BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619548.2.1
(691 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW043150.1|AW043150 ST29H12 Pine TriplEx shoot tip libra... 56 2e-006
gb|BE762025.1|BE762025 NXCI_076_B04_F NXCI (Nsf Xylem Compr... 56 2e-006
gb|BF010697.1|BF010697 NXCI_066_D05_F NXCI (Nsf Xylem Compr... 56 2e-006
gb|BF777970.1|BF777970 NXSI_079_D10_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|BG039395.1|BG039395 NXSI_098_E10_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|BG039741.1|BG039741 NXSI_103_E05_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|BG040412.1|BG040412 NXSI_108_A01_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|BG275739.1|BG275739 NXSI_145_D02_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|BQ290653.1|BQ290653 NXRV047_H09_F NXRV (Nsf Xylem Root w... 56 2e-006
gb|BQ634458.1|BQ634458 NXRV069_B09_F NXRV (Nsf Xylem Root w... 56 2e-006
gb|BQ699273.1|BQ699273 NXRV121_F03_F NXRV (Nsf Xylem Root w... 56 2e-006
gb|BQ702743.1|BQ702743 NXSI_132_A12_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|DR013608.1|DR013608 HEAT1_20_H04.b1_A029 Root at 37 C fo... 56 2e-006
gb|DR013688.1|DR013688 HEAT1_20_H04.g1_A029 Root at 37 C fo... 56 2e-006
gb|DR094147.1|DR094147 STRR1_12_F02.g1_A033 Stem Response R... 56 2e-006
gb|DR097342.1|DR097342 STRR1_34_C01.b1_A033 Stem Response R... 56 2e-006
gb|DR097417.1|DR097417 STRR1_34_C01.g3_A033 Stem Response R... 56 2e-006
gb|DR385428.1|DR385428 RTHG1_8_D02.g1_A029 Roots plus added... 56 2e-006
gb|DR386621.1|DR386621 RTHG1_16_H12.b1_A029 Roots plus adde... 56 2e-006
gb|DR386817.1|DR386817 RTHG1_17_D05.g1_A029 Roots plus adde... 56 2e-006
gb|BX248947.1|BX248947 BX248947 Pinus pinaster differenciat... 54 8e-006
gb|BX249288.1|BX249288 BX249288 Pinus pinaster differenciat... 54 8e-006
gb|BX249705.1|BX249705 BX249705 Pinus pinaster differenciat... 54 8e-006
gb|BX252578.1|BX252578 BX252578 Pinus pinaster differenciat... 54 8e-006
gb|BX253886.1|BX253886 BX253886 Pinus pinaster differenciat... 54 8e-006
gb|BX255547.1|BX255547 BX255547 Pinus pinaster differenciat... 54 8e-006
gb|BX255612.1|BX255612 BX255612 Pinus pinaster differenciat... 54 8e-006
gb|BX667544.1|BX667544 BX667544 RN Pinus pinaster cDNA clon... 54 8e-006
gb|BX676937.1|BX676937 BX676937 RN Pinus pinaster cDNA clon... 54 8e-006
gb|BQ291015.1|BQ291015 NXRV054_E11_F NXRV (Nsf Xylem Root w... 48 5e-004
gb|BQ655215.1|BQ655215 NXRV091_E09_F NXRV (Nsf Xylem Root w... 48 5e-004
gb|BX784111.1|BX784111 BX784111 Pinus pinaster differenciat... 48 5e-004
gb|CX712546.1|CX712546 RTPQ1_3_E03.b2_A032 Roots treated wi... 48 5e-004
gb|CX712625.1|CX712625 RTPQ1_3_E03.g1_A032 Roots treated wi... 48 5e-004
gb|CX715269.1|CX715269 RTPQ1_33_B11.b1_A032 Roots treated w... 48 5e-004
gb|DR384292.1|DR384292 RTHG1_1_G04.b1_A029 Roots plus added... 48 5e-004
gb|DR384373.1|DR384373 RTHG1_1_G04.g1_A029 Roots plus added... 48 5e-004
gb|DR387646.1|DR387646 RTHG1_23_E10.b1_A029 Roots plus adde... 48 5e-004
gb|DR387724.1|DR387724 RTHG1_23_E10.g2_A029 Roots plus adde... 48 5e-004
gb|DR682025.1|DR682025 EST1072100 Normalized pine embryo li... 48 5e-004
gb|DR682026.1|DR682026 EST1072101 Normalized pine embryo li... 48 5e-004
gb|AW985283.1|AW985283 NXNV_135_D03_F Nsf Xylem Normal wood... 46 0.002
gb|BF517130.1|BF517130 NXSI_009_G11_F NXSI (Nsf Xylem Side ... 46 0.002
gb|BF517570.1|BF517570 NXSI_026_B07_F NXSI (Nsf Xylem Side ... 46 0.002
gb|BG275297.1|BG275297 NXSI_142_B05_F NXSI (Nsf Xylem Side ... 46 0.002
gb|BI644005.1|BI644005 NXPV_138_D12_F NXPV (Nsf Xylem Plani... 46 0.002
gb|BM492793.1|BM492793 NXRV_031_B05_F NXRV (Nsf Xylem Root ... 46 0.002
gb|CD022605.1|CD022605 NXPV_070_F05_F NXPV (Nsf Xylem Plani... 46 0.002
gb|CD023432.1|CD023432 NXPV_126_C08_F NXPV (Nsf Xylem Plani... 46 0.002
gb|AW981694.1|AW981694 PC15F02 Pine TriplEx pollen cone lib... 44 0.007
gb|AW981749.1|AW981749 PC18C01 Pine TriplEx pollen cone lib... 42 0.030
gb|BX250663.1|BX250663 BX250663 Pinus pinaster differenciat... 42 0.030
gb|BQ699739.1|BQ699739 NXRV128_C07_F NXRV (Nsf Xylem Root w... 42 0.030
gb|BQ701976.1|BQ701976 NXSI_122_H02_F NXSI (Nsf Xylem Side ... 42 0.030
gb|BX677322.1|BX677322 BX677322 RN Pinus pinaster cDNA clon... 42 0.030
gb|BX682457.1|BX682457 BX682457 Pinus pinaster differenciat... 42 0.030
gb|CR392530.1|CR392530 CR392530 RN Pinus pinaster cDNA clon... 42 0.030
gb|CR394462.1|CR394462 CR394462 RN Pinus pinaster cDNA clon... 42 0.030
