BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591248.2.1
(1222 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO370530.1|CO370530 RTK1_68_B06.g1_A029 Roots minus pota... 64 1e-008
gb|BF060615.1|BF060615 NXCI_118_B03_F NXCI (Nsf Xylem Compr... 62 6e-008
gb|BF516953.1|BF516953 NXSI_007_C11_F NXSI (Nsf Xylem Side ... 62 6e-008
gb|CF663920.1|CF663920 RTCNT1_6_B08.b1_A029 Root control Pi... 62 6e-008
gb|CF668810.1|CF668810 RTCNT1_38_G04.g1_A029 Root control P... 62 6e-008
gb|CF673071.1|CF673071 RTCNT1_75_H01.g1_A029 Root control P... 62 6e-008
gb|CO172882.1|CO172882 NDL1_32_B09.g1_A029 Needles control ... 62 6e-008
gb|CO176214.1|CO176214 NDL1_60_C02.g1_A029 Needles control ... 62 6e-008
gb|CO198819.1|CO198819 GEO1_16_G05.g1_A029 Root gravitropis... 62 6e-008
gb|CO363825.1|CO363825 RTK1_12_B11.b1_A029 Roots minus pota... 62 6e-008
gb|CO363908.1|CO363908 RTK1_12_B11.g1_A029 Roots minus pota... 62 6e-008
gb|CO365053.1|CO365053 RTK1_23_H06.b1_A029 Roots minus pota... 62 6e-008
gb|CO365142.1|CO365142 RTK1_23_H06.g1_A029 Roots minus pota... 62 6e-008
gb|CO368326.1|CO368326 RTK1_40_A07.b1_A029 Roots minus pota... 62 6e-008
gb|CX715048.1|CX715048 RTPQ1_30_B02.g1_A032 Roots treated w... 62 6e-008
gb|DR014982.1|DR014982 HEAT1_52_F11.g1_A029 Root at 37 C fo... 62 6e-008
gb|DR018974.1|DR018974 STRS1_27_C02.b1_A034 Shoot tip pitch... 62 6e-008
gb|DR018984.1|DR018984 STRS1_27_D02.b1_A034 Shoot tip pitch... 62 6e-008
gb|DR019056.1|DR019056 STRS1_27_C02.g1_A034 Shoot tip pitch... 62 6e-008
gb|DR019067.1|DR019067 STRS1_27_D02.g1_A034 Shoot tip pitch... 62 6e-008
gb|DR020177.1|DR020177 STRS1_35_D09.b1_A034 Shoot tip pitch... 62 6e-008
gb|DR020253.1|DR020253 STRS1_35_D09.g1_A034 Shoot tip pitch... 62 6e-008
gb|DR057721.1|DR057721 RTNIT1_7_A06.g1_A029 Roots minus nit... 62 6e-008
gb|DR070193.1|DR070193 RTDK1_11_G12.g1_A029 Roots, dark Pin... 62 6e-008
gb|DR072072.1|DR072072 RTDK1_23_H10.g1_A029 Roots, dark Pin... 62 6e-008
gb|DR099221.1|DR099221 STRR1_54_B05.b1_A033 Stem Response R... 62 6e-008
gb|DR099637.1|DR099637 STRR1_57_B05.b1_A033 Stem Response R... 62 6e-008
gb|DR101611.1|DR101611 STRR1_74_C04.g1_A033 Stem Response R... 62 6e-008
gb|DR161469.1|DR161469 RTFE1_12_A09.b1_A029 Roots minus iro... 62 6e-008
gb|DR161544.1|DR161544 RTFE1_12_A09.g1_A029 Roots minus iro... 62 6e-008
gb|DR167624.1|DR167624 RTPHOS1_20_B02.b1_A029 Roots minus p... 62 6e-008
gb|DR167697.1|DR167697 RTPHOS1_20_B02.g1_A029 Roots minus p... 62 6e-008
gb|U76756.1|PRU76756 Pinus radiata endo-beta-1,4-glucanase ... 62 6e-008
gb|BG040101.1|BG040101 NXSI_106_E02_F NXSI (Nsf Xylem Side ... 58 9e-007
gb|CF668728.1|CF668728 RTCNT1_38_G04.b1_A029 Root control P... 56 4e-006
gb|CF672997.1|CF672997 RTCNT1_75_H01.b1_A029 Root control P... 52 5e-005
gb|CO173387.1|CO173387 NDL1_35_G08.g1_A029 Needles control ... 52 5e-005
gb|BF220811.1|BF220811 NXCI_154_B06_F NXCI (Nsf Xylem Compr... 50 2e-004
gb|CO172809.1|CO172809 NDL1_32_B09.b1_A029 Needles control ... 50 2e-004
gb|DR072431.1|DR072431 RTDK1_26_F03.b1_A029 Roots, dark Pin... 50 2e-004
gb|DR072510.1|DR072510 RTDK1_26_F03.g1_A029 Roots, dark Pin... 50 2e-004
gb|DR163085.1|DR163085 RTFE1_24_H02.g1_A029 Roots minus iro... 48 9e-004
gb|DR013159.1|DR013159 HEAT1_17_H11.b1_A029 Root at 37 C fo... 42 0.053
gb|DR179146.1|DR179146 RTMNUT1_16_F11.b1_A029 Roots minus m... 42 0.053
gb|DR179224.1|DR179224 RTMNUT1_16_F11.g1_A029 Roots minus m... 42 0.053
gb|AA220880.1|AA220880 20 Pinus radiata post meiotic male c... 40 0.21
gb|AL750100.1|AL750100 AL750100 AS Pinus pinaster cDNA clon... 40 0.21
>gb|CO370530.1|CO370530 RTK1_68_B06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_68_B06_A029 5', mRNA sequence
Length = 708
Score = 63.9 bits (32), Expect = 1e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 563 gccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
|||||| ||||||||||| ||||| | ||| |||||||| |||||||| |||||||||||
Sbjct: 552 gccgtagcccaccatgtatgacattcccagagggttgtctcccagtatatagtccacctg 611
>gb|BF060615.1|BF060615 NXCI_118_B03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_118_B03 5' similar to Arabidopsis
thaliana sequence At1g02800 endo-1,4-beta-glucanase
precursor, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 343
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 115 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 57
>gb|BF516953.1|BF516953 NXSI_007_C11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_007_C11 5' similar to Arabidopsis thaliana
