BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2594433.2.1
         (766 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BF610280.1|BF610280  NXSI_057_D01_F NXSI (Nsf Xylem Side ...    50   1e-004
gb|CD025714.1|CD025714  NXSI_075_G02_F NXSI (Nsf Xylem Side ...    50   1e-004
gb|DR012558.1|DR012558  HEAT1_13_D05.g1_A029 Root at 37 C fo...    50   1e-004

>gb|BF610280.1|BF610280 NXSI_057_D01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
           clone NXSI_057_D01 5' similar to Arabidopsis thaliana
           sequence At5g08020 replication factor A - like protein
           see http://mips.gsf.de/proj/thal/db/index.html, mRNA
           sequence
          Length = 351

 Score = 50.1 bits (25), Expect = 1e-004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 690 ttgcaggtcttgcaagcacggtaccacat 718
           ||||| |||||||||||||||||||||||
Sbjct: 5   ttgcaagtcttgcaagcacggtaccacat 33



>gb|CD025714.1|CD025714 NXSI_075_G02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
           clone NXSI_075_G02 5' similar to Arabidopsis thaliana
           sequence At5g08020 replication factor A - like protein
           see http://mips.gsf.de/proj/thal/db/index.html, mRNA
           sequence
          Length = 104

 Score = 50.1 bits (25), Expect = 1e-004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 690 ttgcaggtcttgcaagcacggtaccacat 718
           ||||| |||||||||||||||||||||||
Sbjct: 5   ttgcaagtcttgcaagcacggtaccacat 33



>gb|DR012558.1|DR012558 HEAT1_13_D05.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
           HEAT1_13_D05_A029 5', mRNA sequence
          Length = 691

 Score = 50.1 bits (25), Expect = 1e-004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 690 ttgcaggtcttgcaagcacggtaccacat 718
           ||||| |||||||||||||||||||||||
Sbjct: 439 ttgcaagtcttgcaagcacggtaccacat 411



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 83,378
Number of Sequences: 355925
Number of extensions: 83378
Number of successful extensions: 21410
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21407
Number of HSP's gapped (non-prelim): 3
length of query: 766
length of database: 217,277,237
effective HSP length: 19
effective length of query: 747
effective length of database: 210,514,662
effective search space: 157254452514
effective search space used: 157254452514
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)