BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2542159.2.1
(1231 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR011404.1|DR011404 HEAT1_5_B08.g1_A029 Root at 37 C for... 54 1e-005
gb|CX653063.1|CX653063 COLD1_63_E02.b1_A029 Root cold Pinus... 52 6e-005
gb|CX653144.1|CX653144 COLD1_63_E02.g1_A029 Root cold Pinus... 52 6e-005
gb|DR091205.1|DR091205 RTAL1_20_C01.b1_A029 Roots plus adde... 52 6e-005
gb|BF060565.1|BF060565 NXCI_116_G11_F NXCI (Nsf Xylem Compr... 48 9e-004
gb|BF517580.1|BF517580 NXSI_026_C05_F NXSI (Nsf Xylem Side ... 48 9e-004
gb|CF392716.1|CF392716 RTDR3_5_C08.g1_A022 Loblolly pine ro... 48 9e-004
gb|CF394711.1|CF394711 RTDS2_7_F10.b1_A021 Drought-stressed... 48 9e-004
gb|CF394792.1|CF394792 RTDS2_7_F10.g1_A021 Drought-stressed... 48 9e-004
gb|CF395475.1|CF395475 RTDS2_11_F03.g1_A021 Drought-stresse... 48 9e-004
gb|CF477106.1|CF477106 RTWW3_5_F05.g1_A022 Well-watered lob... 48 9e-004
gb|CO160210.1|CO160210 FLD1_19_B02.g1_A029 Root flooded Pin... 48 9e-004
gb|CX652851.1|CX652851 COLD1_61_H07.g1_A029 Root cold Pinus... 48 9e-004
gb|DR019998.1|DR019998 STRS1_34_A01.b1_A034 Shoot tip pitch... 48 9e-004
gb|DR020066.1|DR020066 STRS1_34_A01.g1_A034 Shoot tip pitch... 48 9e-004
gb|DR047805.1|DR047805 RTBOR1_3_E01.g1_A029 Roots plus adde... 48 9e-004
gb|DR053344.1|DR053344 RTCA1_10_B11.g1_A029 Roots minus cal... 48 9e-004
gb|DR057516.1|DR057516 RTNIT1_6_F07.b1_A029 Roots minus nit... 48 9e-004
gb|DR057604.1|DR057604 RTNIT1_6_F07.g1_A029 Roots minus nit... 48 9e-004
gb|DR079681.1|DR079681 RTFEPL1_12_G11.g1_A029 Roots plus ad... 48 9e-004
gb|DR178613.1|DR178613 RTMNUT1_12_G11.g1_A029 Roots minus m... 48 9e-004
gb|DR683411.1|DR683411 EST1073487 Normalized pine embryo li... 48 9e-004
gb|DR683803.1|DR683803 EST1073879 Normalized pine embryo li... 48 9e-004
gb|DT631650.1|DT631650 EST1146581 Normalized pine embryo li... 48 9e-004
gb|BX249833.1|BX249833 BX249833 Pinus pinaster differenciat... 46 0.003
gb|BE496257.1|BE496257 NXCI_012_H04_F NXCI (Nsf Xylem Compr... 46 0.003
gb|BQ701276.1|BQ701276 NXSI_061_F07_F NXSI (Nsf Xylem Side ... 46 0.003
gb|DR012578.1|DR012578 HEAT1_13_F03.g1_A029 Root at 37 C fo... 46 0.003
gb|CF390127.1|CF390127 RTDR2_12_F05.g1_A021 Loblolly pine r... 44 0.013
gb|CF667690.1|CF667690 RTCNT1_31_H12.g1_A029 Root control P... 44 0.013
gb|CO158218.1|CO158218 FLD1_5_A04.g1_A029 Root flooded Pinu... 44 0.013
gb|CO361133.1|CO361133 NDL2_3_A10.b1_A029 Needles control 2... 44 0.013
gb|CO361209.1|CO361209 NDL2_3_A10.g1_A029 Needles control 2... 44 0.013
gb|DN614758.1|DN614758 EST967808 Subtracted pine embryo lib... 44 0.013
gb|DR057639.1|DR057639 RTNIT1_7_A07.b1_A029 Roots minus nit... 44 0.013
gb|DR060159.1|DR060159 RTNIT1_26_C09.b1_A029 Roots minus ni... 44 0.013
gb|DR164120.1|DR164120 RTFE1_47_A01.b1_A029 Roots minus iro... 44 0.013
gb|DR164196.1|DR164196 RTFE1_47_A01.g1_A029 Roots minus iro... 44 0.013
gb|DT629301.1|DT629301 EST1155871 Subtracted pine embryo li... 44 0.013
dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, co... 44 0.013
ref|NC_001631.1| Pinus thunbergii chloroplast, complete genome 44 0.013
gb|CF386181.1|CF386181 RTDR1_8_C10.g1_A015 Loblolly pine ro... 42 0.053
gb|CF401195.1|CF401195 RTWW1_10_E01.g1_A015 Well-watered lo... 42 0.053
gb|CO163312.1|CO163312 FLD1_40_F11.g1_A029 Root flooded Pin... 42 0.053
gb|DR119352.1|DR119352 RTMG1_22_E12.g1_A029 Roots minus mag... 42 0.053