gb|AW290226.1|AW290226 NXNV015D07F Nsf Xylem Normal wood Ve... 40 0.12
gb|BX253489.1|BX253489 BX253489 Pinus pinaster differenciat... 40 0.12
gb|BE209354.1|BE209354 NXNV_166_G05_F Nsf Xylem Normal wood... 40 0.12
gb|BF609354.1|BF609354 NXSI_045_C11_F NXSI (Nsf Xylem Side ... 40 0.12
gb|BF609742.1|BF609742 NXSI_048_H06_F NXSI (Nsf Xylem Side ... 40 0.12
gb|BM428059.1|BM428059 NXRV_008_C04_F NXRV (Nsf Xylem Root ... 40 0.12
gb|CD026856.1|CD026856 NXNV015D07 Nsf Xylem Normal wood Ver... 40 0.12
gb|CF672195.1|CF672195 RTCNT1_62_B03.b1_A029 Root control P... 40 0.12
gb|CF672271.1|CF672271 RTCNT1_62_B03.g1_A029 Root control P... 40 0.12
gb|BX681171.1|BX681171 BX681171 RS Pinus pinaster cDNA clon... 40 0.12
gb|BX682308.2|BX682308 BX682308 Pinus pinaster differenciat... 40 0.12
gb|CR394394.1|CR394394 CR394394 RN Pinus pinaster cDNA clon... 40 0.12
gb|DN629401.1|DN629401 EST980217 Subtracted pine embryo lib... 40 0.12
gb|DN632672.1|DN632672 EST983488 Subtracted pine embryo lib... 40 0.12
gb|DR386700.1|DR386700 RTHG1_16_H12.g1_A029 Roots plus adde... 40 0.12
gb|DN629125.1|DN629125 EST979941 Subtracted pine embryo lib... 38 0.46
gb|DN630723.1|DN630723 EST981539 Subtracted pine embryo lib... 38 0.46
gb|DT629796.1|DT629796 EST1154208 Subtracted pine embryo li... 38 0.46
gb|DT630082.1|DT630082 EST1154494 Subtracted pine embryo li... 38 0.46
>gb|AW043150.1|AW043150 ST29H12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST29H12, mRNA sequence
Length = 601
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 271 tgatgcacaacaggacatactgcgctgaaatcgcacacaa 310
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 243 acaagaagaccaggcactaccttcccaa 270
||||||||||||| |||||||| |||||
Sbjct: 193 acaagaagaccagacactacctgcccaa 220
>gb|BE762025.1|BE762025 NXCI_076_B04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_076_B04 5' similar to Arabidopsis
thaliana sequence At4g18100 ribosomal protein L32 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 378
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 284 tgatgcacaacaggacatactgcgctgaaatcgcacacaa 323
>gb|BF010697.1|BF010697 NXCI_066_D05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_066_D05 5' similar to Arabidopsis
thaliana sequence At4g18100 ribosomal protein L32 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 399
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 284 tgatgcacaacaggacatactgcgctgaaatcgcacacaa 323
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 243 acaagaagaccaggcactaccttcccaa 270
||||||||||||| |||||||| |||||
Sbjct: 206 acaagaagaccagacactacctgcccaa 233
>gb|BF777970.1|BF777970 NXSI_079_D10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_079_D10 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 578
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 282 tgatgcacaacaggacatactgcgctgaaatcgcacacaa 321
>gb|BG039395.1|BG039395 NXSI_098_E10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_098_E10 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 555
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 282 tgatgcacaacaggacatactgcgctgaaatcgcacacaa 321
>gb|BG039741.1|BG039741 NXSI_103_E05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_103_E05 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 517
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 308 tgatgcacaacaggacatactgcgctgaaatcgcacacaa 347
>gb|BG040412.1|BG040412 NXSI_108_A01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_108_A01 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 550
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 287 tgatgcacaacaggacatactgcgctgaaatcgcacacaa 326
>gb|BG275739.1|BG275739 NXSI_145_D02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_145_D02 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 524
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 282 tgatgcacaacaggacatactgcgctgaaatcgcacacaa 321
>gb|BQ290653.1|BQ290653 NXRV047_H09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV047_H09 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 771
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 404 tgatgcacaacaggacatactgcgctgaaatcgcacacaa 443
>gb|BQ634458.1|BQ634458 NXRV069_B09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV069_B09 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 516
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 261 tgatgcacaacaggacatactgcgctgaaatcgcacacaa 300
