BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750912.2.1
(1095 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN612931.1|DN612931 EST965981 Subtracted pine embryo lib... 98 9e-019
gb|DT628876.1|DT628876 EST1155446 Subtracted pine embryo li... 98 9e-019
gb|BG317475.1|BG317475 NXPV_002_C11_F NXPV (Nsf Xylem Plani... 94 1e-017
gb|CD023254.1|CD023254 NXPV_104_C10_F NXPV (Nsf Xylem Plani... 94 1e-017
gb|BX250119.1|BX250119 BX250119 Pinus pinaster differenciat... 50 2e-004
gb|CF475216.1|CF475216 RTWW2_14_B05.g1_A021 Well-watered lo... 40 0.19
gb|CO363884.1|CO363884 RTK1_12_H11.b1_A029 Roots minus pota... 40 0.19
gb|CO363978.1|CO363978 RTK1_12_H11.g1_A029 Roots minus pota... 40 0.19
gb|CX714271.1|CX714271 RTPQ1_20_C06.b1_A032 Roots treated w... 40 0.19
gb|DR162759.1|DR162759 RTFE1_20_E10.b1_A029 Roots minus iro... 40 0.19
gb|DR180737.1|DR180737 RTMNUT1_34_B08.g1_A029 Roots minus m... 40 0.19
gb|DR742487.1|DR742487 RTCU1_4_G10.b1_A029 Roots plus added... 40 0.19
>gb|DN612931.1|DN612931 EST965981 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABL95, mRNA sequence
Length = 596
Score = 97.6 bits (49), Expect = 9e-019
Identities = 130/157 (82%)
Strand = Plus / Minus
Query: 272 ccatgttcactgtctactacaagcctaggacgagcccttcagagtttatcattccatatg 331
||||||| | |||||| || || || ||||| ||||| |||||||| || ||||| ||||
Sbjct: 226 ccatgtttagtgtctattataaaccaaggacaagcccatcagagttcataattccttatg 167
Query: 332 atcaatatatggagtcagtaaaaaacaattattctattgggatgagattcaggatgaggt 391
||||||||||||||||| | |||| ||||| || |||| |||||||||| ||||| ||
Sbjct: 166 atcaatatatggagtcaatgaaaatcaatttctcggttggaatgagattcaagatgaagt 107
Query: 392 ttgaaggggaagaggcccccgagcagaggtttactgg 428
|||| |||||||| | ||| ||||| || ||||||||
Sbjct: 106 ttgagggggaagaagtcccagagcaaagatttactgg 70
>gb|DT628876.1|DT628876 EST1155446 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD303 5' end, mRNA sequence
Length = 596
Score = 97.6 bits (49), Expect = 9e-019
Identities = 130/157 (82%)
Strand = Plus / Plus
Query: 272 ccatgttcactgtctactacaagcctaggacgagcccttcagagtttatcattccatatg 331
||||||| | |||||| || || || ||||| ||||| |||||||| || ||||| ||||
Sbjct: 371 ccatgtttagtgtctattataaaccaaggacaagcccatcagagttcataattccttatg 430
Query: 332 atcaatatatggagtcagtaaaaaacaattattctattgggatgagattcaggatgaggt 391
||||||||||||||||| | |||| ||||| || |||| |||||||||| ||||| ||
Sbjct: 431 atcaatatatggagtcaatgaaaatcaatttctcggttggaatgagattcaagatgaagt 490
Query: 392 ttgaaggggaagaggcccccgagcagaggtttactgg 428
|||| |||||||| | ||| ||||| || ||||||||
Sbjct: 491 ttgagggggaagaagtcccagagcaaagatttactgg 527
>gb|BG317475.1|BG317475 NXPV_002_C11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_002_C11 5' similar to Arabidopsis
thaliana sequence At5g62000 auxin response factor - like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 261
Score = 93.7 bits (47), Expect = 1e-017
Identities = 110/131 (83%)
Strand = Plus / Plus
Query: 298 aggacgagcccttcagagtttatcattccatatgatcaatatatggagtcagtaaaaaac 357
||||| ||||| |||||||| || ||||| ||||||||||||||||||||| | |||| |
Sbjct: 7 aggacaagcccatcagagttcataattccttatgatcaatatatggagtcaatgaaaatc 66
Query: 358 aattattctattgggatgagattcaggatgaggtttgaaggggaagaggcccccgagcag 417
|||| || |||| |||||||||| ||||| |||||| |||||||| | ||| |||||
Sbjct: 67 aatttctcggttggaatgagattcaagatgaagtttgagggggaagaagtcccagagcaa 126
Query: 418 aggtttactgg 428
|| ||||||||
Sbjct: 127 agatttactgg 137
>gb|CD023254.1|CD023254 NXPV_104_C10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_104_C10 5' similar to Arabidopsis
thaliana sequence At5g62000 auxin response factor - like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 189