sequence At4g02290 putative endo-1,4-beta glucanase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 566
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 299 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 241
>gb|CF663920.1|CF663920 RTCNT1_6_B08.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_6_B08_A029 3', mRNA sequence
Length = 774
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 139 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 81
>gb|CF668810.1|CF668810 RTCNT1_38_G04.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_38_G04_A029 5', mRNA sequence
Length = 699
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 470 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 412
>gb|CF673071.1|CF673071 RTCNT1_75_H01.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_75_H01_A029 5', mRNA sequence
Length = 286
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 138 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 80
>gb|CO172882.1|CO172882 NDL1_32_B09.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_32_B09_A029 5', mRNA sequence
Length = 815
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 419 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 361
>gb|CO176214.1|CO176214 NDL1_60_C02.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_60_C02_A029 5', mRNA sequence
Length = 415
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 324 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 266
>gb|CO198819.1|CO198819 GEO1_16_G05.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_16_G05_A029 5', mRNA sequence
Length = 722
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 102 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 44
>gb|CO363825.1|CO363825 RTK1_12_B11.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_B11_A029 3', mRNA sequence
Length = 860
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 283 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 341
>gb|CO363908.1|CO363908 RTK1_12_B11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_B11_A029 5', mRNA sequence
Length = 780
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 578 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 636
>gb|CO365053.1|CO365053 RTK1_23_H06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_23_H06_A029 3', mRNA sequence
Length = 875
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 210 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 152
>gb|CO365142.1|CO365142 RTK1_23_H06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_23_H06_A029 5', mRNA sequence
Length = 855
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 226 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 168
>gb|CO368326.1|CO368326 RTK1_40_A07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_40_A07_A029 3', mRNA sequence
Length = 711
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 94 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 36
>gb|CX715048.1|CX715048 RTPQ1_30_B02.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_30_B02_A032 5', mRNA sequence
Length = 421
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 418 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 360
>gb|DR014982.1|DR014982 HEAT1_52_F11.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_52_F11_A029 5', mRNA sequence
Length = 877
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 563 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 621
>gb|DR018974.1|DR018974 STRS1_27_C02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_27_C02_A034 3', mRNA sequence
Length = 794
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 187 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 129
>gb|DR018984.1|DR018984 STRS1_27_D02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_27_D02_A034 3', mRNA sequence
Length = 791
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 185 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 127
>gb|DR019056.1|DR019056 STRS1_27_C02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_27_C02_A034 5', mRNA sequence
Length = 823
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 730 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 672
>gb|DR019067.1|DR019067 STRS1_27_D02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_27_D02_A034 5', mRNA sequence
Length = 845
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 731 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 673
