BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2655972.2.1
         (666 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CF396446.1|CF396446  RTDS2_22_H09.b1_A021 Drought-stresse...    46   0.002
gb|DR180365.1|DR180365  RTMNUT1_28_D11.b1_A029 Roots minus m...    40   0.11 

>gb|CF396446.1|CF396446 RTDS2_22_H09.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
           taeda cDNA clone RTDS2_22_H09_A021 3', mRNA sequence
          Length = 638

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                      
Query: 39  ttctgttcttttttggctgtagaaaccaagaaaacgattttctatacaaggatttctgg 97
           |||| ||||| ||||||||||||||  ||   || |||||||||||||| |||||||||
Sbjct: 99  ttcttttcttctttggctgtagaaatgaaaccaaagattttctatacaaagatttctgg 157



>gb|DR180365.1|DR180365 RTMNUT1_28_D11.b1_A029 Roots minus micronutrients Pinus taeda cDNA
           clone RTMNUT1_28_D11_A029 3', mRNA sequence
          Length = 830

 Score = 40.1 bits (20), Expect = 0.11
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 431 tacatattatttatgtttgctgaa 454
           |||||||| |||||||||||||||
Sbjct: 767 tacatattgtttatgtttgctgaa 744



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71,829
Number of Sequences: 355925
Number of extensions: 71829
Number of successful extensions: 17907
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17903
Number of HSP's gapped (non-prelim): 3
length of query: 666
length of database: 217,277,237
effective HSP length: 19
effective length of query: 647
effective length of database: 210,514,662
effective search space: 136202986314
effective search space used: 136202986314
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)