BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591258.2.1
(819 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO369560.1|CO369560 RTK1_48_B06.b1_A029 Roots minus pota... 54 9e-006
gb|CO369642.1|CO369642 RTK1_48_B06.g1_A029 Roots minus pota... 54 9e-006
gb|DR089491.1|DR089491 RTAL1_9_B12.b1_A029 Roots plus added... 54 9e-006
gb|DR089573.1|DR089573 RTAL1_9_B12.g1_A029 Roots plus added... 54 9e-006
gb|CF395194.1|CF395194 RTDS2_10_D08.b1_A021 Drought-stresse... 46 0.002
gb|CF395282.1|CF395282 RTDS2_10_D08.g1_A021 Drought-stresse... 46 0.002
gb|CO170687.1|CO170687 NDL1_16_D09.b1_A029 Needles control ... 46 0.002
gb|CO170754.1|CO170754 NDL1_16_D09.g1_A029 Needles control ... 46 0.002
gb|DR089667.1|DR089667 RTAL1_10_C12.b1_A029 Roots plus adde... 46 0.002
gb|CX714318.1|CX714318 RTPQ1_20_C04.g1_A032 Roots treated w... 44 0.009
gb|AW010142.1|AW010142 ST02E03 Pine TriplEx shoot tip libra... 42 0.035
gb|AW225824.1|AW225824 ST72B10 Pine TriplEx shoot tip libra... 42 0.035
gb|AW226202.1|AW226202 ST79E08 Pine TriplEx shoot tip libra... 42 0.035
gb|CF392489.1|CF392489 RTDR3_6_H03.b1_A022 Loblolly pine ro... 42 0.035
gb|CF392510.1|CF392510 RTDR3_6_H03.g1_A022 Loblolly pine ro... 42 0.035
gb|CF395084.1|CF395084 RTDS2_9_C03.g1_A021 Drought-stressed... 42 0.035
gb|CF395952.1|CF395952 RTDS2_19_H03.g1_A021 Drought-stresse... 42 0.035
gb|CF395996.1|CF395996 RTDS2_20_F09.g1_A021 Drought-stresse... 42 0.035
gb|CF396004.1|CF396004 RTDS2_20_B05.g1_A021 Drought-stresse... 42 0.035
gb|CF396037.1|CF396037 RTDS2_20_E09.g1_A021 Drought-stresse... 42 0.035
gb|CF396945.1|CF396945 RTDS2_25_H07.b1_A021 Drought-stresse... 42 0.035
gb|CF470863.1|CF470863 RTDS1_15_B10.b1_A015 Drought-stresse... 42 0.035
gb|CF471006.1|CF471006 RTDS1_15_B10.g1_A015 Drought-stresse... 42 0.035
gb|CF473519.1|CF473519 RTWW2_3_G11.b2_A021 Well-watered lob... 42 0.035
gb|CF473614.1|CF473614 RTWW2_3_G11.g1_A021 Well-watered lob... 42 0.035
gb|CF473770.1|CF473770 RTWW2_4_A10.g1_A021 Well-watered lob... 42 0.035
gb|CF474959.1|CF474959 RTWW2_5_C09.b1_A021 Well-watered lob... 42 0.035
gb|CF475543.1|CF475543 RTWW2_12_E03.g1_A021 Well-watered lo... 42 0.035
gb|CF476429.1|CF476429 RTWW3_1_H02.b1_A022 Well-watered lob... 42 0.035
gb|CF477939.1|CF477939 RTWW3_17_G10.b1_A022 Well-watered lo... 42 0.035
gb|CF478061.1|CF478061 RTWW3_17_G10.g1_A022 Well-watered lo... 42 0.035
gb|CF479372.1|CF479372 RTWW3_23_F05.g1_A022 Well-watered lo... 42 0.035
gb|CF663501.1|CF663501 RTCNT1_3_F06.b1_A029 Root control Pi... 42 0.035
gb|CF663779.1|CF663779 RTCNT1_5_C07.b1_A029 Root control Pi... 42 0.035
gb|CF665330.1|CF665330 RTCNT1_15_G11.b1_A029 Root control P... 42 0.035
gb|CF665408.1|CF665408 RTCNT1_15_G11.g1_A029 Root control P... 42 0.035
gb|CF666290.1|CF666290 RTCNT1_22_F02.b1_A029 Root control P... 42 0.035
gb|CF667253.1|CF667253 RTCNT1_29_C06.b1_A029 Root control P... 42 0.035
gb|CF667338.1|CF667338 RTCNT1_29_C06.g1_A029 Root control P... 42 0.035
gb|CF669134.1|CF669134 RTCNT1_40_H02.g1_A029 Root control P... 42 0.035
gb|CF670657.1|CF670657 RTCNT1_51_E05.g1_A029 Root control P... 42 0.035
gb|CF671050.1|CF671050 RTCNT1_54_H04.b1_A029 Root control P... 42 0.035