>gb|DR020177.1|DR020177 STRS1_35_D09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_35_D09_A034 3', mRNA sequence
Length = 906
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 125 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 183
>gb|DR020253.1|DR020253 STRS1_35_D09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_35_D09_A034 5', mRNA sequence
Length = 734
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 574 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 632
>gb|DR057721.1|DR057721 RTNIT1_7_A06.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_7_A06_A029 5', mRNA sequence
Length = 903
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 648 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 706
>gb|DR070193.1|DR070193 RTDK1_11_G12.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_11_G12_A029 5', mRNA sequence
Length = 749
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 604 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 662
>gb|DR072072.1|DR072072 RTDK1_23_H10.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_23_H10_A029 5', mRNA sequence
Length = 689
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 631 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 573
>gb|DR099221.1|DR099221 STRR1_54_B05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_54_B05_A033 3', mRNA sequence
Length = 670
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| || || | ||| |||||||| ||||||||||||||||||||
Sbjct: 206 ccgtagcccaccatgtatgaaattcccagtgggttgtctcccagtatgtagtccacctg 148
>gb|DR099637.1|DR099637 STRR1_57_B05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_57_B05_A033 3', mRNA sequence
Length = 567
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 205 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 263
>gb|DR101611.1|DR101611 STRR1_74_C04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_74_C04_A033 5', mRNA sequence
Length = 574
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 205 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 147
>gb|DR161469.1|DR161469 RTFE1_12_A09.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_12_A09_A029 3', mRNA sequence
Length = 804
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 129 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 71
>gb|DR161544.1|DR161544 RTFE1_12_A09.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_12_A09_A029 5', mRNA sequence
Length = 729
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 224 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 166
>gb|DR167624.1|DR167624 RTPHOS1_20_B02.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_20_B02_A029 3', mRNA sequence
Length = 752
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 147 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 89
>gb|DR167697.1|DR167697 RTPHOS1_20_B02.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_20_B02_A029 5', mRNA sequence
Length = 835
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 225 ccgtagcccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 167
>gb|U76756.1|PRU76756 Pinus radiata endo-beta-1,4-glucanase (PrCel2) mRNA, complete cds
Length = 1950
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| || || |||||||| ||||| ||||||||||||||
Sbjct: 1312 ccgtagcccaccatgtatgacattcggagtgggttgtctcccaggatgtagtccacctg 1254
>gb|BG040101.1|BG040101 NXSI_106_E02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_106_E02 5' similar to Arabidopsis thaliana
sequence At4g02290 putative endo-1,4-beta glucanase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 550
Score = 58.0 bits (29), Expect = 9e-007
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 570 cccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctg 622
||||||||||| ||||| | || |||||||| ||||||||||||||||||||
Sbjct: 456 cccaccatgtatgacattccgagtgggttgtctcccagtatgtagtccacctg 404
>gb|CF668728.1|CF668728 RTCNT1_38_G04.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_38_G04_A029 3', mRNA sequence
Length = 782
Score = 56.0 bits (28), Expect = 4e-006
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacatccgc-agcgggttgtcgcccagtatgtagtccacctg 622
||||| ||||||||||| ||||| | | || |||||||| ||||||||||||||||||||
Sbjct: 105 ccgtagcccaccatgtatgacattcccgagtgggttgtctcccagtatgtagtccacctg 46
>gb|CF672997.1|CF672997 RTCNT1_75_H01.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_75_H01_A029 3', mRNA sequence
Length = 737