>gb|BQ699273.1|BQ699273 NXRV121_F03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV121_F03 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 407
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 290 tgatgcacaacaggacatactgcgctgaaatcgcacacaa 329
>gb|BQ702743.1|BQ702743 NXSI_132_A12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_132_A12 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 467
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 287 tgatgcacaacaggacatactgcgctgaaatcgcacacaa 326
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 243 acaagaagaccaggcactaccttcccaa 270
||||||||||||| |||||||| |||||
Sbjct: 209 acaagaagaccagacactacctgcccaa 236
>gb|DR013608.1|DR013608 HEAT1_20_H04.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_H04_A029 3', mRNA sequence
Length = 782
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 292 tgatgcacaacaggacatactgcgctgaaatcgcacacaa 331
>gb|DR013688.1|DR013688 HEAT1_20_H04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_H04_A029 5', mRNA sequence
Length = 715
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 265 tgatgcacaacaggacatactgcgctgaaatcgcacacaa 304
>gb|DR094147.1|DR094147 STRR1_12_F02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_F02_A033 5', mRNA sequence
Length = 630
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 143 tgatgcacaacaggacatactgcgctgaaatcgcacacaa 182
>gb|DR097342.1|DR097342 STRR1_34_C01.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_34_C01_A033 3', mRNA sequence
Length = 718
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 290 tgatgcacaacaggacatactgcgctgaaatcgcacacaa 329
>gb|DR097417.1|DR097417 STRR1_34_C01.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_34_C01_A033 5', mRNA sequence
Length = 716
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 274 tgatgcacaacaggacatactgcgctgaaatcgcacacaa 313
>gb|DR385428.1|DR385428 RTHG1_8_D02.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_D02_A029 5', mRNA sequence
Length = 852
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 329 tgatgcacaacaggacatactgcgctgaaatcgcacacaa 368
>gb|DR386621.1|DR386621 RTHG1_16_H12.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_16_H12_A029 3', mRNA sequence
Length = 724
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 298 tgatgcacaacaggacatactgcgctgaaatcgcacacaa 337
>gb|DR386817.1|DR386817 RTHG1_17_D05.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_17_D05_A029 5', mRNA sequence
Length = 758
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 326 tgatgcacaacaggacatactgcgctgaaatcgcacacaa 365
>gb|BX248947.1|BX248947 BX248947 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP003A06 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 514
Score = 54.0 bits (27), Expect = 8e-006
Identities = 159/203 (78%)
Strand = Plus / Plus
Query: 158 tggcgcaggcccaagggtatcgactcccgcgtcaggcgtaagttcaagggatgcaccttg 217
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 174 tggcggaggcctaagggtattgattcacgcgttaggagaaaatttaagggatgtgccctt 233
Query: 218 atgcccaacatcggatatggctccgacaagaagaccaggcactaccttcccaacaagttc 277
||||| || || || ||||| || ||||||||||||| |||||||| ||||| ||
Sbjct: 234 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 293
Query: 278 aaaaagtttgttgttcacaatgtctccgagctggagctgctgctgatgcacaacaggact 337
|| ||||||||||| |||||||| || || || || || ||||||||||||||||
Sbjct: 294 aagaagtttgttgtccacaatgttcatgacctagaccttcttatgatgcacaacaggaca 353
Query: 338 tactgcgctgagatcgcccacaa 360
||||| ||||| ||||| |||||
Sbjct: 354 tactgtgctgaaatcgcacacaa 376
>gb|BX249288.1|BX249288 BX249288 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP022C07 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 664
Score = 54.0 bits (27), Expect = 8e-006
Identities = 159/203 (78%)
Strand = Plus / Plus
Query: 158 tggcgcaggcccaagggtatcgactcccgcgtcaggcgtaagttcaagggatgcaccttg 217
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 94 tggcggaggcctaagggtattgattcacgcgttaggagaaaatttaagggatgtgccctt 153
Query: 218 atgcccaacatcggatatggctccgacaagaagaccaggcactaccttcccaacaagttc 277
||||| || || || ||||| || ||||||||||||| |||||||| ||||| ||
Sbjct: 154 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 213
Query: 278 aaaaagtttgttgttcacaatgtctccgagctggagctgctgctgatgcacaacaggact 337
|| ||||||||||| |||||||| || || || || || ||||||||||||||||
Sbjct: 214 aagaagtttgttgtccacaatgttcatgacctagaccttcttatgatgcacaacaggaca 273