gb|CF671166.1|CF671166 RTCNT1_55_E08.b1_A029 Root control P... 42 0.035
gb|CF671235.1|CF671235 RTCNT1_55_E08.g1_A029 Root control P... 42 0.035
gb|CF671464.1|CF671464 RTCNT1_57_F07.b1_A029 Root control P... 42 0.035
gb|CF671538.1|CF671538 RTCNT1_57_F07.g1_A029 Root control P... 42 0.035
gb|BX677596.1|BX677596 BX677596 RN Pinus pinaster cDNA clon... 42 0.035
gb|BX678499.1|BX678499 BX678499 RS Pinus pinaster cDNA clon... 42 0.035
gb|BX681654.1|BX681654 BX681654 RS Pinus pinaster cDNA clon... 42 0.035
gb|CR392624.1|CR392624 CR392624 RN Pinus pinaster cDNA clon... 42 0.035
gb|CR393179.1|CR393179 CR393179 RN Pinus pinaster cDNA clon... 42 0.035
gb|CO159389.1|CO159389 FLD1_13_F11.b1_A029 Root flooded Pin... 42 0.035
gb|CO168725.1|CO168725 NDL1_2_D01.b1_A029 Needles control P... 42 0.035
gb|CO168798.1|CO168798 NDL1_2_D01.g1_A029 Needles control P... 42 0.035
gb|CO174004.1|CO174004 NDL1_41_C04.b1_A029 Needles control ... 42 0.035
gb|CO174142.1|CO174142 NDL1_42_A10.b1_A029 Needles control ... 42 0.035
gb|CO174199.1|CO174199 NDL1_42_A10.g1_A029 Needles control ... 42 0.035
gb|CO174796.1|CO174796 NDL1_46_G11.b1_A029 Needles control ... 42 0.035
gb|CO174878.1|CO174878 NDL1_46_G11.g1_A029 Needles control ... 42 0.035
gb|CO175830.1|CO175830 NDL1_57_G10.b1_A029 Needles control ... 42 0.035
gb|CO176182.1|CO176182 NDL1_60_G08.b1_A029 Needles control ... 42 0.035
gb|CO176253.1|CO176253 NDL1_60_G08.g1_A029 Needles control ... 42 0.035
gb|CO176680.1|CO176680 NDL1_63_B12.g1_A029 Needles control ... 42 0.035
gb|CO200682.1|CO200682 GEO2_8_H03.g1_A032 Root gravitropism... 42 0.035
gb|CO362000.1|CO362000 NDL2_8_B01.g1_A029 Needles control 2... 42 0.035
gb|CO365078.1|CO365078 RTK1_23_B11.g1_A029 Roots minus pota... 42 0.035
gb|CO365601.1|CO365601 RTK1_18_C01.b1_A029 Roots minus pota... 42 0.035
gb|CO365680.1|CO365680 RTK1_18_C01.g1_A029 Roots minus pota... 42 0.035
gb|CO366519.1|CO366519 RTK1_28_H02.b1_A029 Roots minus pota... 42 0.035
gb|CO366579.1|CO366579 RTK1_28_E09.g1_A029 Roots minus pota... 42 0.035
gb|CO366602.1|CO366602 RTK1_28_H02.g1_A029 Roots minus pota... 42 0.035
gb|CO368463.1|CO368463 RTK1_40_F10.g1_A029 Roots minus pota... 42 0.035
gb|CO369328.1|CO369328 RTK1_46_H08.b1_A029 Roots minus pota... 42 0.035
gb|CV034172.1|CV034172 RTNACL1_39_E02.b1_A029 Roots plus ad... 42 0.035
gb|CV034250.1|CV034250 RTNACL1_39_E02.g1_A029 Roots plus ad... 42 0.035
gb|CV036558.1|CV036558 RTNACL1_60_C10.b1_A029 Roots plus ad... 42 0.035
gb|CV036627.1|CV036627 RTNACL1_60_C10.g1_A029 Roots plus ad... 42 0.035
gb|CX647440.1|CX647440 COLD1_16_H08.b1_A029 Root cold Pinus... 42 0.035
gb|CX649742.1|CX649742 COLD1_41_E08.b1_A029 Root cold Pinus... 42 0.035
gb|CX649816.1|CX649816 COLD1_41_D11.g1_A029 Root cold Pinus... 42 0.035
gb|CX649824.1|CX649824 COLD1_41_E08.g1_A029 Root cold Pinus... 42 0.035
gb|CX650759.1|CX650759 COLD1_47_H11.g1_A029 Root cold Pinus... 42 0.035
gb|CX652268.1|CX652268 COLD1_58_B09.b1_A029 Root cold Pinus... 42 0.035
gb|CX712238.1|CX712238 RTPQ1_1_F04.b2_A032 Roots treated wi... 42 0.035
gb|CX712317.1|CX712317 RTPQ1_1_F04.g1_A032 Roots treated wi... 42 0.035
gb|DR010981.1|DR010981 HEAT1_2_C05.g1_A029 Root at 37 C for... 42 0.035