Score = 93.7 bits (47), Expect = 1e-017
Identities = 110/131 (83%)
Strand = Plus / Plus
Query: 298 aggacgagcccttcagagtttatcattccatatgatcaatatatggagtcagtaaaaaac 357
||||| ||||| |||||||| || ||||| ||||||||||||||||||||| | |||| |
Sbjct: 7 aggacaagcccatcagagttcataattccttatgatcaatatatggagtcaatgaaaatc 66
Query: 358 aattattctattgggatgagattcaggatgaggtttgaaggggaagaggcccccgagcag 417
|||| || |||| |||||||||| ||||| |||||| |||||||| | ||| |||||
Sbjct: 67 aatttctcggttggaatgagattcaagatgaagtttgagggggaagaagtcccagagcaa 126
Query: 418 aggtttactgg 428
|| ||||||||
Sbjct: 127 agatttactgg 137
>gb|BX250119.1|BX250119 BX250119 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP032F08, mRNA sequence
Length = 674
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgctggaga 116
|||||||| ||||| |||| |||||||||||| ||||||||
Sbjct: 190 tggagtgtctttgttagttacaaaaggcttgtagctggaga 230
Score = 42.1 bits (21), Expect = 0.047
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 286 tactacaagcctaggacgagcccttcagagtttatcattccatat 330
|||||||| || |||||||||||| |||| ||| | |||||||||
Sbjct: 400 tactacaatccaaggacgagccctacagaatttgtgattccatat 444
>gb|CF475216.1|CF475216 RTWW2_14_B05.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_14_B05_A021 5', mRNA sequence
Length = 677
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 cagttccaaaaggcttgttg 109
||||||||||||||||||||
Sbjct: 58 cagttccaaaaggcttgttg 77
>gb|CO363884.1|CO363884 RTK1_12_H11.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_H11_A029 3', mRNA sequence
Length = 783
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 90 cagttccaaaaggcttgttg 109
||||||||||||||||||||
Sbjct: 644 cagttccaaaaggcttgttg 625
>gb|CO363978.1|CO363978 RTK1_12_H11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_H11_A029 5', mRNA sequence
Length = 769
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 90 cagttccaaaaggcttgttg 109
||||||||||||||||||||
Sbjct: 746 cagttccaaaaggcttgttg 727
>gb|CX714271.1|CX714271 RTPQ1_20_C06.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_20_C06_A032 3', mRNA sequence
Length = 338
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 90 cagttccaaaaggcttgttg 109
||||||||||||||||||||
Sbjct: 217 cagttccaaaaggcttgttg 198
>gb|DR162759.1|DR162759 RTFE1_20_E10.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_20_E10_A029 3', mRNA sequence
Length = 555
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 90 cagttccaaaaggcttgttg 109
||||||||||||||||||||
Sbjct: 461 cagttccaaaaggcttgttg 442
>gb|DR180737.1|DR180737 RTMNUT1_34_B08.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_34_B08_A029 5', mRNA sequence
Length = 690
Score = 40.1 bits (20), Expect = 0.19
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 391 tttgaaggggaagaggcccccgagcagaggtttactggtacaat 434
|||||||| |||||| | || || | ||||||||||||||||||
Sbjct: 8 tttgaaggagaagagtctcctgaacggaggtttactggtacaat 51
>gb|DR742487.1|DR742487 RTCU1_4_G10.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_4_G10_A029 3', mRNA sequence
Length = 515
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 90 cagttccaaaaggcttgttg 109
||||||||||||||||||||
Sbjct: 409 cagttccaaaaggcttgttg 390
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 105,642
Number of Sequences: 355925
Number of extensions: 105642
Number of successful extensions: 30242
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30225
Number of HSP's gapped (non-prelim): 17
length of query: 1095
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1076
effective length of database: 210,514,662
effective search space: 226513776312
effective search space used: 226513776312
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)