BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643622.2.1
(1067 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW056850.1|AW056850 ST57B04 Pine TriplEx shoot tip libra... 42 0.046
gb|CF386135.1|CF386135 RTDR1_8_E10.g1_A015 Loblolly pine ro... 42 0.046
gb|CF387703.1|CF387703 RTDR1_19_C11.g1_A015 Loblolly pine r... 42 0.046
gb|CF388973.1|CF388973 RTDR2_16_D05.g1_A021 Loblolly pine r... 42 0.046
gb|CF390685.1|CF390685 RTDR2_20_D05.g1_A021 Loblolly pine r... 42 0.046
gb|CF394868.1|CF394868 RTDS2_8_H11.b1_A021 Drought-stressed... 42 0.046
gb|CF394958.1|CF394958 RTDS2_8_H11.g1_A021 Drought-stressed... 42 0.046
gb|CF477876.1|CF477876 RTWW3_13_A04.g1_A022 Well-watered lo... 42 0.046
gb|CF664646.1|CF664646 RTCNT1_11_D06.b1_A029 Root control P... 42 0.046
gb|CF672937.1|CF672937 RTCNT1_75_A10.b1_A029 Root control P... 42 0.046
gb|CF673013.1|CF673013 RTCNT1_75_A10.g1_A029 Root control P... 42 0.046
gb|CO172749.1|CO172749 NDL1_31_D07.g1_A029 Needles control ... 42 0.046
gb|CV033403.1|CV033403 RTNACL1_34_G06.b1_A029 Roots plus ad... 42 0.046
gb|CV033413.1|CV033413 RTNACL1_34_H08.b1_A029 Roots plus ad... 42 0.046
gb|CV033500.1|CV033500 RTNACL1_34_H08.g1_A029 Roots plus ad... 42 0.046
gb|CV036172.1|CV036172 RTNACL1_57_E12.b1_A029 Roots plus ad... 42 0.046
gb|CV036239.1|CV036239 RTNACL1_57_E12.g1_A029 Roots plus ad... 42 0.046
gb|CV135378.1|CV135378 EST846587 Sequencing ESTs from loblo... 42 0.046
gb|CX650345.1|CX650345 COLD1_45_C03.b1_A029 Root cold Pinus... 42 0.046
gb|CX650419.1|CX650419 COLD1_45_C03.g1_A029 Root cold Pinus... 42 0.046
gb|CX715775.1|CX715775 RTPQ1_36_A08.g1_A032 Roots treated w... 42 0.046
gb|DN460749.1|DN460749 EST956548 Sequencing ESTs from loblo... 42 0.046
gb|DR012954.1|DR012954 HEAT1_16_C09.b1_A029 Root at 37 C fo... 42 0.046
gb|DR013036.1|DR013036 HEAT1_16_C09.g1_A029 Root at 37 C fo... 42 0.046
gb|DR025160.1|DR025160 STRS1_70_A08.b1_A034 Shoot tip pitch... 42 0.046
gb|DR025238.1|DR025238 STRS1_70_A08.g1_A034 Shoot tip pitch... 42 0.046
gb|DR050330.1|DR050330 RTBOR1_22_F04.g1_A029 Roots plus add... 42 0.046
gb|DR055649.1|DR055649 RTCA1_25_B07.b1_A029 Roots minus cal... 42 0.046
gb|DR055722.1|DR055722 RTCA1_25_B07.g1_A029 Roots minus cal... 42 0.046
gb|DR057043.1|DR057043 RTNIT1_2_E01.b1_A029 Roots minus nit... 42 0.046
gb|DR061097.1|DR061097 RTNIT1_32_C01.b1_A029 Roots minus ni... 42 0.046
gb|DR092404.1|DR092404 STRR1_1_E06.b1_A033 Stem Response Re... 42 0.046
gb|DR092490.1|DR092490 STRR1_1_E06.g1_A033 Stem Response Re... 42 0.046
gb|DR100593.1|DR100593 STRR1_65_G06.b1_A033 Stem Response R... 42 0.046
gb|DR160246.1|DR160246 RTFE1_4_H05.g1_A029 Roots minus iron... 42 0.046
gb|DR167142.1|DR167142 RTPHOS1_17_A07.b1_A029 Roots minus p... 42 0.046
gb|DR167219.1|DR167219 RTPHOS1_17_A07.g1_A029 Roots minus p... 42 0.046
gb|DR384758.1|DR384758 RTHG1_4_H10.b1_A029 Roots plus added... 42 0.046
gb|DR384838.1|DR384838 RTHG1_4_H10.g1_A029 Roots plus added... 42 0.046
gb|DR744591.1|DR744591 RTCU1_23_B10.g1_A029 Roots plus adde... 42 0.046
gb|DT625952.1|DT625952 EST1157876 Sequencing ESTs from lobl... 42 0.046
gb|DT626855.1|DT626855 EST1159931 Sequencing ESTs from lobl... 42 0.046
>gb|AW056850.1|AW056850 ST57B04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST57B04, mRNA sequence
Length = 438
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 91 gaactccagcggcctctcccacacgtcggggtcgcgc 55
>gb|CF386135.1|CF386135 RTDR1_8_E10.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_8_E10_A015 5', mRNA
sequence
Length = 649
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 312 gaactccagcggcctctcccacacgtcggggtcgcgc 276
>gb|CF387703.1|CF387703 RTDR1_19_C11.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_19_C11_A015 5', mRNA
sequence
Length = 702
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 479 gaactccagcggcctctcccacacgtcggggtcgcgc 515
>gb|CF388973.1|CF388973 RTDR2_16_D05.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_16_D05_A021 5', mRNA
sequence
Length = 662
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 440 gaactccagcggcctctcccacacgtcggggtcgcgc 404
>gb|CF390685.1|CF390685 RTDR2_20_D05.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_20_D05_A021 5', mRNA
sequence
Length = 740
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 468 gaactccagcggcctctcccacacgtcggggtcgcgc 432
>gb|CF394868.1|CF394868 RTDS2_8_H11.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_8_H11_A021 3', mRNA sequence
Length = 751
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 118 gaactccagcggcctctcccacacgtcggggtcgcgc 82