gb|DR011705.1|DR011705 HEAT1_7_H05.b1_A029 Root at 37 C for... 42 0.035
gb|DR011785.1|DR011785 HEAT1_7_H05.g1_A029 Root at 37 C for... 42 0.035
gb|DR012052.1|DR012052 HEAT1_9_F11.g1_A029 Root at 37 C for... 42 0.035
gb|DR013440.1|DR013440 HEAT1_19_G12.b1_A029 Root at 37 C fo... 42 0.035
gb|DR013527.1|DR013527 HEAT1_19_G12.g1_A029 Root at 37 C fo... 42 0.035
gb|DR019328.1|DR019328 STRS1_29_F08.b1_A034 Shoot tip pitch... 42 0.035
gb|DR019402.1|DR019402 STRS1_29_F08.g1_A034 Shoot tip pitch... 42 0.035
gb|DR019659.1|DR019659 STRS1_31_C02.g1_A034 Shoot tip pitch... 42 0.035
gb|DR021359.1|DR021359 STRS1_44_D05.b1_A034 Shoot tip pitch... 42 0.035
gb|DR022978.1|DR022978 STRS1_54_E11.g1_A034 Shoot tip pitch... 42 0.035
gb|DR024176.1|DR024176 STRS1_62_G04.g1_A034 Shoot tip pitch... 42 0.035
gb|DR048275.1|DR048275 RTBOR1_7_E03.g2_A029 Roots plus adde... 42 0.035
gb|DR048474.1|DR048474 RTBOR1_9_D09.b1_A029 Roots plus adde... 42 0.035
gb|DR050696.1|DR050696 RTBOR1_25_D05.b1_A029 Roots plus add... 42 0.035
gb|DR050778.1|DR050778 RTBOR1_25_D05.g1_A029 Roots plus add... 42 0.035
gb|DR053676.1|DR053676 RTCA1_12_D09.g1_A029 Roots minus cal... 42 0.035
gb|DR053946.1|DR053946 RTCA1_14_G04.b1_A029 Roots minus cal... 42 0.035
gb|DR054032.1|DR054032 RTCA1_14_G04.g1_A029 Roots minus cal... 42 0.035
gb|DR054422.1|DR054422 RTCA1_17_F02.b1_A029 Roots minus cal... 42 0.035
gb|DR056230.1|DR056230 RTCA1_28_H12.g1_A029 Roots minus cal... 42 0.035
gb|DR057593.1|DR057593 RTNIT1_6_E07.g1_A029 Roots minus nit... 42 0.035
gb|DR059771.1|DR059771 RTNIT1_19_E02.g1_A029 Roots minus ni... 42 0.035
gb|DR060687.1|DR060687 RTNIT1_29_H07.b1_A029 Roots minus ni... 42 0.035
gb|DR060768.1|DR060768 RTNIT1_29_H07.g1_A029 Roots minus ni... 42 0.035
gb|DR060843.1|DR060843 RTNIT1_30_H06.b1_A029 Roots minus ni... 42 0.035
gb|DR060924.1|DR060924 RTNIT1_30_H06.g1_A029 Roots minus ni... 42 0.035
gb|DR070398.1|DR070398 RTDK1_13_C02.b1_A029 Roots, dark Pin... 42 0.035
gb|DR071489.1|DR071489 RTDK1_20_E09.b1_A029 Roots, dark Pin... 42 0.035
gb|DR091047.1|DR091047 RTAL1_19_C01.b1_A029 Roots plus adde... 42 0.035
gb|DR093563.1|DR093563 STRR1_9_B07.b1_A033 Stem Response Re... 42 0.035
gb|DR093637.1|DR093637 STRR1_9_B07.g1_A033 Stem Response Re... 42 0.035
gb|DR096362.1|DR096362 STRR1_27_B08.g1_A033 Stem Response R... 42 0.035
gb|DR099357.1|DR099357 STRR1_55_B04.b1_A033 Stem Response R... 42 0.035
gb|DR099426.1|DR099426 STRR1_55_B04.g1_A033 Stem Response R... 42 0.035
gb|DR101535.1|DR101535 STRR1_74_B02.b1_A033 Stem Response R... 42 0.035
gb|DR101598.1|DR101598 STRR1_74_B02.g1_A033 Stem Response R... 42 0.035
gb|DR110647.1|DR110647 RTS1_12_D03.b1_A029 Roots minus sulf... 42 0.035
gb|DR110733.1|DR110733 RTS1_12_D03.g1_A029 Roots minus sulf... 42 0.035
gb|DR110919.1|DR110919 RTS1_14_B07.b1_A029 Roots minus sulf... 42 0.035
gb|DR112139.1|DR112139 RTS1_26_D08.b1_A029 Roots minus sulf... 42 0.035
gb|DR112403.1|DR112403 RTS1_28_B01.b1_A029 Roots minus sulf... 42 0.035
gb|DR112480.1|DR112480 RTS1_28_B01.g1_A029 Roots minus sulf... 42 0.035
gb|DR116816.1|DR116816 RTMG1_3_A07.b1_A029 Roots minus magn... 42 0.035
gb|DR116893.1|DR116893 RTMG1_3_A07.g1_A029 Roots minus magn... 42 0.035
