BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750560.2.1
(660 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF386566.1|CF386566 RTDR1_15_D11.b1_A015 Loblolly pine r... 64 8e-009
gb|CF386596.1|CF386596 RTDR1_15_D11.g1_A015 Loblolly pine r... 64 8e-009
>gb|CF386566.1|CF386566 RTDR1_15_D11.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_15_D11_A015 3', mRNA
sequence
Length = 419
Score = 63.9 bits (32), Expect = 8e-009
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgtcc 639
|||| ||||||||||| | ||||||||||||||||| || || || || ||||| || |
Sbjct: 282 attcgttctgcaagactcttactgcttcagatacaagcactcacgggggcttctccgttc 223
Query: 640 tcaggaggcatgctga 655
||||||||||||||||
Sbjct: 222 tcaggaggcatgctga 207
>gb|CF386596.1|CF386596 RTDR1_15_D11.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_15_D11_A015 5', mRNA
sequence
Length = 763
Score = 63.9 bits (32), Expect = 8e-009
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgtcc 639
|||| ||||||||||| | ||||||||||||||||| || || || || ||||| || |
Sbjct: 666 attcgttctgcaagactcttactgcttcagatacaagcactcacgggggcttctccgttc 725
Query: 640 tcaggaggcatgctga 655
||||||||||||||||
Sbjct: 726 tcaggaggcatgctga 741
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 85,713
Number of Sequences: 355925
Number of extensions: 85713
Number of successful extensions: 32346
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32343
Number of HSP's gapped (non-prelim): 3
length of query: 660
length of database: 217,277,237
effective HSP length: 19
effective length of query: 641
effective length of database: 210,514,662
effective search space: 134939898342
effective search space used: 134939898342
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)