BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750753.2.1
(1126 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN612931.1|DN612931 EST965981 Subtracted pine embryo lib... 76 3e-012
gb|DT628876.1|DT628876 EST1155446 Subtracted pine embryo li... 76 3e-012
gb|DR054271.1|DR054271 RTCA1_16_G04.b1_A029 Roots minus cal... 74 1e-011
>gb|DN612931.1|DN612931 EST965981 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABL95, mRNA sequence
Length = 596
Score = 75.8 bits (38), Expect = 3e-012
Identities = 155/194 (79%)
Strand = Plus / Minus
Query: 302 ggagatgccttcatctttctaagaggtgatagtggggagcttcgtgtaggagtcaggcgt 361
|||||||| || |||||| | || ||||| | ||| || || ||||| ||||| ||||||
Sbjct: 386 ggagatgcatttatctttttgaggggtgaaaatggtgaactgcgtgtgggagttaggcgt 327
Query: 362 gccatgaggcagcaagcaaatgttccatcttcagtaatatcaagccacagcatgcatctt 421
|||||| | |||||| ||||||||||| || || ||||| || |||||||||||||||
Sbjct: 326 gccatgcgccagcaaaacaatgttccatcatctgttatatccagtcacagcatgcatctt 267
Query: 422 ggtgttcttgctacagcatggcatgctgttaacactgggaccatgtttactgtctactac 481
||||| |||| || |||| ||||| |||| || ||||||||||| |||||| ||
Sbjct: 266 ggtgtcattgcaactgcatcacatgcagttacaacgaagaccatgtttagtgtctattat 207
Query: 482 aagcctaggacaag 495
|| || ||||||||
Sbjct: 206 aaaccaaggacaag 193
>gb|DT628876.1|DT628876 EST1155446 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD303 5' end, mRNA sequence
Length = 596
Score = 75.8 bits (38), Expect = 3e-012
Identities = 155/194 (79%)
Strand = Plus / Plus
Query: 302 ggagatgccttcatctttctaagaggtgatagtggggagcttcgtgtaggagtcaggcgt 361
|||||||| || |||||| | || ||||| | ||| || || ||||| ||||| ||||||
Sbjct: 211 ggagatgcatttatctttttgaggggtgaaaatggtgaactgcgtgtgggagttaggcgt 270
Query: 362 gccatgaggcagcaagcaaatgttccatcttcagtaatatcaagccacagcatgcatctt 421
|||||| | |||||| ||||||||||| || || ||||| || |||||||||||||||
Sbjct: 271 gccatgcgccagcaaaacaatgttccatcatctgttatatccagtcacagcatgcatctt 330
Query: 422 ggtgttcttgctacagcatggcatgctgttaacactgggaccatgtttactgtctactac 481
||||| |||| || |||| ||||| |||| || ||||||||||| |||||| ||
Sbjct: 331 ggtgtcattgcaactgcatcacatgcagttacaacgaagaccatgtttagtgtctattat 390
Query: 482 aagcctaggacaag 495
|| || ||||||||
Sbjct: 391 aaaccaaggacaag 404
>gb|DR054271.1|DR054271 RTCA1_16_G04.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_16_G04_A029 3', mRNA sequence
Length = 631
Score = 73.8 bits (37), Expect = 1e-011
Identities = 103/125 (82%)
Strand = Plus / Plus
Query: 302 ggagatgccttcatctttctaagaggtgatagtggggagcttcgtgtaggagtcaggcgt 361
|||||||| || |||||| | || ||||| | ||| || || ||||| ||||| ||||||
Sbjct: 65 ggagatgcatttatctttttgaggggtgaaaatggtgaactgcgtgtgggagttaggcgt 124
Query: 362 gccatgaggcagcaagcaaatgttccatcttcagtaatatcaagccacagcatgcatctt 421
|||||| | |||||| ||||||||||| || || ||||| || |||||||||||||||
Sbjct: 125 gccatgcgccagcaaaacaatgttccatcatctgttatatccagtcacagcatgcatctt 184
Query: 422 ggtgt 426
|||||
Sbjct: 185 ggtgt 189
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 131,391
Number of Sequences: 355925
Number of extensions: 131391
Number of successful extensions: 34083
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34072
Number of HSP's gapped (non-prelim): 9
length of query: 1126
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1107
effective length of database: 210,514,662
effective search space: 233039730834
effective search space used: 233039730834
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)