BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594130.2.1
(2756 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF396527.1|CF396527 RTDS2_22_D06.g1_A021 Drought-stresse... 135 1e-029
dbj|BD236171.1| Materials and method for modification of pl... 88 2e-015
gb|DR089935.1|DR089935 RTAL1_11_E09.g1_A029 Roots plus adde... 70 5e-010
dbj|BD236172.1| Materials and method for modification of pl... 70 5e-010
dbj|BD236175.1| Materials and method for modification of pl... 64 3e-008
gb|DR088818.1|DR088818 RTAL1_4_F06.g1_A029 Roots plus added... 58 2e-006
gb|DR078322.1|DR078322 RTFEPL1_3_G12.b1_A029 Roots plus add... 42 0.12
dbj|BD236170.1| Materials and method for modification of pl... 42 0.12
gb|BQ699095.1|BQ699095 NXRV119_D06_F NXRV (Nsf Xylem Root w... 40 0.47
>gb|CF396527.1|CF396527 RTDS2_22_D06.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_D06_A021 5', mRNA sequence
Length = 633
Score = 135 bits (68), Expect = 1e-029
Identities = 182/220 (82%)
Strand = Plus / Plus
Query: 1736 agtcatgatcaagctcttgttggtgacaagacaattgcattctggttgatggataaggat 1795
||||||||||| |||||||| ||||| |||||||| || || ||| | ||||| ||||||
Sbjct: 414 agtcatgatcaggctcttgtcggtgataagacaatagccttttggctcatggacaaggat 473
Query: 1796 atgtatgatttcatggctctggacaggccttcaacgcctcgcatcgatcgtgggatagca 1855
||||||||||| ||||| || || |||| | || || ||| |||||||| |||||
Sbjct: 474 atgtatgattttatggcacttgatcagcctgcgactccagccatagatcgtggaatagct 533
Query: 1856 ttacataaaatgattaggcttgtcacaatgggtttaggaggtgaaggctatctaaatttc 1915
| || || ||||| | |||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 534 cttcacaagatgatccgacttgtcacaatgggtttaggtggtgaagggtatctaaatttc 593
Query: 1916 atgggaaatgagtttgggcatcctgaatggatagattttc 1955
||||||||||| ||||| || || |||||||| |||||||
Sbjct: 594 atgggaaatgaatttggacacccagaatggattgattttc 633
Score = 101 bits (51), Expect = 2e-019
Identities = 111/131 (84%)
Strand = Plus / Plus
Query: 1349 tataaatttgatgggtttcgatttgatggggtgacctccatgatgtatactcaccatgga 1408
|||||||||||||||||| | |||||||| || || || |||||||| || || ||||||
Sbjct: 24 tataaatttgatgggtttaggtttgatggtgtaacatctatgatgtacacccatcatgga 83
Query: 1409 ttacaagtgacattcactgggaactatggcgagtattttggatttgccactgatgttgat 1468
||||| || ||||||||||||| |||| ||||| ||||||||||| |||||||| |||
Sbjct: 84 ttacaggtagcattcactgggaattatgctgagtactttggatttgctactgatgtagat 143
Query: 1469 gcagtagttta 1479
|| || |||||
Sbjct: 144 gctgtggttta 154
Score = 48.1 bits (24), Expect = 0.002
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 1572 ctgtccaagatggtggtgttggttttgattatcgtcttcatatggctgtcccagacaaat 1631
|||| |||||||| || || || ||||||||||| || |||||||| || | |||||||
Sbjct: 247 ctgtacaagatggcggagtgggatttgattatcgactccatatggcagtagctgacaaat 306
Query: 1632 ggattgaa 1639
||||||||
Sbjct: 307 ggattgaa 314
>dbj|BD236171.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 375
Score = 87.7 bits (44), Expect = 2e-015
Identities = 149/184 (80%)
Strand = Plus / Plus
Query: 770 cctgcctggatcaagttttctgtgcaggctccaggtgaaataccatacaacggtatatat 829
||||| ||||| |||||| |||| || ||||| ||||| || |||||||| || ||||||
Sbjct: 165 cctgcttggattaagtttgctgttcaagctccgggtgagattccatacaatggaatatat 224
Query: 830 tatgacccacctgaagaggagaaatatgtattcaaacaccctcaacctaagcggcccaag 889
||||| || ||| ||||| ||||||| ||| || | |||| ||| |||| ||||||
Sbjct: 225 tatgatccccctcctgaggataaatatgaatttaagtatcctcgaccaaagcagcccaaa 284
Query: 890 tcactgcggatatatgaatcacatgttggaatgagtagcccggaaccaaagataaataca 949
||| |||| ||||||||| | |||||||| ||||| ||| ||||||| || || ||||||
Sbjct: 285 tcattgcgaatatatgaagcgcatgttggcatgagcagcacggaacccaaaattaataca 344
Query: 950 tatg 953
||||
Sbjct: 345 tatg 348
Score = 42.1 bits (21), Expect = 0.12
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 611 ttcaacaactggaacccaaatgctgatgctatg 643
|||||||||||||| || |||||||||| ||||
