BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2647917.2.1
         (3189 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CX652228.1|CX652228  COLD1_57_F08.g1_A029 Root cold Pinus...    48   0.002
gb|CX652677.1|CX652677  COLD1_60_F07.g1_A029 Root cold Pinus...    48   0.002
gb|CF398449.1|CF398449  RTDS3_12_E10.g1_A022 Drought-stresse...    46   0.009
gb|CF471819.1|CF471819  RTDS1_6_A09.g1_A015 Drought-stressed...    46   0.009
gb|CF474781.1|CF474781  RTWW2_7_H01.g1_A021 Well-watered lob...    46   0.009
gb|CF667809.1|CF667809  RTCNT1_32_D10.g1_A029 Root control P...    46   0.009
gb|DR094240.1|DR094240  STRR1_13_G11.b1_A033 Stem Response R...    44   0.035

>gb|CX652228.1|CX652228 COLD1_57_F08.g1_A029 Root cold Pinus taeda cDNA clone
           COLD1_57_F08_A029 5', mRNA sequence
          Length = 326

 Score = 48.1 bits (24), Expect = 0.002
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 932 agaacaaccccgaagctgtagacatcagattt 963
           ||||| |||||||||||||||||||| |||||
Sbjct: 235 agaacgaccccgaagctgtagacatcggattt 204



>gb|CX652677.1|CX652677 COLD1_60_F07.g1_A029 Root cold Pinus taeda cDNA clone
           COLD1_60_F07_A029 5', mRNA sequence
          Length = 579

 Score = 48.1 bits (24), Expect = 0.002
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 932 agaacaaccccgaagctgtagacatcagattt 963
           ||||| |||||||||||||||||||| |||||
Sbjct: 276 agaacgaccccgaagctgtagacatcggattt 245



>gb|CF398449.1|CF398449 RTDS3_12_E10.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
           taeda cDNA clone RTDS3_12_E10_A022 5', mRNA sequence
          Length = 581

 Score = 46.1 bits (23), Expect = 0.009
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 926 tccaggagaacaaccccgaagctgtagacatcagatttt 964
           |||||||||||||| || ||||| |||||||||| ||||
Sbjct: 497 tccaggagaacaacgccaaagctatagacatcagctttt 459



>gb|CF471819.1|CF471819 RTDS1_6_A09.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
            taeda cDNA clone RTDS1_6_A09_A015 5', mRNA sequence
          Length = 732

 Score = 46.1 bits (23), Expect = 0.009
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 1276 tccatgagccatgaactcataaaccaa 1302
            |||| ||||||||||||||||||||||
Sbjct: 189  tccacgagccatgaactcataaaccaa 163



>gb|CF474781.1|CF474781 RTWW2_7_H01.g1_A021 Well-watered loblolly pine roots WW2 Pinus
           taeda cDNA clone RTWW2_7_H01_A021 5', mRNA sequence
          Length = 575

 Score = 46.1 bits (23), Expect = 0.009
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 926 tccaggagaacaaccccgaagctgtagacatcagatttt 964
           |||||||||||||| || ||||| |||||||||| ||||
Sbjct: 464 tccaggagaacaacgccaaagctatagacatcagctttt 426



>gb|CF667809.1|CF667809 RTCNT1_32_D10.g1_A029 Root control Pinus taeda cDNA clone
            RTCNT1_32_D10_A029 5', mRNA sequence
          Length = 813

 Score = 46.1 bits (23), Expect = 0.009
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 1276 tccatgagccatgaactcataaaccaa 1302
            |||| ||||||||||||||||||||||
Sbjct: 175  tccacgagccatgaactcataaaccaa 149



>gb|DR094240.1|DR094240 STRR1_13_G11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
           STRR1_13_G11_A033 3', mRNA sequence
          Length = 766

 Score = 44.1 bits (22), Expect = 0.035
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 934 aacaaccccgaagctgtagacatcagattt 963
           ||||||||| |||||||||||||| |||||
Sbjct: 135 aacaaccccaaagctgtagacatcggattt 164



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 334,311
Number of Sequences: 355925
Number of extensions: 334311
Number of successful extensions: 92679
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92665
Number of HSP's gapped (non-prelim): 14
length of query: 3189
length of database: 217,277,237
effective HSP length: 20
effective length of query: 3169
effective length of database: 210,158,737
effective search space: 665993037553
effective search space used: 665993037553
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)