Score = 52.0 bits (26), Expect = 5e-005
Identities = 54/61 (88%), Gaps = 3/61 (4%)
Strand = Plus / Minus
Query: 564 ccgtaccccaccatgtacgacat--ccgcagcgggttgtcgcccagtatgtagtccacct 621
||||| ||||||||||| ||||| ||| || |||||||| |||||||||||||||||||
Sbjct: 130 ccgtagcccaccatgtatgacatttccg-agtgggttgtctcccagtatgtagtccacct 72
Query: 622 g 622
|
Sbjct: 71 g 71
>gb|CO173387.1|CO173387 NDL1_35_G08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_35_G08_A029 5', mRNA sequence
Length = 793
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 561 gcgccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacc 620
|||| ||| |||||||| || ||||| | || |||||||| ||||||||||||||||||
Sbjct: 645 gcgctgtagcccaccatatatgacattcctagtgggttgtctcccagtatgtagtccacc 586
Query: 621 tg 622
||
Sbjct: 585 tg 584
>gb|BF220811.1|BF220811 NXCI_154_B06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_154_B06 5' similar to Arabidopsis
thaliana sequence At4g02290 putative endo-1,4-beta
glucanase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 398
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 594 gggttgtcgcccagtatgtagtccacctg 622
|||||||| ||||||||||||||||||||
Sbjct: 366 gggttgtctcccagtatgtagtccacctg 338
>gb|CO172809.1|CO172809 NDL1_32_B09.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_32_B09_A029 3', mRNA sequence
Length = 682
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 594 gggttgtcgcccagtatgtagtccacctg 622
|||||||| ||||||||||||||||||||
Sbjct: 48 gggttgtctcccagtatgtagtccacctg 20
>gb|DR072431.1|DR072431 RTDK1_26_F03.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_26_F03_A029 3', mRNA sequence
Length = 667
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 603 cccagtatgtagtccacctgccgcttggc 631
|||||||||||||||||||| ||||||||
Sbjct: 194 cccagtatgtagtccacctggcgcttggc 222
>gb|DR072510.1|DR072510 RTDK1_26_F03.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_26_F03_A029 5', mRNA sequence
Length = 655
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 603 cccagtatgtagtccacctgccgcttggc 631
|||||||||||||||||||| ||||||||
Sbjct: 501 cccagtatgtagtccacctggcgcttggc 529
>gb|DR163085.1|DR163085 RTFE1_24_H02.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_24_H02_A029 5', mRNA sequence
Length = 744
Score = 48.1 bits (24), Expect = 9e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 595 ggttgtcgcccagtatgtagtccacctg 622
||||||| ||||||||||||||||||||
Sbjct: 744 ggttgtctcccagtatgtagtccacctg 717
>gb|DR013159.1|DR013159 HEAT1_17_H11.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_17_H11_A029 3', mRNA sequence
Length = 827
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 594 gggttgtcgcccagtatgtagtccacctg 622
|||||||| |||| |||||||||||||||
Sbjct: 497 gggttgtctcccaatatgtagtccacctg 525
>gb|DR179146.1|DR179146 RTMNUT1_16_F11.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_16_F11_A029 3', mRNA sequence
Length = 884
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 594 gggttgtcgcccagtatgtagtccacctg 622
|||||||| |||| |||||||||||||||
Sbjct: 267 gggttgtctcccaatatgtagtccacctg 239
>gb|DR179224.1|DR179224 RTMNUT1_16_F11.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_16_F11_A029 5', mRNA sequence
Length = 846
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 594 gggttgtcgcccagtatgtagtccacctg 622
|||||||| |||| |||||||||||||||
Sbjct: 353 gggttgtctcccaatatgtagtccacctg 325
>gb|AA220880.1|AA220880 20 Pinus radiata post meiotic male cone Pinus radiata cDNA clone
Prmc195a 5', mRNA sequence
Length = 369
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 523 gcgagctggcgcggtggtgg 542
||||||||||||||||||||
Sbjct: 149 gcgagctggcgcggtggtgg 130
>gb|AL750100.1|AL750100 AL750100 AS Pinus pinaster cDNA clone AS05G05 similar to PS II
OXYGEN-EVOLVING ENHANCER, mRNA sequence
Length = 703
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 523 gcgagctggcgcggtggtgg 542
||||||||||||||||||||
Sbjct: 163 gcgagctggcgcggtggtgg 144
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 90,639
Number of Sequences: 355925
Number of extensions: 90639
Number of successful extensions: 23190
Number of sequences better than 0.5: 47
Number of HSP's better than 0.5 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23128
Number of HSP's gapped (non-prelim): 60
length of query: 1222
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1203
effective length of database: 210,514,662
effective search space: 253249138386
effective search space used: 253249138386
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)