gb|DR117454.1|DR117454 RTMG1_7_C06.b1_A029 Roots minus magn... 42 0.035
gb|DR120074.1|DR120074 RTMG1_27_H06.b1_A029 Roots minus mag... 42 0.035
gb|DR164334.1|DR164334 RTFE1_48_G02.b1_A029 Roots minus iro... 42 0.035
gb|DR164418.1|DR164418 RTFE1_48_G02.g1_A029 Roots minus iro... 42 0.035
gb|DR165952.1|DR165952 RTPHOS1_8_H02.b1_A029 Roots minus ph... 42 0.035
gb|DR166032.1|DR166032 RTPHOS1_8_H02.g1_A029 Roots minus ph... 42 0.035
gb|DR166995.1|DR166995 RTPHOS1_16_A01.b1_A029 Roots minus p... 42 0.035
gb|DR167468.1|DR167468 RTPHOS1_19_A12.b1_A029 Roots minus p... 42 0.035
gb|DR167837.1|DR167837 RTPHOS1_21_A11.g1_A029 Roots minus p... 42 0.035
gb|DR168399.1|DR168399 RTPHOS1_25_E07.b1_A029 Roots minus p... 42 0.035
gb|DR177485.1|DR177485 RTMNUT1_5_C12.g1_A029 Roots minus mi... 42 0.035
gb|DR177778.1|DR177778 RTMNUT1_7_G07.b1_A029 Roots minus mi... 42 0.035
gb|DR177860.1|DR177860 RTMNUT1_7_G07.g1_A029 Roots minus mi... 42 0.035
gb|DR178358.1|DR178358 RTMNUT1_11_F05.b1_A029 Roots minus m... 42 0.035
gb|DR179257.1|DR179257 RTMNUT1_21_B04.b2_A029 Roots minus m... 42 0.035
gb|DR179904.1|DR179904 RTMNUT1_25_F04.b1_A029 Roots minus m... 42 0.035
gb|DR179978.1|DR179978 RTMNUT1_25_F04.g1_A029 Roots minus m... 42 0.035
gb|DR180042.1|DR180042 RTMNUT1_26_D05.b1_A029 Roots minus m... 42 0.035
gb|DR180124.1|DR180124 RTMNUT1_26_D05.g1_A029 Roots minus m... 42 0.035
gb|DR181666.1|DR181666 RTMNUT1_40_F09.b2_A029 Roots minus m... 42 0.035
gb|DR743002.1|DR743002 RTCU1_8_H07.g2_A029 Roots plus added... 42 0.035
gb|DR744115.1|DR744115 RTCU1_20_G08.b1_A029 Roots plus adde... 42 0.035
dbj|BD224330.1| Materials and methods for the modification ... 42 0.035
dbj|BD224331.1| Materials and methods for the modification ... 42 0.035
gb|BX677484.1|BX677484 BX677484 RN Pinus pinaster cDNA clon... 40 0.14
>gb|CO369560.1|CO369560 RTK1_48_B06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_48_B06_A029 3', mRNA sequence
Length = 834
Score = 54.0 bits (27), Expect = 9e-006
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 389 cagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgc 439
|||||||||||||||||| || ||||| | |||||||||||||| |||||
Sbjct: 430 cagccgctcgtggtagttcagatagttccctttgtccgcgtccacaaacgc 380
>gb|CO369642.1|CO369642 RTK1_48_B06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_48_B06_A029 5', mRNA sequence
Length = 765
Score = 54.0 bits (27), Expect = 9e-006
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 389 cagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgc 439
|||||||||||||||||| || ||||| | |||||||||||||| |||||
Sbjct: 712 cagccgctcgtggtagttcagatagttccctttgtccgcgtccacaaacgc 662
>gb|DR089491.1|DR089491 RTAL1_9_B12.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_9_B12_A029 3', mRNA sequence
Length = 815
Score = 54.0 bits (27), Expect = 9e-006
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 389 cagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgc 439
|||||||||||||||||| || ||||| | |||||||||||||| |||||
Sbjct: 223 cagccgctcgtggtagttcagatagttccctttgtccgcgtccacaaacgc 173
>gb|DR089573.1|DR089573 RTAL1_9_B12.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_9_B12_A029 5', mRNA sequence