Query: 338 tactgcgctgagatcgcccacaa 360
||||| ||||| ||||| |||||
Sbjct: 274 tactgtgctgaaatcgcacacaa 296
>gb|BX249705.1|BX249705 BX249705 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP027D03 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 670
Score = 54.0 bits (27), Expect = 8e-006
Identities = 159/203 (78%)
Strand = Plus / Plus
Query: 158 tggcgcaggcccaagggtatcgactcccgcgtcaggcgtaagttcaagggatgcaccttg 217
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 198 tggcggaggcctaagggtattgattcacgcgttaggagaaaatttaagggatgtgccctt 257
Query: 218 atgcccaacatcggatatggctccgacaagaagaccaggcactaccttcccaacaagttc 277
||||| || || || ||||| || ||||||||||||| |||||||| ||||| ||
Sbjct: 258 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 317
Query: 278 aaaaagtttgttgttcacaatgtctccgagctggagctgctgctgatgcacaacaggact 337
|| ||||||||||| |||||||| || || || || || ||||||||||||||||
Sbjct: 318 aagaagtttgttgtccacaatgttcatgacctagaccttcttatgatgcacaacaggaca 377
Query: 338 tactgcgctgagatcgcccacaa 360
||||| ||||| ||||| |||||
Sbjct: 378 tactgtgctgaaatcgcacacaa 400
>gb|BX252578.1|BX252578 BX252578 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP066G01 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 594
Score = 54.0 bits (27), Expect = 8e-006
Identities = 159/203 (78%)
Strand = Plus / Plus
Query: 158 tggcgcaggcccaagggtatcgactcccgcgtcaggcgtaagttcaagggatgcaccttg 217
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 130 tggcggaggcctaagggtattgattcacgcgttaggagaaaatttaagggatgtgccctt 189
Query: 218 atgcccaacatcggatatggctccgacaagaagaccaggcactaccttcccaacaagttc 277
||||| || || || ||||| || ||||||||||||| |||||||| ||||| ||
Sbjct: 190 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 249
Query: 278 aaaaagtttgttgttcacaatgtctccgagctggagctgctgctgatgcacaacaggact 337
|| ||||||||||| |||||||| || || || || || ||||||||||||||||
Sbjct: 250 aagaagtttgttgtccacaatgttcatgacctagaccttcttatgatgcacaacaggaca 309
Query: 338 tactgcgctgagatcgcccacaa 360
||||| ||||| ||||| |||||
Sbjct: 310 tactgtgctgaaatcgcacacaa 332
>gb|BX253886.1|BX253886 BX253886 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP090A03 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 485
Score = 54.0 bits (27), Expect = 8e-006
Identities = 159/203 (78%)
Strand = Plus / Plus
Query: 158 tggcgcaggcccaagggtatcgactcccgcgtcaggcgtaagttcaagggatgcaccttg 217
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 145 tggcggaggcctaagggtattgattcacgcgttaggagaaaatttaagggatgtgccctt 204
Query: 218 atgcccaacatcggatatggctccgacaagaagaccaggcactaccttcccaacaagttc 277
||||| || || || ||||| || ||||||||||||| |||||||| ||||| ||
Sbjct: 205 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 264
Query: 278 aaaaagtttgttgttcacaatgtctccgagctggagctgctgctgatgcacaacaggact 337
|| ||||||||||| |||||||| || || || || || ||||||||||||||||
Sbjct: 265 aagaagtttgttgtccacaatgttcatgacctagaccttcttatgatgcacaacaggaca 324
Query: 338 tactgcgctgagatcgcccacaa 360
||||| ||||| ||||| |||||
Sbjct: 325 tactgtgctgaaatcgcacacaa 347
>gb|BX255547.1|BX255547 BX255547 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007A09 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 700
Score = 54.0 bits (27), Expect = 8e-006
Identities = 159/203 (78%)
Strand = Plus / Plus
Query: 158 tggcgcaggcccaagggtatcgactcccgcgtcaggcgtaagttcaagggatgcaccttg 217
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 313 tggcggaggcctaagggtattgattcacgcgttaggagaaaatttaagggatgtgccctt 372
Query: 218 atgcccaacatcggatatggctccgacaagaagaccaggcactaccttcccaacaagttc 277
||||| || || || ||||| || ||||||||||||| |||||||| ||||| ||
Sbjct: 373 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 432
Query: 278 aaaaagtttgttgttcacaatgtctccgagctggagctgctgctgatgcacaacaggact 337
|| ||||||||||| |||||||| || || || || || ||||||||||||||||
Sbjct: 433 aagaagtttgttgtccacaatgttcatgacctagaccttcttatgatgcacaacaggaca 492
Query: 338 tactgcgctgagatcgcccacaa 360
||||| ||||| ||||| |||||
Sbjct: 493 tactgtgctgaaatcgcacacaa 515
>gb|BX255612.1|BX255612 BX255612 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007G02 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 673
Score = 54.0 bits (27), Expect = 8e-006
Identities = 159/203 (78%)
Strand = Plus / Minus
Query: 158 tggcgcaggcccaagggtatcgactcccgcgtcaggcgtaagttcaagggatgcaccttg 217
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 626 tggcggaggcctaagggtattgattcacgcgttaggagaaaatttaagggatgtgccctt 567
Query: 218 atgcccaacatcggatatggctccgacaagaagaccaggcactaccttcccaacaagttc 277