gb|DR384686.1|DR384686 RTHG1_3_H03.g1_A029 Roots plus added... 42 0.053
gb|DR689996.1|DR689996 EST1080082 Normalized pine embryo li... 42 0.053
gb|DR692982.1|DR692982 EST1083070 Normalized pine embryo li... 42 0.053
gb|DR694913.1|DR694913 EST1085006 Normalized pine embryo li... 42 0.053
gb|DT638894.1|DT638894 EST1153825 Normalized pine embryo li... 42 0.053
gb|AI813094.1|AI813094 22H3 Pine Lambda Zap Xylem library P... 40 0.21
gb|AL750907.1|AL750907 AL750907 RS Pinus pinaster cDNA clon... 40 0.21
gb|BX253124.1|BX253124 BX253124 Pinus pinaster differenciat... 40 0.21
gb|AW736983.1|AW736983 NXNV_082_E04_F Nsf Xylem Normal wood... 40 0.21
gb|BE520049.1|BE520049 NXCI_028_F02_F NXCI (Nsf Xylem Compr... 40 0.21
gb|BF169637.1|BF169637 NXCI_125_F02_F NXCI (Nsf Xylem Compr... 40 0.21
gb|BF778807.1|BF778807 NXSI_087_D02_F NXSI (Nsf Xylem Side ... 40 0.21
gb|CF394997.1|CF394997 RTDS2_9_D02.b1_A021 Drought-stressed... 40 0.21
gb|CF477065.1|CF477065 RTWW3_5_E05.g1_A022 Well-watered lob... 40 0.21
gb|CO164486.1|CO164486 FLD1_48_G07.b1_A029 Root flooded Pin... 40 0.21
gb|CO361791.1|CO361791 NDL2_7_D04.b1_A029 Needles control 2... 40 0.21
gb|CO361869.1|CO361869 NDL2_7_D04.g1_A029 Needles control 2... 40 0.21
gb|CV135431.1|CV135431 EST846640 Sequencing ESTs from loblo... 40 0.21
gb|CX647889.1|CX647889 COLD1_25_D11.b1_A029 Root cold Pinus... 40 0.21
gb|DR010960.1|DR010960 HEAT1_2_A04.g1_A029 Root at 37 C for... 40 0.21
gb|DR091918.1|DR091918 RTAL1_24_G07.g1_A029 Roots plus adde... 40 0.21
gb|DR111611.1|DR111611 RTS1_19_C05.b1_A029 Roots minus sulf... 40 0.21
gb|DR683261.1|DR683261 EST1073337 Normalized pine embryo li... 40 0.21
gb|DR688824.1|DR688824 EST1078910 Normalized pine embryo li... 40 0.21
gb|DR688962.1|DR688962 EST1079048 Normalized pine embryo li... 40 0.21
gb|DR745173.1|DR745173 RTCU1_27_C02.g1_A029 Roots plus adde... 40 0.21
gb|DT626147.1|DT626147 EST1158071 Sequencing ESTs from lobl... 40 0.21
gb|DT631363.1|DT631363 EST1146294 Normalized pine embryo li... 40 0.21
gb|DT635043.1|DT635043 EST1149974 Normalized pine embryo li... 40 0.21
gb|DT635339.1|DT635339 EST1150270 Normalized pine embryo li... 40 0.21
>gb|DR011404.1|DR011404 HEAT1_5_B08.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_5_B08_A029 5', mRNA sequence
Length = 761
Score = 54.0 bits (27), Expect = 1e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 106 gaagaggaagaggaagaggaagaggag 132
|||||||||||||||||||||||||||
Sbjct: 730 gaagaggaagaggaagaggaagaggag 756
Score = 52.0 bits (26), Expect = 6e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 106 gaagaggaagaggaagaggaagagga 131
||||||||||||||||||||||||||
Sbjct: 724 gaagaggaagaggaagaggaagagga 749
Score = 52.0 bits (26), Expect = 6e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 106 gaagaggaagaggaagaggaagagga 131
||||||||||||||||||||||||||
Sbjct: 718 gaagaggaagaggaagaggaagagga 743
Score = 52.0 bits (26), Expect = 6e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 106 gaagaggaagaggaagaggaagagga 131
||||||||||||||||||||||||||
Sbjct: 712 gaagaggaagaggaagaggaagagga 737
Score = 52.0 bits (26), Expect = 6e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 106 gaagaggaagaggaagaggaagagga 131
||||||||||||||||||||||||||
Sbjct: 706 gaagaggaagaggaagaggaagagga 731
Score = 52.0 bits (26), Expect = 6e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 106 gaagaggaagaggaagaggaagagga 131