Length = 826
Score = 54.0 bits (27), Expect = 9e-006
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 389 cagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgc 439
|||||||||||||||||| || ||||| | |||||||||||||| |||||
Sbjct: 562 cagccgctcgtggtagttcagatagttccctttgtccgcgtccacaaacgc 512
>gb|CF395194.1|CF395194 RTDS2_10_D08.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_10_D08_A021 3', mRNA sequence
Length = 645
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 389 cagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgc 439
|||||||||||||||||| || ||||| | ||||| |||||||| |||||
Sbjct: 160 cagccgctcgtggtagttcagatagttccctttgtctgcgtccacaaacgc 110
>gb|CF395282.1|CF395282 RTDS2_10_D08.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_10_D08_A021 5', mRNA sequence
Length = 803
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 389 cagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgc 439
|||||||||||||||||| || ||||| | ||||| |||||||| |||||
Sbjct: 619 cagccgctcgtggtagttcagatagttccctttgtctgcgtccacaaacgc 569
>gb|CO170687.1|CO170687 NDL1_16_D09.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_16_D09_A029 3', mRNA sequence
Length = 577
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 389 cagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgc 439
||||||||||||||| || | ||||| ||||||| ||||||||||||||
Sbjct: 242 cagccgctcgtggtacttcaaatagttctccttgtcggcgtccacgaacgc 192
>gb|CO170754.1|CO170754 NDL1_16_D09.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_16_D09_A029 5', mRNA sequence
Length = 653
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 389 cagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgc 439
||||||||||||||| || | ||||| ||||||| ||||||||||||||
Sbjct: 584 cagccgctcgtggtacttcaaatagttctccttgtcggcgtccacgaacgc 534
>gb|DR089667.1|DR089667 RTAL1_10_C12.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_10_C12_A029 3', mRNA sequence
Length = 694
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 389 cagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgc 439
|||||||||||||||||| || ||||| | ||||| |||||||| |||||
Sbjct: 100 cagccgctcgtggtagttcagatagttccctttgtctgcgtccacaaacgc 150
>gb|CX714318.1|CX714318 RTPQ1_20_C04.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_20_C04_A032 5', mRNA sequence
Length = 725
Score = 44.1 bits (22), Expect = 0.009
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 399 tggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
|||||||| | | ||||||| ||||| ||||||||||| || ||||||||
Sbjct: 612 tggtagttcacgtagttcactttgtctgcgtccacgaatgcaaagtcgaa 563
>gb|AW010142.1|AW010142 ST02E03 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST02E03, mRNA sequence
Length = 481
Score = 42.1 bits (21), Expect = 0.035
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 643 gagtacccggtgaagacgccaacctcgatggcgttcttggc 683
|||||||||||| | || |||| |||||||| |||||||||
Sbjct: 370 gagtacccggtgtacaccccaatctcgatggtgttcttggc 330
>gb|AW225824.1|AW225824 ST72B10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST72B10, mRNA sequence
Length = 412
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 43 agttcactttgtctgcgtccacgaatgcaaagtcgaa 7
