BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2751069.2.1
(940 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF609770.1|BF609770 NXSI_050_B12_F NXSI (Nsf Xylem Side ... 48 7e-004
gb|DR168796.1|DR168796 RTPHOS1_27_H08.g1_A029 Roots minus p... 48 7e-004
gb|CO165848.1|CO165848 FLD1_57_B08.g1_A029 Root flooded Pin... 44 0.010
gb|DR384908.1|DR384908 RTHG1_5_H11.b1_A029 Roots plus added... 44 0.010
gb|BX250784.1|BX250784 BX250784 Pinus pinaster differenciat... 42 0.041
gb|BF777533.1|BF777533 NXSI_069_F09_F NXSI (Nsf Xylem Side ... 42 0.041
gb|CF396022.1|CF396022 RTDS2_20_H10.g1_A021 Drought-stresse... 42 0.041
gb|CO164509.1|CO164509 FLD1_48_A12.g1_A029 Root flooded Pin... 42 0.041
gb|DR180787.1|DR180787 RTMNUT1_34_G11.g1_A029 Roots minus m... 42 0.041
>gb|BF609770.1|BF609770 NXSI_050_B12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_050_B12 5' similar to Arabidopsis thaliana
sequence At1g52150 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 546
Score = 48.1 bits (24), Expect = 7e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 66 tatcaagtggtatgacacgaaagccaga 93
|||| |||||||||||||||||||||||
Sbjct: 301 tatctagtggtatgacacgaaagccaga 274
>gb|DR168796.1|DR168796 RTPHOS1_27_H08.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_27_H08_A029 5', mRNA sequence
Length = 617
Score = 48.1 bits (24), Expect = 7e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 66 tatcaagtggtatgacacgaaagccaga 93
|||| |||||||||||||||||||||||
Sbjct: 147 tatctagtggtatgacacgaaagccaga 120
>gb|CO165848.1|CO165848 FLD1_57_B08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_B08_A029 5', mRNA sequence
Length = 895
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 806 agcacttcaggaacactccatg 827
||||||||||||||||||||||
Sbjct: 874 agcacttcaggaacactccatg 853
>gb|DR384908.1|DR384908 RTHG1_5_H11.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_5_H11_A029 3', mRNA sequence
Length = 845
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 806 agcacttcaggaacactccatg 827
||||||||||||||||||||||
Sbjct: 648 agcacttcaggaacactccatg 669
>gb|BX250784.1|BX250784 BX250784 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP041C02, mRNA sequence
Length = 653
Score = 42.1 bits (21), Expect = 0.041
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 761 gtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcaggaaca 820
||||||||||| |||| ||| | || || |||||||||||||| | || ||||| |||
Sbjct: 399 gtcattttctgggcaagtacagtggacgattcatatagtggtcgtaaaacctcaggcaca 340
Query: 821 ctccatgcctcgagatc 837
||||||| ||| |||||
Sbjct: 339 ctccatggctctagatc 323
>gb|BF777533.1|BF777533 NXSI_069_F09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_069_F09 5' similar to Arabidopsis thaliana
sequence At4g32880 HD-zip transcription factor (athb-8)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 426
Score = 42.1 bits (21), Expect = 0.041
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 761 gtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcaggaaca 820
||||||||||| |||| ||| | || || |||||||||||||| | || ||||| |||
Sbjct: 323 gtcattttctgggcaagtacagtggacgattcatatagtggtcgtaaaacctcaggcaca 264
Query: 821 ctccatgcctcgagatc 837
||||||| ||| |||||
Sbjct: 263 ctccatggctctagatc 247
>gb|CF396022.1|CF396022 RTDS2_20_H10.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_20_H10_A021 5', mRNA sequence
Length = 662
Score = 42.1 bits (21), Expect = 0.041
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 126 catcaattggtgcaaacacaagctg 150
|||||| ||||||||||||||||||
Sbjct: 63 catcaactggtgcaaacacaagctg 39
>gb|CO164509.1|CO164509 FLD1_48_A12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_48_A12_A029 5', mRNA sequence
Length = 859
Score = 42.1 bits (21), Expect = 0.041
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 126 catcaattggtgcaaacacaagctg 150
|||||| ||||||||||||||||||
Sbjct: 145 catcaactggtgcaaacacaagctg 121
>gb|DR180787.1|DR180787 RTMNUT1_34_G11.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_34_G11_A029 5', mRNA sequence
Length = 480
Score = 42.1 bits (21), Expect = 0.041
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 126 catcaattggtgcaaacacaagctg 150
|||||| ||||||||||||||||||
Sbjct: 355 catcaactggtgcaaacacaagctg 331
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 119,245
Number of Sequences: 355925
Number of extensions: 119245
Number of successful extensions: 37749
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37736
Number of HSP's gapped (non-prelim): 13
length of query: 940
length of database: 217,277,237
effective HSP length: 19
effective length of query: 921
effective length of database: 210,514,662
effective search space: 193884003702
effective search space used: 193884003702
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)