||||| || || || ||||| || ||||||||||||| |||||||| ||||| ||
Sbjct: 566 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 507
Query: 278 aaaaagtttgttgttcacaatgtctccgagctggagctgctgctgatgcacaacaggact 337
|| ||||||||||| |||||||| || || || || || ||||||||||||||||
Sbjct: 506 aagaagtttgttgtccacaatgttcatgacctagaccttcttatgatgcacaacaggaca 447
Query: 338 tactgcgctgagatcgcccacaa 360
||||| ||||| ||||| |||||
Sbjct: 446 tactgtgctgaaatcgcacacaa 424
>gb|BX667544.1|BX667544 BX667544 RN Pinus pinaster cDNA clone RN09D02, mRNA sequence
Length = 506
Score = 54.0 bits (27), Expect = 8e-006
Identities = 159/203 (78%)
Strand = Plus / Plus
Query: 158 tggcgcaggcccaagggtatcgactcccgcgtcaggcgtaagttcaagggatgcaccttg 217
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 94 tggcggaggcctaagggtattgattcacgcgttaggagaaaatttaagggatgtgccctt 153
Query: 218 atgcccaacatcggatatggctccgacaagaagaccaggcactaccttcccaacaagttc 277
||||| || || || ||||| || ||||||||||||| |||||||| ||||| ||
Sbjct: 154 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 213
Query: 278 aaaaagtttgttgttcacaatgtctccgagctggagctgctgctgatgcacaacaggact 337
|| ||||||||||| |||||||| || || || || || ||||||||||||||||
Sbjct: 214 aagaagtttgttgtccacaatgttcatgacctagaccttcttatgatgcacaacaggaca 273
Query: 338 tactgcgctgagatcgcccacaa 360
||||| ||||| ||||| |||||
Sbjct: 274 tactgtgctgaaatcgcacacaa 296
>gb|BX676937.1|BX676937 BX676937 RN Pinus pinaster cDNA clone RN14D01, mRNA sequence
Length = 515
Score = 54.0 bits (27), Expect = 8e-006
Identities = 159/203 (78%)
Strand = Plus / Plus
Query: 158 tggcgcaggcccaagggtatcgactcccgcgtcaggcgtaagttcaagggatgcaccttg 217
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 93 tggcggaggcctaagggtattgattcacgcgttaggagaaaatttaagggatgtgccctt 152
Query: 218 atgcccaacatcggatatggctccgacaagaagaccaggcactaccttcccaacaagttc 277
||||| || || || ||||| || ||||||||||||| |||||||| ||||| ||
Sbjct: 153 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 212
Query: 278 aaaaagtttgttgttcacaatgtctccgagctggagctgctgctgatgcacaacaggact 337
|| ||||||||||| |||||||| || || || || || ||||||||||||||||
Sbjct: 213 aagaagtttgttgtccacaatgttcatgacctagaccttcttatgatgcacaacaggaca 272
Query: 338 tactgcgctgagatcgcccacaa 360
||||| ||||| ||||| |||||
Sbjct: 273 tactgtgctgaaatcgcacacaa 295
>gb|BQ291015.1|BQ291015 NXRV054_E11_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV054_E11 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 736
Score = 48.1 bits (24), Expect = 5e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgccaggctccgc 445
||||| ||||| ||||| ||||| || |||||||| ||||||||||| || | | | ||
Sbjct: 340 attgtagagcgagctgcacaacttgatatcgtggtgaccaacaagctagcgaagttgcgt 399
Query: 446 agccaagaggacgagt 461
||||||||||| ||||
Sbjct: 400 agccaagaggatgagt 415
Score = 42.1 bits (21), Expect = 0.030
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 197 aagttcaagggatgcaccttgatgcccaacatcggatatggctccgacaagaagaccagg 256
||||||||||| || || | |||||||| || || ||||| || ||||||||||||||
Sbjct: 151 aagttcaagggctgtgcccttatgcccaatattggttatggatctaacaagaagaccagg 210
Query: 257 cacta 261
|||||
Sbjct: 211 cacta 215
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 84 agaagatcgtgaagaagagggtcaagcagttcaagaggcc 123
||||||| ||||||||| | || ||| |||||||||||||
Sbjct: 38 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 77
>gb|BQ655215.1|BQ655215 NXRV091_E09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV091_E09 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 578
Score = 48.1 bits (24), Expect = 5e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgccaggctccgc 445
||||| ||||| ||||| ||||| || |||||||| ||||||||||| || | | | ||
Sbjct: 104 attgtagagcgagctgcacaacttgatatcgtggtgaccaacaagctagcgaagttgcgt 163
Query: 446 agccaagaggacgagt 461
||||||||||| ||||
Sbjct: 164 agccaagaggatgagt 179
>gb|BX784111.1|BX784111 BX784111 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 129C07 similar to 60S ribosomal protein L32,
mRNA sequence
Length = 477
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||| ||||| ||||| |||||
Sbjct: 15 tgatgcacaacaggacatactgtgctgaaatcgcacacaa 54
>gb|CX712546.1|CX712546 RTPQ1_3_E03.b2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_3_E03_A032 3', mRNA sequence
Length = 658
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||| ||||| ||||| |||||
Sbjct: 246 tgatgcacaacaggacatactgtgctgaaatcgcacacaa 285
>gb|CX712625.1|CX712625 RTPQ1_3_E03.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_3_E03_A032 5', mRNA sequence
