BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2618988.2.1
         (631 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO175549.1|CO175549  NDL1_55_B04.g1_A029 Needles control ...    38   0.42 
gb|DR019885.1|DR019885  STRS1_33_D06.b1_A034 Shoot tip pitch...    38   0.42 
gb|DR167405.1|DR167405  RTPHOS1_18_D02.g1_A029 Roots minus p...    38   0.42 

>gb|CO175549.1|CO175549 NDL1_55_B04.g1_A029 Needles control Pinus taeda cDNA clone
           NDL1_55_B04_A029 5', mRNA sequence
          Length = 790

 Score = 38.2 bits (19), Expect = 0.42
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 471 ctccaggaccgagttccagccgcagtg 497
           |||||| ||||||||||| ||||||||
Sbjct: 365 ctccagcaccgagttccaaccgcagtg 339



>gb|DR019885.1|DR019885 STRS1_33_D06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
           cDNA clone STRS1_33_D06_A034 3', mRNA sequence
          Length = 846

 Score = 38.2 bits (19), Expect = 0.42
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 471 ctccaggaccgagttccagccgcagtg 497
           |||||| ||||||||||| ||||||||
Sbjct: 446 ctccagcaccgagttccaaccgcagtg 420



>gb|DR167405.1|DR167405 RTPHOS1_18_D02.g1_A029 Roots minus phosphorous Pinus taeda cDNA
           clone RTPHOS1_18_D02_A029 5', mRNA sequence
          Length = 796

 Score = 38.2 bits (19), Expect = 0.42
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 325 acctcctcggccgccacga 343
           |||||||||||||||||||
Sbjct: 222 acctcctcggccgccacga 240



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 54,520
Number of Sequences: 355925
Number of extensions: 54520
Number of successful extensions: 14376
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14371
Number of HSP's gapped (non-prelim): 5
length of query: 631
length of database: 217,277,237
effective HSP length: 19
effective length of query: 612
effective length of database: 210,514,662
effective search space: 128834973144
effective search space used: 128834973144
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)