||||||||||||||||||||||||||
Sbjct: 700 gaagaggaagaggaagaggaagagga 725
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 109 gaggaagaggaagaggaagagga 131
|||||||||||||||||||||||
Sbjct: 697 gaggaagaggaagaggaagagga 719
>gb|CX653063.1|CX653063 COLD1_63_E02.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_63_E02_A029 3', mRNA sequence
Length = 658
Score = 52.0 bits (26), Expect = 6e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 212 aagatcctcttccttggcctcgacaacgccggcaagaccaccctcctccacatgctgaag 271
|||||||| ||||| ||||||||||| || || ||||| ||||| || |||||||| |||
Sbjct: 118 aagatccttttcctgggcctcgacaatgcaggaaagactacccttcttcacatgctcaag 177
Query: 272 ga 273
||
Sbjct: 178 ga 179
>gb|CX653144.1|CX653144 COLD1_63_E02.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_63_E02_A029 5', mRNA sequence
Length = 663
Score = 52.0 bits (26), Expect = 6e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 212 aagatcctcttccttggcctcgacaacgccggcaagaccaccctcctccacatgctgaag 271
|||||||| ||||| ||||||||||| || || ||||| ||||| || |||||||| |||
Sbjct: 99 aagatccttttcctgggcctcgacaatgcaggaaagactacccttcttcacatgctcaag 158
Query: 272 ga 273
||
Sbjct: 159 ga 160
>gb|DR091205.1|DR091205 RTAL1_20_C01.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_20_C01_A029 3', mRNA sequence
Length = 694
Score = 52.0 bits (26), Expect = 6e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 106 gaagaggaagaggaagaggaagagga 131
||||||||||||||||||||||||||
Sbjct: 38 gaagaggaagaggaagaggaagagga 13
Score = 52.0 bits (26), Expect = 6e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 106 gaagaggaagaggaagaggaagagga 131
||||||||||||||||||||||||||
Sbjct: 32 gaagaggaagaggaagaggaagagga 7
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 109 gaggaagaggaagaggaagagga 131
|||||||||||||||||||||||
Sbjct: 41 gaggaagaggaagaggaagagga 19
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 106 gaagaggaagaggaagaggaaga 128
|||||||||||||||||||||||
Sbjct: 26 gaagaggaagaggaagaggaaga 4
>gb|BF060565.1|BF060565 NXCI_116_G11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_116_G11 5', mRNA sequence
Length = 358
Score = 48.1 bits (24), Expect = 9e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 109 gaggaagaggaagaggaagaggag 132
||||||||||||||||||||||||
Sbjct: 274 gaggaagaggaagaggaagaggag 251
Score = 42.1 bits (21), Expect = 0.053
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 106 gaagaggaagaggaagaggaagagg 130
|||||||||||||||||||| ||||
Sbjct: 271 gaagaggaagaggaagaggaggagg 247
>gb|BF517580.1|BF517580 NXSI_026_C05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_026_C05 5', mRNA sequence
Length = 258
Score = 48.1 bits (24), Expect = 9e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 109 gaggaagaggaagaggaagaggag 132
||||||||||||||||||||||||
Sbjct: 24 gaggaagaggaagaggaagaggag 1
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 106 gaagaggaagaggaagagga 125
||||||||||||||||||||
Sbjct: 21 gaagaggaagaggaagagga 2
>gb|CF392716.1|CF392716 RTDR3_5_C08.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_5_C08_A022 5', mRNA
sequence
Length = 724
Score = 48.1 bits (24), Expect = 9e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 194 ctgtggcagaaggaggctaagatcctcttccttggcctcgacaacgccggcaagaccacc 253
||||||||||| ||||| ||||| || || |||||||| || || || ||||||||||||
Sbjct: 225 ctgtggcagaaagaggccaagattctatttcttggcctagataatgcaggcaagaccacc 284