Length = 676
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 321 tgatgcacaacaggacttactgcgctgagatcgcccacaa 360
|||||||||||||||| ||||| ||||| ||||| |||||
Sbjct: 244 tgatgcacaacaggacatactgtgctgaaatcgcacacaa 283
>gb|CX715269.1|CX715269 RTPQ1_33_B11.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_33_B11_A032 3', mRNA sequence
Length = 807
Score = 48.1 bits (24), Expect = 5e-004
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgccaggctccgc 445
||||| ||||| ||||| ||||| || |||||||| ||||||||||| || | | | ||
Sbjct: 433 attgtagagcgagctgcacaacttgatatcgtggtgaccaacaagctagcgaagttgcgt 374
Query: 446 agccaagaggacgagt 461
||||||||||| ||||
Sbjct: 373 agccaagaggatgagt 358
Score = 42.1 bits (21), Expect = 0.030
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 197 aagttcaagggatgcaccttgatgcccaacatcggatatggctccgacaagaagaccagg 256
||||||||||| || || | |||||||| || || ||||| || ||||||||||||||
Sbjct: 622 aagttcaagggctgtgcccttatgcccaatattggttatggatctaacaagaagaccagg 563
Query: 257 cacta 261
|||||
Sbjct: 562 cacta 558
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 84 agaagatcgtgaagaagagggtcaagcagttcaagaggcc 123
||||||| ||||||||| | || ||| |||||||||||||
Sbjct: 735 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 696
>gb|DR384292.1|DR384292 RTHG1_1_G04.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_1_G04_A029 3', mRNA sequence
Length = 732
Score = 48.1 bits (24), Expect = 5e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgccaggctccgc 445
||||| ||||| ||||| ||||| || |||||||| ||||||||||| || | | | ||
Sbjct: 308 attgtagagcgagctgcacaacttgatatcgtggtgaccaacaagctagcgaagttgcgt 367
Query: 446 agccaagaggacgagt 461
||||||||||| ||||
Sbjct: 368 agccaagaggatgagt 383
Score = 42.1 bits (21), Expect = 0.030
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 197 aagttcaagggatgcaccttgatgcccaacatcggatatggctccgacaagaagaccagg 256
||||||||||| || || | |||||||| || || ||||| || ||||||||||||||
Sbjct: 119 aagttcaagggctgtgcccttatgcccaatattggttatggatctaacaagaagaccagg 178
Query: 257 cacta 261
|||||
Sbjct: 179 cacta 183
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 84 agaagatcgtgaagaagagggtcaagcagttcaagaggcc 123
||||||| ||||||||| | || ||| |||||||||||||
Sbjct: 6 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 45
>gb|DR384373.1|DR384373 RTHG1_1_G04.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_1_G04_A029 5', mRNA sequence
Length = 746
Score = 48.1 bits (24), Expect = 5e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgccaggctccgc 445
||||| ||||| ||||| ||||| || |||||||| ||||||||||| || | | | ||
Sbjct: 311 attgtagagcgagctgcacaacttgatatcgtggtgaccaacaagctagcgaagttgcgt 370
Query: 446 agccaagaggacgagt 461
||||||||||| ||||
Sbjct: 371 agccaagaggatgagt 386
Score = 42.1 bits (21), Expect = 0.030
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 197 aagttcaagggatgcaccttgatgcccaacatcggatatggctccgacaagaagaccagg 256
||||||||||| || || | |||||||| || || ||||| || ||||||||||||||
Sbjct: 122 aagttcaagggctgtgcccttatgcccaatattggttatggatctaacaagaagaccagg 181
Query: 257 cacta 261
|||||
Sbjct: 182 cacta 186
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 84 agaagatcgtgaagaagagggtcaagcagttcaagaggcc 123
||||||| ||||||||| | || ||| |||||||||||||
Sbjct: 9 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 48
>gb|DR387646.1|DR387646 RTHG1_23_E10.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_23_E10_A029 3', mRNA sequence
Length = 831
Score = 48.1 bits (24), Expect = 5e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgccaggctccgc 445
||||| ||||| ||||| ||||| || |||||||| ||||||||||| || | | | ||
Sbjct: 364 attgtagagcgagctgcacaacttgatatcgtggtgaccaacaagctagcgaagttgcgt 423
Query: 446 agccaagaggacgagt 461
||||||||||| ||||
Sbjct: 424 agccaagaggatgagt 439
Score = 42.1 bits (21), Expect = 0.030
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 197 aagttcaagggatgcaccttgatgcccaacatcggatatggctccgacaagaagaccagg 256
||||||||||| || || | |||||||| || || ||||| || ||||||||||||||
Sbjct: 175 aagttcaagggctgtgcccttatgcccaatattggttatggatctaacaagaagaccagg 234
Query: 257 cacta 261
|||||
Sbjct: 235 cacta 239
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 84 agaagatcgtgaagaagagggtcaagcagttcaagaggcc 123
||||||| ||||||||| | || ||| |||||||||||||
Sbjct: 62 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 101
>gb|DR387724.1|DR387724 RTHG1_23_E10.g2_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_23_E10_A029 5', mRNA sequence
