BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2762998.2.1
(1036 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI812586.1|AI812586 13F10 Pine Lambda Zap Xylem library ... 40 0.18
gb|BE662353.1|BE662353 ST62/ST62C10 Pine TriplEx shoot tip ... 40 0.18
gb|CO363274.1|CO363274 RTK1_8_E09.g1_A029 Roots minus potas... 40 0.18
gb|CO363793.1|CO363793 RTK1_11_G09.g1_A029 Roots minus pota... 40 0.18
gb|DN609073.1|DN609073 EST962123 Subtracted pine embryo lib... 40 0.18
gb|DR013291.1|DR013291 HEAT1_18_H09.b1_A029 Root at 37 C fo... 40 0.18
gb|DR013367.1|DR013367 HEAT1_18_H09.g1_A029 Root at 37 C fo... 40 0.18
gb|DR688621.1|DR688621 EST1078706 Normalized pine embryo li... 40 0.18
gb|DR742500.1|DR742500 RTCU1_4_A06.g1_A029 Roots plus added... 40 0.18
gb|DT627635.1|DT627635 EST1156384 Subtracted pine embryo li... 40 0.18
>gb|AI812586.1|AI812586 13F10 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 634
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 305 tggccttcattcagattgtcagggatccatcc 336
||||||||||||| ||| ||||| ||||||||
Sbjct: 292 tggccttcattcaaattatcaggtatccatcc 261
>gb|BE662353.1|BE662353 ST62/ST62C10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST62/ST62C10, mRNA sequence
Length = 374
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 305 tggccttcattcagattgtcagggatccatcc 336
||||||||||||| ||| ||||| ||||||||
Sbjct: 41 tggccttcattcaaattatcaggtatccatcc 10
>gb|CO363274.1|CO363274 RTK1_8_E09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_8_E09_A029 5', mRNA sequence
Length = 703
Score = 40.1 bits (20), Expect = 0.18
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 440 ctcctcatggcatctggggcctgatcgtaaaagaactcaa 479
||||||||||| ||||| | ||| || |||||||||||||
Sbjct: 442 ctcctcatggcgtctggtgactggtcataaaagaactcaa 481
>gb|CO363793.1|CO363793 RTK1_11_G09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_11_G09_A029 5', mRNA sequence
Length = 710
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 305 tggccttcattcagattgtcagggatccatcc 336
||||||||||||| ||| ||||| ||||||||
Sbjct: 313 tggccttcattcaaattatcaggtatccatcc 344
>gb|DN609073.1|DN609073 EST962123 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAA819, mRNA sequence
Length = 373
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 305 tggccttcattcagattgtcagggatccatcc 336
||||||||||||| ||| ||||| ||||||||
Sbjct: 220 tggccttcattcaaattatcaggtatccatcc 189
>gb|DR013291.1|DR013291 HEAT1_18_H09.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_18_H09_A029 3', mRNA sequence
Length = 703
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 305 tggccttcattcagattgtcagggatccatcc 336
||||||||||||| ||| ||||| ||||||||
Sbjct: 102 tggccttcattcaaattatcaggtatccatcc 71
>gb|DR013367.1|DR013367 HEAT1_18_H09.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_18_H09_A029 5', mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 305 tggccttcattcagattgtcagggatccatcc 336
||||||||||||| ||| ||||| ||||||||
Sbjct: 415 tggccttcattcaaattatcaggtatccatcc 384
>gb|DR688621.1|DR688621 EST1078706 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC846 3' end, mRNA sequence
Length = 524
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 305 tggccttcattcagattgtcagggatccatcc 336
||||||||||||| ||| ||||| ||||||||
Sbjct: 439 tggccttcattcaaattatcaggtatccatcc 408
>gb|DR742500.1|DR742500 RTCU1_4_A06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_4_A06_A029 5', mRNA sequence
Length = 814
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 305 tggccttcattcagattgtcagggatccatcc 336
||||||||||||| ||| ||||| ||||||||
Sbjct: 333 tggccttcattcaaattatcaggtatccatcc 364
>gb|DT627635.1|DT627635 EST1156384 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCO85 5' end, mRNA sequence
Length = 373
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 305 tggccttcattcagattgtcagggatccatcc 336
||||||||||||| ||| ||||| ||||||||
Sbjct: 154 tggccttcattcaaattatcaggtatccatcc 185
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 97,586
Number of Sequences: 355925
Number of extensions: 97586
Number of successful extensions: 24314
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24291
Number of HSP's gapped (non-prelim): 23
length of query: 1036
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1017
effective length of database: 210,514,662
effective search space: 214093411254
effective search space used: 214093411254
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)