BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2921788.2.1
         (606 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AW042951.1|AW042951  ST27E02 Pine TriplEx shoot tip libra...    38   0.40 
gb|DR097631.1|DR097631  STRR1_36_B04.b1_A033 Stem Response R...    38   0.40 
gb|DR098092.1|DR098092  STRR1_39_C02.b1_A033 Stem Response R...    38   0.40 

>gb|AW042951.1|AW042951 ST27E02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
           ST27E02, mRNA sequence
          Length = 519

 Score = 38.2 bits (19), Expect = 0.40
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 203 aaaggcggcggcgggtggc 221
           |||||||||||||||||||
Sbjct: 293 aaaggcggcggcgggtggc 311



>gb|DR097631.1|DR097631 STRR1_36_B04.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
           STRR1_36_B04_A033 3', mRNA sequence
          Length = 804

 Score = 38.2 bits (19), Expect = 0.40
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 431 ggaagagaatttgttctga 449
           |||||||||||||||||||
Sbjct: 124 ggaagagaatttgttctga 142



>gb|DR098092.1|DR098092 STRR1_39_C02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
           STRR1_39_C02_A033 3', mRNA sequence
          Length = 688

 Score = 38.2 bits (19), Expect = 0.40
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 194 cggagatgaaaaggcggcg 212
           |||||||||||||||||||
Sbjct: 536 cggagatgaaaaggcggcg 518



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71,788
Number of Sequences: 355925
Number of extensions: 71788
Number of successful extensions: 17269
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17266
Number of HSP's gapped (non-prelim): 3
length of query: 606
length of database: 217,277,237
effective HSP length: 19
effective length of query: 587
effective length of database: 210,514,662
effective search space: 123572106594
effective search space used: 123572106594
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)