BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591194.2.1
(591 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF479761.1|CF479761 RTWW3_12_E10.b1_A022 Well-watered lo... 50 1e-004
gb|CF663211.1|CF663211 RTCNT1_1_B03.g1_A029 Root control Pi... 50 1e-004
gb|CF669641.1|CF669641 RTCNT1_45_E01.b1_A029 Root control P... 50 1e-004
gb|CO197323.1|CO197323 GEO1_5_A12.g1_A029 Root gravitropism... 50 1e-004
gb|CX645991.1|CX645991 COLD1_6_C08.g1_A029 Root cold Pinus ... 50 1e-004
gb|CX647894.1|CX647894 COLD1_25_E04.b1_A029 Root cold Pinus... 50 1e-004
gb|CX647967.1|CX647967 COLD1_25_E04.g1_A029 Root cold Pinus... 50 1e-004
gb|DR180858.1|DR180858 RTMNUT1_35_F12.b1_A029 Roots minus m... 50 1e-004
gb|DT631597.1|DT631597 EST1146528 Normalized pine embryo li... 38 0.39
>gb|CF479761.1|CF479761 RTWW3_12_E10.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_12_E10_A022 3', mRNA sequence
Length = 530
Score = 50.1 bits (25), Expect = 1e-004
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 448 gtagaactgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccc 507
|||||||||||| || | ||||||||| ||||| || | ||||| | ||||||||||||
Sbjct: 134 gtagaactgctgccccaagtactgccttgcccacatcccagaccttatgttccacatccc 75
Query: 508 cacgttgtccagc 520
| | |||||||||
Sbjct: 74 cgcattgtccagc 62
>gb|CF663211.1|CF663211 RTCNT1_1_B03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_1_B03_A029 5', mRNA sequence
Length = 583
Score = 50.1 bits (25), Expect = 1e-004
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 448 gtagaactgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccc 507
|||||||||||| || | ||||||||| ||||| || | ||||| | ||||||||||||
Sbjct: 451 gtagaactgctgccccaagtactgccttgcccacatcccagaccttatgttccacatccc 510
Query: 508 cacgttgtccagc 520
| | |||||||||
Sbjct: 511 cgcattgtccagc 523
>gb|CF669641.1|CF669641 RTCNT1_45_E01.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_45_E01_A029 3', mRNA sequence
Length = 679
Score = 50.1 bits (25), Expect = 1e-004
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 448 gtagaactgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccc 507
|||||||||||| || | ||||||||| ||||| || | ||||| | ||||||||||||
Sbjct: 283 gtagaactgctgccccaagtactgccttgcccacatcccagaccttatgttccacatccc 224
Query: 508 cacgttgtccagc 520
| | |||||||||
Sbjct: 223 cgcattgtccagc 211
>gb|CO197323.1|CO197323 GEO1_5_A12.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_5_A12_A029 5', mRNA sequence
Length = 689
Score = 50.1 bits (25), Expect = 1e-004
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 448 gtagaactgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccc 507
|||||||||||| || | ||||||||| ||||| || | ||||| | ||||||||||||
Sbjct: 370 gtagaactgctgccccaagtactgccttgcccacatcccagaccttatgttccacatccc 429
Query: 508 cacgttgtccagc 520
| | |||||||||
Sbjct: 430 cgcattgtccagc 442
>gb|CX645991.1|CX645991 COLD1_6_C08.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_6_C08_A029 5', mRNA sequence
Length = 789
Score = 50.1 bits (25), Expect = 1e-004
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 448 gtagaactgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccc 507
|||||||||||| || | ||||||||| ||||| || | ||||| | ||||||||||||
Sbjct: 639 gtagaactgctgccccaagtactgccttgcccacatcccagaccttatgttccacatccc 580
Query: 508 cacgttgtccagc 520
| | |||||||||
Sbjct: 579 cgcattgtccagc 567
>gb|CX647894.1|CX647894 COLD1_25_E04.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_E04_A029 3', mRNA sequence
Length = 862
Score = 50.1 bits (25), Expect = 1e-004
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 448 gtagaactgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccc 507
|||||||||||| || | ||||||||| ||||| || | ||||| | ||||||||||||
Sbjct: 67 gtagaactgctgccccaagtactgccttgcccacatcccagaccttatgttccacatccc 126
Query: 508 cacgttgtccagc 520
| | |||||||||
Sbjct: 127 cgcattgtccagc 139
>gb|CX647967.1|CX647967 COLD1_25_E04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_E04_A029 5', mRNA sequence
Length = 858
Score = 50.1 bits (25), Expect = 1e-004
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 448 gtagaactgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccc 507
|||||||||||| || | ||||||||| ||||| || | ||||| | ||||||||||||
Sbjct: 314 gtagaactgctgccccaagtactgccttgcccacatcccagaccttatgttccacatccc 373
Query: 508 cacgttgtccagc 520
| | |||||||||
Sbjct: 374 cgcattgtccagc 386
>gb|DR180858.1|DR180858 RTMNUT1_35_F12.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_35_F12_A029 3', mRNA sequence
Length = 817
Score = 50.1 bits (25), Expect = 1e-004
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 448 gtagaactgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccc 507
|||||||||||| || | ||||||||| ||||| || | ||||| | ||||||||||||
Sbjct: 456 gtagaactgctgccccaagtactgccttgcccacatcccagaccttatgttccacatccc 397
Query: 508 cacgttgtccagc 520
| | |||||||||
Sbjct: 396 cgcattgtccagc 384
>gb|DT631597.1|DT631597 EST1146528 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFA51 3' end, mRNA sequence
Length = 944
Score = 38.2 bits (19), Expect = 0.39
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 497 ttccacatccccacgttgtccag 519
|||||||| ||||||||||||||
Sbjct: 865 ttccacatgcccacgttgtccag 843
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 59,781
Number of Sequences: 355925
Number of extensions: 59781
Number of successful extensions: 15741
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15726
Number of HSP's gapped (non-prelim): 15
length of query: 591
length of database: 217,277,237
effective HSP length: 19
effective length of query: 572
effective length of database: 210,514,662
effective search space: 120414386664
effective search space used: 120414386664
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)