>gb|CF394711.1|CF394711 RTDS2_7_F10.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_7_F10_A021 3', mRNA sequence
Length = 763
Score = 48.1 bits (24), Expect = 9e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 194 ctgtggcagaaggaggctaagatcctcttccttggcctcgacaacgccggcaagaccacc 253
||||||||||| ||||| ||||| || || |||||||| || || || ||||||||||||
Sbjct: 95 ctgtggcagaaagaggccaagattctatttcttggcctagataatgcaggcaagaccacc 154
>gb|CF394792.1|CF394792 RTDS2_7_F10.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_7_F10_A021 5', mRNA sequence
Length = 734
Score = 48.1 bits (24), Expect = 9e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 194 ctgtggcagaaggaggctaagatcctcttccttggcctcgacaacgccggcaagaccacc 253
||||||||||| ||||| ||||| || || |||||||| || || || ||||||||||||
Sbjct: 402 ctgtggcagaaagaggccaagattctatttcttggcctagataatgcaggcaagaccacc 461
>gb|CF395475.1|CF395475 RTDS2_11_F03.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_11_F03_A021 5', mRNA sequence
Length = 708
Score = 48.1 bits (24), Expect = 9e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 194 ctgtggcagaaggaggctaagatcctcttccttggcctcgacaacgccggcaagaccacc 253
||||||||||| ||||| ||||| || || |||||||| || || || ||||||||||||
Sbjct: 220 ctgtggcagaaagaggccaagattctatttcttggcctagataatgcaggcaagaccacc 279
>gb|CF477106.1|CF477106 RTWW3_5_F05.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_5_F05_A022 5', mRNA sequence
Length = 729
Score = 48.1 bits (24), Expect = 9e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 194 ctgtggcagaaggaggctaagatcctcttccttggcctcgacaacgccggcaagaccacc 253
||||||||||| ||||| ||||| || || |||||||| || || || ||||||||||||
Sbjct: 197 ctgtggcagaaagaggccaagattctatttcttggcctagataatgcaggcaagaccacc 256
>gb|CO160210.1|CO160210 FLD1_19_B02.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_19_B02_A029 5', mRNA sequence
Length = 723
Score = 48.1 bits (24), Expect = 9e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 109 gaggaagaggaagaggaagaggag 132
||||||||||||||||||||||||
Sbjct: 51 gaggaagaggaagaggaagaggag 28
Score = 42.1 bits (21), Expect = 0.053
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 106 gaagaggaagaggaagaggaagagg 130
|||||||||||||||||||| ||||
Sbjct: 48 gaagaggaagaggaagaggaggagg 24
>gb|CX652851.1|CX652851 COLD1_61_H07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_61_H07_A029 5', mRNA sequence
Length = 776
Score = 48.1 bits (24), Expect = 9e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 194 ctgtggcagaaggaggctaagatcctcttccttggcctcgacaacgccggcaagaccacc 253
||||||||||| ||||| ||||| || || |||||||| || || || ||||||||||||
Sbjct: 256 ctgtggcagaaagaggccaagattctatttcttggcctagataatgcaggcaagaccacc 315
>gb|DR019998.1|DR019998 STRS1_34_A01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_34_A01_A034 3', mRNA sequence
Length = 798
Score = 48.1 bits (24), Expect = 9e-004
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 194 ctgtggcagaaggaggctaagatcctcttccttggcctcgacaacgccggcaagaccacc 253
||||||||||| ||||| ||||| || || |||||||| || || || ||||||||||||
Sbjct: 497 ctgtggcagaaagaggccaagattctatttcttggcctagataatgcaggcaagaccacc 438
>gb|DR020066.1|DR020066 STRS1_34_A01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_34_A01_A034 5', mRNA sequence
Length = 798
Score = 48.1 bits (24), Expect = 9e-004
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 194 ctgtggcagaaggaggctaagatcctcttccttggcctcgacaacgccggcaagaccacc 253
||||||||||| ||||| ||||| || || |||||||| || || || ||||||||||||