>gb|CF394958.1|CF394958 RTDS2_8_H11.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_8_H11_A021 5', mRNA sequence
Length = 726
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 453 gaactccagcggcctctcccacacgtcggggtcgcgc 417
>gb|CF477876.1|CF477876 RTWW3_13_A04.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_13_A04_A022 5', mRNA sequence
Length = 670
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 632 gaactccagcggcctctcccacacgtcggggtcgcgc 596
>gb|CF664646.1|CF664646 RTCNT1_11_D06.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_11_D06_A029 3', mRNA sequence
Length = 636
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 118 gaactccagcggcctctcccacacgtcggggtcgcgc 82
>gb|CF672937.1|CF672937 RTCNT1_75_A10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_75_A10_A029 3', mRNA sequence
Length = 407
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 43 gaactccagcggcctctcccacacgtcggggtcgcgc 79
>gb|CF673013.1|CF673013 RTCNT1_75_A10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_75_A10_A029 5', mRNA sequence
Length = 685
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 630 gaactccagcggcctctcccacacgtcggggtcgcgc 666
>gb|CO172749.1|CO172749 NDL1_31_D07.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_31_D07_A029 5', mRNA sequence
Length = 720
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 651 gaactccagcggcctctcccacacgtcggggtcgcgc 615
>gb|CV033403.1|CV033403 RTNACL1_34_G06.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_34_G06_A029 3', mRNA sequence
Length = 630
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 46 gaactccagcggcctctcccacacgtcggggtcgcgc 10
>gb|CV033413.1|CV033413 RTNACL1_34_H08.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_34_H08_A029 3', mRNA sequence
Length = 798
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 271 gaactccagcggcctctcccacacgtcggggtcgcgc 235
>gb|CV033500.1|CV033500 RTNACL1_34_H08.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_34_H08_A029 5', mRNA sequence
Length = 667
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 276 gaactccagcggcctctcccacacgtcggggtcgcgc 240
>gb|CV036172.1|CV036172 RTNACL1_57_E12.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_57_E12_A029 3', mRNA sequence
Length = 715
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 56 gaactccagcggcctctcccacacgtcggggtcgcgc 20
>gb|CV036239.1|CV036239 RTNACL1_57_E12.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_57_E12_A029 5', mRNA sequence
Length = 713
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 419 gaactccagcggcctctcccacacgtcggggtcgcgc 383
>gb|CV135378.1|CV135378 EST846587 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICMB24 5' end, mRNA sequence
Length = 871
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 226 gaactccagcggcctctcccacacgtcggggtcgcgc 190
>gb|CX650345.1|CX650345 COLD1_45_C03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_45_C03_A029 3', mRNA sequence
Length = 741
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 481 gaactccagcggcctctcccacacgtcggggtcgcgc 517
>gb|CX650419.1|CX650419 COLD1_45_C03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_45_C03_A029 5', mRNA sequence
Length = 843
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 637 gaactccagcggcctctcccacacgtcggggtcgcgc 673
>gb|CX715775.1|CX715775 RTPQ1_36_A08.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_36_A08_A032 5', mRNA sequence
Length = 596
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 422 gaactccagcggcctctcccacacgtcggggtcgcgc 386
>gb|DN460749.1|DN460749 EST956548 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPII213 5' end, mRNA sequence
Length = 720
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 126 gaactccagcggcctctcccacacgtcggggtcgcgc 90
>gb|DR012954.1|DR012954 HEAT1_16_C09.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_16_C09_A029 3', mRNA sequence
Length = 773
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 97 gaactccagcggcctctcccacacgtcggggtcgcgc 133
>gb|DR013036.1|DR013036 HEAT1_16_C09.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_16_C09_A029 5', mRNA sequence
Length = 709
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 588 gaactccagcggcctctcccacacgtcggggtcgcgc 624
>gb|DR025160.1|DR025160 STRS1_70_A08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_70_A08_A034 3', mRNA sequence
Length = 733
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 122 gaactccagcggcctctcccacacgtcggggtcgcgc 86
