_27_A05.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_27_A05_A029 3', mRNA sequence
Length = 735
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 705 aactccaaagctgtaaacatcact 728
||||||||||||||| ||||||||
Sbjct: 116 aactccaaagctgtagacatcact 93
>gb|CO172120.1|CO172120 NDL1_27_A05.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_27_A05_A029 5', mRNA sequence
Length = 507
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 705 aactccaaagctgtaaacatcact 728
||||||||||||||| ||||||||
Sbjct: 367 aactccaaagctgtagacatcact 344
>gb|CO201586.1|CO201586 RTCNT2_6_F08.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_6_F08_A029 5', mRNA sequence
Length = 829
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 708 tccaaagctgtaaacatcactctt 731
|||||||||||| |||||||||||
Sbjct: 320 tccaaagctgtagacatcactctt 297
>gb|CV035481.1|CV035481 RTNACL1_16_H10.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_16_H10_A029 3', mRNA sequence
Length = 723
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 697 agcatgacaactccaaagctgtaaacatcact 728
|||| ||||||||||||||| || ||||||||
Sbjct: 58 agcaggacaactccaaagctatacacatcact 27
>gb|CV035564.1|CV035564 RTNACL1_16_H10.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_16_H10_A029 5', mRNA sequence
Length = 746
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 697 agcatgacaactccaaagctgtaaacatcact 728
|||| ||||||||||||||| || ||||||||
Sbjct: 469 agcaggacaactccaaagctatacacatcact 438
>gb|DR015117.1|DR015117 STRS1_1_D02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_1_D02_A034 5', mRNA sequence
Length = 860
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 697 agcatgacaactccaaagctgtaaacatcact 728
|||| ||||||||||||||| || ||||||||
Sbjct: 212 agcaggacaactccaaagctatacacatcact 181
>gb|DR018275.1|DR018275 STRS1_21_E09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_21_E09_A034 5', mRNA sequence
Length = 698
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 865 agcaaaatatttgacgacttgaaattcttatg 896
||||||||||| ||||||||||| || |||||
Sbjct: 451 agcaaaatattagacgacttgaattttttatg 420
>gb|DR025437.1|DR025437 STRS1_71_D02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_71_D02_A034 5', mRNA sequence
Length = 783
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 865 agcaaaatatttgacgacttgaaattcttatg 896
||||||||||| ||||||||||| || |||||
Sbjct: 491 agcaaaatattagacgacttgaattttttatg 460
>gb|DR058281.1|DR058281 RTNIT1_10_H03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_10_H03_A029 5', mRNA sequence
Length = 725
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 708 tccaaagctgtaaacatcactctt 731
|||||||||||| |||||||||||
Sbjct: 163 tccaaagctgtagacatcactctt 140
>gb|DR068516.1|DR068516 RTDK1_1_G01.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_1_G01_A029 3', mRNA sequence
Length = 698
Score = 40.1 bits (20), Expect = 0.45
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 708 tccaaagctgtaaacatcac 727
||||||||||||||||||||
Sbjct: 38 tccaaagctgtaaacatcac 19
>gb|DR090764.1|DR090764 RTAL1_17_E12.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_17_E12_A029 3', mRNA sequence
Length = 813
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 697 agcatgacaactccaaagctgtaaacatcact 728
|||| ||||||||||||||| || ||||||||
Sbjct: 535 agcaggacaactccaaagctatacacatcact 566
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 358,706
Number of Sequences: 355925
Number of extensions: 358706
Number of successful extensions: 105251
Number of sequences better than 0.5: 65
Number of HSP's better than 0.5 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105110
Number of HSP's gapped (non-prelim): 134
length of query: 2639
length of database: 217,277,237
effective HSP length: 20
effective length of query: 2619
effective length of database: 210,158,737
effective search space: 550405732203
effective search space used: 550405732203
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)