BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2542512.2.1
         (834 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CF387982.1|CF387982  RTDR1_17_D01.b1_A015 Loblolly pine r...    40   0.14 
gb|CF670738.1|CF670738  RTCNT1_52_E09.b1_A029 Root control P...    40   0.14 
gb|CF670746.1|CF670746  RTCNT1_52_F09.b1_A029 Root control P...    40   0.14 
gb|CF672829.1|CF672829  RTCNT1_74_E09.b1_A029 Root control P...    40   0.14 
gb|CF672901.1|CF672901  RTCNT1_74_E09.g1_A029 Root control P...    40   0.14 
gb|DR090325.1|DR090325  RTAL1_14_G02.b1_A029 Roots plus adde...    40   0.14 

>gb|CF387982.1|CF387982 RTDR1_17_D01.b1_A015 Loblolly pine roots recovering from drought
           DR1 Pinus taeda cDNA clone RTDR1_17_D01_A015 3', mRNA
           sequence
          Length = 660

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 377 gagttcaggccggagcggtt 396
           ||||||||||||||||||||
Sbjct: 67  gagttcaggccggagcggtt 86



>gb|CF670738.1|CF670738 RTCNT1_52_E09.b1_A029 Root control Pinus taeda cDNA clone
           RTCNT1_52_E09_A029 3', mRNA sequence
          Length = 605

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 377 gagttcaggccggagcggtt 396
           ||||||||||||||||||||
Sbjct: 29  gagttcaggccggagcggtt 48



>gb|CF670746.1|CF670746 RTCNT1_52_F09.b1_A029 Root control Pinus taeda cDNA clone
           RTCNT1_52_F09_A029 3', mRNA sequence
          Length = 633

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 377 gagttcaggccggagcggtt 396
           ||||||||||||||||||||
Sbjct: 57  gagttcaggccggagcggtt 76



>gb|CF672829.1|CF672829 RTCNT1_74_E09.b1_A029 Root control Pinus taeda cDNA clone
           RTCNT1_74_E09_A029 3', mRNA sequence
          Length = 695

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 377 gagttcaggccggagcggtt 396
           ||||||||||||||||||||
Sbjct: 103 gagttcaggccggagcggtt 122



>gb|CF672901.1|CF672901 RTCNT1_74_E09.g1_A029 Root control Pinus taeda cDNA clone
           RTCNT1_74_E09_A029 5', mRNA sequence
          Length = 758

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 377 gagttcaggccggagcggtt 396
           ||||||||||||||||||||
Sbjct: 484 gagttcaggccggagcggtt 503



>gb|DR090325.1|DR090325 RTAL1_14_G02.b1_A029 Roots plus added aluminum Pinus taeda cDNA
           clone RTAL1_14_G02_A029 3', mRNA sequence
          Length = 788

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 377 gagttcaggccggagcggtt 396
           ||||||||||||||||||||
Sbjct: 230 gagttcaggccggagcggtt 249



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 74,783
Number of Sequences: 355925
Number of extensions: 74783
Number of successful extensions: 18864
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18853
Number of HSP's gapped (non-prelim): 11
length of query: 834
length of database: 217,277,237
effective HSP length: 19
effective length of query: 815
effective length of database: 210,514,662
effective search space: 171569449530
effective search space used: 171569449530
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)