>gb|DR025238.1|DR025238 STRS1_70_A08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_70_A08_A034 5', mRNA sequence
Length = 727
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 447 gaactccagcggcctctcccacacgtcggggtcgcgc 411
>gb|DR050330.1|DR050330 RTBOR1_22_F04.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_22_F04_A029 5', mRNA sequence
Length = 796
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 520 gaactccagcggcctctcccacacgtcggggtcgcgc 484
>gb|DR055649.1|DR055649 RTCA1_25_B07.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_25_B07_A029 3', mRNA sequence
Length = 713
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 120 gaactccagcggcctctcccacacgtcggggtcgcgc 84
>gb|DR055722.1|DR055722 RTCA1_25_B07.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_25_B07_A029 5', mRNA sequence
Length = 691
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 359 gaactccagcggcctctcccacacgtcggggtcgcgc 323
>gb|DR057043.1|DR057043 RTNIT1_2_E01.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_2_E01_A029 3', mRNA sequence
Length = 641
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 124 gaactccagcggcctctcccacacgtcggggtcgcgc 88
>gb|DR061097.1|DR061097 RTNIT1_32_C01.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_32_C01_A029 3', mRNA sequence
Length = 628
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 108 gaactccagcggcctctcccacacgtcggggtcgcgc 72
>gb|DR092404.1|DR092404 STRR1_1_E06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_E06_A033 3', mRNA sequence
Length = 933
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 412 gaactccagcggcctctcccacacgtcggggtcgcgc 376
>gb|DR092490.1|DR092490 STRR1_1_E06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_E06_A033 5', mRNA sequence
Length = 860
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 519 gaactccagcggcctctcccacacgtcggggtcgcgc 483
>gb|DR100593.1|DR100593 STRR1_65_G06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_65_G06_A033 3', mRNA sequence
Length = 651
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 48 gaactccagcggcctctcccacacgtcggggtcgcgc 12
>gb|DR160246.1|DR160246 RTFE1_4_H05.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_4_H05_A029 5', mRNA sequence
Length = 768
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 483 gaactccagcggcctctcccacacgtcggggtcgcgc 519
>gb|DR167142.1|DR167142 RTPHOS1_17_A07.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_17_A07_A029 3', mRNA sequence
Length = 838
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 119 gaactccagcggcctctcccacacgtcggggtcgcgc 155
>gb|DR167219.1|DR167219 RTPHOS1_17_A07.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_17_A07_A029 5', mRNA sequence
Length = 745
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 613 gaactccagcggcctctcccacacgtcggggtcgcgc 649
>gb|DR384758.1|DR384758 RTHG1_4_H10.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_4_H10_A029 3', mRNA sequence
Length = 624
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 122 gaactccagcggcctctcccacacgtcggggtcgcgc 86
>gb|DR384838.1|DR384838 RTHG1_4_H10.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_4_H10_A029 5', mRNA sequence
Length = 723
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 245 gaactccagcggcctctcccacacgtcggggtcgcgc 209
>gb|DR744591.1|DR744591 RTCU1_23_B10.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_23_B10_A029 5', mRNA sequence
Length = 795
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 578 gaactccagcggcctctcccacacgtcggggtcgcgc 614
>gb|DT625952.1|DT625952 EST1157876 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA548 5' end, mRNA sequence
Length = 876
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 226 gaactccagcggcctctcccacacgtcggggtcgcgc 190
>gb|DT626855.1|DT626855 EST1159931 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAS14 5' end, mRNA sequence
Length = 720
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 463 gaactcgagcgggctgtcccacacctcggggtcgcgc 499
|||||| ||||| || |||||||| ||||||||||||
Sbjct: 126 gaactccagcggcctctcccacacgtcggggtcgcgc 90
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 93,087
Number of Sequences: 355925
Number of extensions: 93087
Number of successful extensions: 25605
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25537
Number of HSP's gapped (non-prelim): 68
length of query: 1067
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1048
effective length of database: 210,514,662
effective search space: 220619365776
effective search space used: 220619365776
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)