Length = 610
Score = 48.1 bits (24), Expect = 5e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgccaggctccgc 445
||||| ||||| ||||| ||||| || |||||||| ||||||||||| || | | | ||
Sbjct: 361 attgtagagcgagctgcacaacttgatatcgtggtgaccaacaagctagcgaagttgcgt 420
Query: 446 agccaagaggacgagt 461
||||||||||| ||||
Sbjct: 421 agccaagaggatgagt 436
Score = 42.1 bits (21), Expect = 0.030
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 197 aagttcaagggatgcaccttgatgcccaacatcggatatggctccgacaagaagaccagg 256
||||||||||| || || | |||||||| || || ||||| || ||||||||||||||
Sbjct: 172 aagttcaagggctgtgcccttatgcccaatattggttatggatctaacaagaagaccagg 231
Query: 257 cacta 261
|||||
Sbjct: 232 cacta 236
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 84 agaagatcgtgaagaagagggtcaagcagttcaagaggcc 123
||||||| ||||||||| | || ||| |||||||||||||
Sbjct: 59 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 98
>gb|DR682025.1|DR682025 EST1072100 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA565, mRNA sequence
Length = 604
Score = 48.1 bits (24), Expect = 5e-004
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgccaggctccgc 445
||||| ||||| ||||| ||||| || |||||||| ||||||||||| || | | | ||
Sbjct: 369 attgtagagcgagctgcacaacttgatatcgtggtgaccaacaagctagcgaagttgcgt 310
Query: 446 agccaagaggacgagt 461
||||||||||| ||||
Sbjct: 309 agccaagaggatgagt 294
Score = 42.1 bits (21), Expect = 0.030
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 197 aagttcaagggatgcaccttgatgcccaacatcggatatggctccgacaagaagaccagg 256
||||||||||| || || | |||||||| || || ||||| || ||||||||||||||
Sbjct: 558 aagttcaagggctgtgcccttatgcccaatattggttatggatctaacaagaagaccagg 499
Query: 257 cacta 261
|||||
Sbjct: 498 cacta 494
>gb|DR682026.1|DR682026 EST1072101 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA565 3' end, mRNA sequence
Length = 601
Score = 48.1 bits (24), Expect = 5e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgccaggctccgc 445
||||| ||||| ||||| ||||| || |||||||| ||||||||||| || | | | ||
Sbjct: 236 attgtagagcgagctgcacaacttgatatcgtggtgaccaacaagctagcgaagttgcgt 295
Query: 446 agccaagaggacgagt 461
||||||||||| ||||
Sbjct: 296 agccaagaggatgagt 311
Score = 42.1 bits (21), Expect = 0.030
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 197 aagttcaagggatgcaccttgatgcccaacatcggatatggctccgacaagaagaccagg 256
||||||||||| || || | |||||||| || || ||||| || ||||||||||||||
Sbjct: 47 aagttcaagggctgtgcccttatgcccaatattggttatggatctaacaagaagaccagg 106
Query: 257 cacta 261
|||||
Sbjct: 107 cacta 111
>gb|AW985283.1|AW985283 NXNV_135_D03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_135_D03 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 532
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagct 432
||||| ||||| ||||| ||||| || |||||||| |||||||||||
Sbjct: 397 attgtagagcgagctgcacaacttgatatcgtggtgaccaacaagct 443
Score = 42.1 bits (21), Expect = 0.030
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 197 aagttcaagggatgcaccttgatgcccaacatcggatatggctccgacaagaagaccagg 256
||||||||||| || || | |||||||| || || ||||| || ||||||||||||||
Sbjct: 208 aagttcaagggctgtgcccttatgcccaatattggttatggatctaacaagaagaccagg 267
Query: 257 cacta 261
|||||
Sbjct: 268 cacta 272
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 84 agaagatcgtgaagaagagggtcaagcagttcaagaggcc 123
||||||| ||||||||| | || ||| |||||||||||||
Sbjct: 95 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 134
>gb|BF517130.1|BF517130 NXSI_009_G11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_009_G11 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 424
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagct 432
||||| ||||| ||||| ||||| || |||||||| |||||||||||
Sbjct: 366 attgtagagcgagctgcacaacttgatatcgtggtgaccaacaagct 412
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 84 agaagatcgtgaagaagagggtcaagcagttcaagaggcc 123
||||||| ||||||||| | || ||| |||||||||||||
Sbjct: 64 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 103
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 243 acaagaagaccaggcacta 261
|||||||||||||||||||
Sbjct: 223 acaagaagaccaggcacta 241
>gb|BF517570.1|BF517570 NXSI_026_B07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_026_B07 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 481
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagct 432
||||| ||||| ||||| ||||| || |||||||| |||||||||||
Sbjct: 372 attgtagagcgagctgcacaacttgatatcgtggtgaccaacaagct 418