>gb|AW226202.1|AW226202 ST79E08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST79E08, mRNA sequence
Length = 420
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 230 agttcactttgtctgcgtccacgaatgcaaagtcgaa 194
>gb|CF392489.1|CF392489 RTDR3_6_H03.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_6_H03_A022 3', mRNA
sequence
Length = 646
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 228 agttcactttgtctgcgtccacgaatgcaaagtcgaa 192
>gb|CF392510.1|CF392510 RTDR3_6_H03.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_6_H03_A022 5', mRNA
sequence
Length = 645
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 588 agttcactttgtctgcgtccacgaatgcaaagtcgaa 552
>gb|CF395084.1|CF395084 RTDS2_9_C03.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_9_C03_A021 5', mRNA sequence
Length = 761
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 369 agttcactttgtctgcgtccacgaatgcaaagtcgaa 333
>gb|CF395952.1|CF395952 RTDS2_19_H03.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_19_H03_A021 5', mRNA sequence
Length = 639
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 404 agttcactttgtctgcgtccacgaatgcaaagtcgaa 440
>gb|CF395996.1|CF395996 RTDS2_20_F09.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_20_F09_A021 5', mRNA sequence
Length = 660
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 602 agttcactttgtctgcgtccacgaatgcaaagtcgaa 566
>gb|CF396004.1|CF396004 RTDS2_20_B05.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_20_B05_A021 5', mRNA sequence
Length = 691
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 602 agttcactttgtctgcgtccacgaatgcaaagtcgaa 566
>gb|CF396037.1|CF396037 RTDS2_20_E09.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_20_E09_A021 5', mRNA sequence
Length = 657
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 603 agttcactttgtctgcgtccacgaatgcaaagtcgaa 567
>gb|CF396945.1|CF396945 RTDS2_25_H07.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_25_H07_A021 3', mRNA sequence
Length = 678
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 255 agttcactttgtctgcgtccacgaatgcaaagtcgaa 219
>gb|CF470863.1|CF470863 RTDS1_15_B10.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_15_B10_A015 3', mRNA sequence
Length = 593
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 120 agttcactttgtctgcgtccacgaatgcaaagtcgaa 84
>gb|CF471006.1|CF471006 RTDS1_15_B10.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_15_B10_A015 5', mRNA sequence
Length = 753
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 402 agttcactttgtctgcgtccacgaatgcaaagtcgaa 366
>gb|CF473519.1|CF473519 RTWW2_3_G11.b2_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_3_G11_A021 3', mRNA sequence
Length = 729
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 311 agttcactttgtctgcgtccacgaatgcaaagtcgaa 275
>gb|CF473614.1|CF473614 RTWW2_3_G11.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_3_G11_A021 5', mRNA sequence
Length = 630
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 570 agttcactttgtctgcgtccacgaatgcaaagtcgaa 534
>gb|CF473770.1|CF473770 RTWW2_4_A10.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_4_A10_A021 5', mRNA sequence