Sbjct: 6 ttcaacaactggaatcccaatgctgatgttatg 38
>gb|DR089935.1|DR089935 RTAL1_11_E09.g1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_11_E09_A029 5', mRNA sequence
Length = 700
Score = 69.9 bits (35), Expect = 5e-010
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 1901 ggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagattttccaag 1959
|||||||| ||||| ||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 412 ggctatcttaattttatgggaaatgagtttggtcatccggaatggattgactttccaag 470
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 1733 gaaagtcatgatcaagctcttgttggtgacaagacaattgcattc 1777
|||||||||||||| | |||||||||||||||| |||||||||
Sbjct: 244 gaaagtcatgatcagtcaattgttggtgacaagactattgcattc 288
>dbj|BD236172.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 408
Score = 69.9 bits (35), Expect = 5e-010
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 1901 ggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagattttccaag 1959
|||||||| ||||| ||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 102 ggctatcttaattttatgggaaatgagtttggtcatccggaatggattgactttccaag 160
>dbj|BD236175.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 258
Score = 63.9 bits (32), Expect = 3e-008
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 1388 atgatgtatactcaccatggattacaagtgacattcactgggaactatggcgagtatttt 1447
|||||||| || || || |||||||| || ||||||||||||| |||| ||||| |||
Sbjct: 8 atgatgtacacccatcacggattacaggtagcattcactgggaattatgctgagtacttt 67
Query: 1448 ggatttgccactgatgttgatgcagtagttta 1479
|||||||| |||||||| ||||| || |||||
Sbjct: 68 ggatttgctactgatgtagatgctgtggttta 99
Score = 46.1 bits (23), Expect = 0.008
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 1572 ctgtccaagatggtggtgttggttttgattatcgtcttcatatggctgtcccagacaaat 1631
|||| |||||||| || || || ||||||||||| || |||||||| || | |||||||
Sbjct: 192 ctgtacaagatggcggagtgggatttgattatcgactccatatggcagtagctgacaaat 251
Query: 1632 ggattga 1638
|||||||
Sbjct: 252 ggattga 258
>gb|DR088818.1|DR088818 RTAL1_4_F06.g1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_4_F06_A029 5', mRNA sequence
Length = 638
Score = 58.0 bits (29), Expect = 2e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 1736 agtcatgatcaagctcttgttggtgacaagacaattgcattctggttgatgga 1788
|||||||| ||||| ||||| ||||||||||| || || ||||||||||||||
Sbjct: 380 agtcatgaccaagcccttgtcggtgacaagacgatcgcgttctggttgatgga 432
>gb|DR078322.1|DR078322 RTFEPL1_3_G12.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_3_G12_A029 3', mRNA sequence
Length = 825
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1784 atggataaggatatgtatgat 1804
|||||||||||||||||||||
Sbjct: 566 atggataaggatatgtatgat 586
>dbj|BD236170.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 451
Score = 42.1 bits (21), Expect = 0.12
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 611 ttcaacaactggaacccaaatgctgatgctatg 643
|||||||||||||| || |||||||||| ||||
Sbjct: 393 ttcaacaactggaatcccaatgctgatgttatg 425
>gb|BQ699095.1|BQ699095 NXRV119_D06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV119_D06 5', mRNA sequence
Length = 511
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1281 tattcaattatgggagttgg 1300
||||||||||||||||||||
Sbjct: 19 tattcaattatgggagttgg 38
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 330,758
Number of Sequences: 355925
Number of extensions: 330758
Number of successful extensions: 92034
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92014
Number of HSP's gapped (non-prelim): 20
length of query: 2756
length of database: 217,277,237
effective HSP length: 20
effective length of query: 2736
effective length of database: 210,158,737
effective search space: 574994304432
effective search space used: 574994304432
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)