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 84 agaagatcgtgaagaagagggtcaagcagttcaagaggcc 123
||||||| ||||||||| | || ||| |||||||||||||
Sbjct: 70 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 109
>gb|BG275297.1|BG275297 NXSI_142_B05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_142_B05 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 533
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagct 432
||||| ||||| ||||| ||||| || |||||||| |||||||||||
Sbjct: 350 attgtagagcgagctgcacaacttgatatcgtggtgaccaacaagct 396
Score = 42.1 bits (21), Expect = 0.030
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 197 aagttcaagggatgcaccttgatgcccaacatcggatatggctccgacaagaagaccagg 256
||||||||||| || || | |||||||| || || ||||| || ||||||||||||||
Sbjct: 161 aagttcaagggctgtgcccttatgcccaatattggttatggatctaacaagaagaccagg 220
Query: 257 cacta 261
|||||
Sbjct: 221 cacta 225
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 84 agaagatcgtgaagaagagggtcaagcagttcaagaggcc 123
||||||| ||||||||| | || ||| |||||||||||||
Sbjct: 48 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 87
>gb|BI644005.1|BI644005 NXPV_138_D12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_138_D12 5' similar to Arabidopsis
thaliana sequence At4g18100 ribosomal protein L32 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 230
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagct 432
||||| ||||| ||||| ||||| || |||||||| |||||||||||
Sbjct: 73 attgtagagcgagctgcacaacttgatatcgtggtgaccaacaagct 119
>gb|BM492793.1|BM492793 NXRV_031_B05_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_031_B05 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 261
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagct 432
||||| ||||| ||||| ||||| || |||||||| |||||||||||
Sbjct: 175 attgtagagcgagctgcacaacttgatatcgtggtgaccaacaagct 221
Score = 40.1 bits (20), Expect = 0.12
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 218 atgcccaacatcggatatggctccgacaagaagaccaggcacta 261
|||||||| || || ||||| || |||||||||||||||||||
Sbjct: 7 atgcccaatattggttatggatctaacaagaagaccaggcacta 50
>gb|CD022605.1|CD022605 NXPV_070_F05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_070_F05 5' similar to Arabidopsis
thaliana sequence At4g18100 ribosomal protein L32 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 179
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagct 432
||||| ||||| ||||| ||||| || |||||||| |||||||||||
Sbjct: 73 attgtagagcgagctgcacaacttgatatcgtggtgaccaacaagct 119
>gb|CD023432.1|CD023432 NXPV_126_C08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_126_C08 5' similar to Arabidopsis
thaliana sequence At4g18100 ribosomal protein L32 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 199
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagct 432
||||| ||||| ||||| ||||| || |||||||| |||||||||||
Sbjct: 73 attgtagagcgagctgcacaacttgatatcgtggtgaccaacaagct 119
>gb|AW981694.1|AW981694 PC15F02 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC15F02, mRNA sequence
Length = 584
Score = 44.1 bits (22), Expect = 0.007
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 197 aagttcaagggatgcaccttgatgcccaacatcggatatggctccgacaagaagaccagg 256
||||||||||| || || | |||||||| || || ||||| || ||||||||||||||
Sbjct: 207 aagttcaagggctgtgcccttatgcccaatattggttatggntctaacaagaagaccagg 266
Query: 257 cacta 261
|||||
Sbjct: 267 cacta 271
Score = 40.1 bits (20), Expect = 0.12
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagct 432
||||| ||||| ||||| ||||| |||||||||| | |||||||||
Sbjct: 395 attgtagagcgagctgcacaacttgacatcgtggggancaacaagct 441
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 84 agaagatcgtgaagaagagggtcaagcagttcaagaggcc 123
||||||| ||||||||| | || ||| |||||||||||||
Sbjct: 94 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 133
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,837
Number of Sequences: 355925
Number of extensions: 79837
Number of successful extensions: 22452
Number of sequences better than 0.5: 78
Number of HSP's better than 0.5 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22204
Number of HSP's gapped (non-prelim): 239
length of query: 691
length of database: 217,277,237
effective HSP length: 19
effective length of query: 672
effective length of database: 210,514,662
effective search space: 141465852864
effective search space used: 141465852864
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)