Length = 679
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 565 agttcactttgtctgcgtccacgaatgcaaagtcgaa 529
>gb|CF474959.1|CF474959 RTWW2_5_C09.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_5_C09_A021 3', mRNA sequence
Length = 698
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 280 agttcactttgtctgcgtccacgaatgcaaagtcgaa 244
>gb|CF475543.1|CF475543 RTWW2_12_E03.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_12_E03_A021 5', mRNA sequence
Length = 728
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 588 agttcactttgtctgcgtccacgaatgcaaagtcgaa 552
>gb|CF476429.1|CF476429 RTWW3_1_H02.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_1_H02_A022 3', mRNA sequence
Length = 478
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 60 agttcactttgtctgcgtccacgaatgcaaagtcgaa 24
>gb|CF477939.1|CF477939 RTWW3_17_G10.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_17_G10_A022 3', mRNA sequence
Length = 627
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 209 agttcactttgtctgcgtccacgaatgcaaagtcgaa 173
>gb|CF478061.1|CF478061 RTWW3_17_G10.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_17_G10_A022 5', mRNA sequence
Length = 741
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 599 agttcactttgtctgcgtccacgaatgcaaagtcgaa 563
>gb|CF479372.1|CF479372 RTWW3_23_F05.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_23_F05_A022 5', mRNA sequence
Length = 651
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 567 agttcactttgtctgcgtccacgaatgcaaagtcgaa 531
>gb|CF663501.1|CF663501 RTCNT1_3_F06.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_3_F06_A029 3', mRNA sequence
Length = 748
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 330 agttcactttgtctgcgtccacgaatgcaaagtcgaa 294
>gb|CF663779.1|CF663779 RTCNT1_5_C07.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_5_C07_A029 3', mRNA sequence
Length = 807
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 385 agttcactttgtctgcgtccacgaatgcaaagtcgaa 349
>gb|CF665330.1|CF665330 RTCNT1_15_G11.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_15_G11_A029 3', mRNA sequence
Length = 612
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 189 agttcactttgtctgcgtccacgaatgcaaagtcgaa 153
>gb|CF665408.1|CF665408 RTCNT1_15_G11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_15_G11_A029 5', mRNA sequence
Length = 641
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 211 agttcactttgtctgcgtccacgaatgcaaagtcgaa 175
>gb|CF666290.1|CF666290 RTCNT1_22_F02.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_22_F02_A029 3', mRNA sequence
Length = 647
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 186 agttcactttgtctgcgtccacgaatgcaaagtcgaa 150
>gb|CF667253.1|CF667253 RTCNT1_29_C06.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_29_C06_A029 3', mRNA sequence
Length = 751
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 330 agttcactttgtctgcgtccacgaatgcaaagtcgaa 294
>gb|CF667338.1|CF667338 RTCNT1_29_C06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_29_C06_A029 5', mRNA sequence
Length = 866
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 577 agttcactttgtctgcgtccacgaatgcaaagtcgaa 541
>gb|CF669134.1|CF669134 RTCNT1_40_H02.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_40_H02_A029 5', mRNA sequence
Length = 656
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 566 agttcactttgtctgcgtccacgaatgcaaagtcgaa 530
>gb|CF670657.1|CF670657 RTCNT1_51_E05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_51_E05_A029 5', mRNA sequence
Length = 678
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 391 agttcactttgtctgcgtccacgaatgcaaagtcgaa 427
>gb|CF671050.1|CF671050 RTCNT1_54_H04.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_54_H04_A029 3', mRNA sequence
Length = 601
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 183 agttcactttgtctgcgtccacgaatgcaaagtcgaa 147
>gb|CF671166.1|CF671166 RTCNT1_55_E08.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_55_E08_A029 3', mRNA sequence
Length = 749
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 330 agttcactttgtctgcgtccacgaatgcaaagtcgaa 294
>gb|CF671235.1|CF671235 RTCNT1_55_E08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_55_E08_A029 5', mRNA sequence
Length = 710
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 596 agttcactttgtctgcgtccacgaatgcaaagtcgaa 560
>gb|CF671464.1|CF671464 RTCNT1_57_F07.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_57_F07_A029 3', mRNA sequence
Length = 639
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 218 agttcactttgtctgcgtccacgaatgcaaagtcgaa 182
>gb|CF671538.1|CF671538 RTCNT1_57_F07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_57_F07_A029 5', mRNA sequence
Length = 676
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 414 agttcactttgtctgcgtccacgaatgcaaagtcgaa 378
>gb|BX677596.1|BX677596 BX677596 RN Pinus pinaster cDNA clone RN41G05, mRNA sequence
Length = 513
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 495 agttcactttgtcggcgtccacgaatgcaaagtcgaa 459
>gb|BX678499.1|BX678499 BX678499 RS Pinus pinaster cDNA clone RS10B01, mRNA sequence
Length = 538
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 307 agttcactttgtcggcgtccacgaatgcaaagtcgaa 271
>gb|BX681654.1|BX681654 BX681654 RS Pinus pinaster cDNA clone RS62E07, mRNA sequence
Length = 492
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 315 agttcactttgtcggcgtccacgaatgcaaagtcgaa 279
>gb|CR392624.1|CR392624 CR392624 RN Pinus pinaster cDNA clone RN35F03, mRNA sequence
Length = 522
Score = 42.1 bits (21), Expect = 0.035
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 412 agttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 270 agttcactttgtcggcgtccacgaatgcaaagtcgaa 234
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 76,410
Number of Sequences: 355925
Number of extensions: 76410
Number of successful extensions: 26393
Number of sequences better than 0.5: 155
Number of HSP's better than 0.5 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26174
Number of HSP's gapped (non-prelim): 217
length of query: 819
length of database: 217,277,237
effective HSP length: 19
effective length of query: 800
effective length of database: 210,514,662
effective search space: 168411729600
effective search space used: 168411729600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)