Sbjct: 713 ctgtggcagaaagaggccaagattctatttcttggcctagataatgcaggcaagaccacc 654
>gb|DR047805.1|DR047805 RTBOR1_3_E01.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_3_E01_A029 5', mRNA sequence
Length = 632
Score = 48.1 bits (24), Expect = 9e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 194 ctgtggcagaaggaggctaagatcctcttccttggcctcgacaacgccggcaagaccacc 253
||||||||||| ||||| ||||| || || |||||||| || || || ||||||||||||
Sbjct: 236 ctgtggcagaaagaggccaagattctatttcttggcctagataatgcaggcaagaccacc 295
>gb|DR053344.1|DR053344 RTCA1_10_B11.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_10_B11_A029 5', mRNA sequence
Length = 672
Score = 48.1 bits (24), Expect = 9e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 194 ctgtggcagaaggaggctaagatcctcttccttggcctcgacaacgccggcaagaccacc 253
||||||||||| ||||| ||||| || || |||||||| || || || ||||||||||||
Sbjct: 252 ctgtggcagaaagaggccaagattctatttcttggcctagataatgcaggcaagaccacc 311
>gb|DR057516.1|DR057516 RTNIT1_6_F07.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_6_F07_A029 3', mRNA sequence
Length = 857
Score = 48.1 bits (24), Expect = 9e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 194 ctgtggcagaaggaggctaagatcctcttccttggcctcgacaacgccggcaagaccacc 253
||||||||||| ||||| ||||| || || |||||||| || || || ||||||||||||
Sbjct: 23 ctgtggcagaaagaggccaagattctatttcttggcctagataatgcaggcaagaccacc 82
>gb|DR057604.1|DR057604 RTNIT1_6_F07.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_6_F07_A029 5', mRNA sequence
Length = 903
Score = 48.1 bits (24), Expect = 9e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 194 ctgtggcagaaggaggctaagatcctcttccttggcctcgacaacgccggcaagaccacc 253
||||||||||| ||||| ||||| || || |||||||| || || || ||||||||||||
Sbjct: 238 ctgtggcagaaagaggccaagattctatttcttggcctagataatgcaggcaagaccacc 297
>gb|DR079681.1|DR079681 RTFEPL1_12_G11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_12_G11_A029 5', mRNA sequence
Length = 664
Score = 48.1 bits (24), Expect = 9e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 105 cgaagaggaagaggaagaggaagaggag 132
||||||||||||||||||||| ||||||
Sbjct: 639 cgaagaggaagaggaagaggaggaggag 612
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 106 gaagaggaagaggaagaggaagaggag 132
||||| |||||||||||||||||||||
Sbjct: 644 gaagacgaagaggaagaggaagaggag 618
>gb|DR178613.1|DR178613 RTMNUT1_12_G11.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_12_G11_A029 5', mRNA sequence
Length = 744
Score = 48.1 bits (24), Expect = 9e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 194 ctgtggcagaaggaggctaagatcctcttccttggcctcgacaacgccggcaagaccacc 253
||||||||||| ||||| ||||| || || |||||||| || || || ||||||||||||
Sbjct: 37 ctgtggcagaaagaggccaagattctatttcttggcctagataatgcaggcaagaccacc 96
>gb|DR683411.1|DR683411 EST1073487 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAG84 3' end, mRNA sequence
Length = 609
Score = 48.1 bits (24), Expect = 9e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 194 ctgtggcagaaggaggctaagatcctcttccttggcctcgacaacgccggcaagaccacc 253
||||||||||| ||||| ||||| || || |||||||| || || || ||||||||||||
Sbjct: 168 ctgtggcagaaagaggccaagattctatttcttggcctagataatgcaggcaagaccacc 227
>gb|DR683803.1|DR683803 EST1073879 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAL47 3' end, mRNA sequence
Length = 663
Score = 48.1 bits (24), Expect = 9e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 194 ctgtggcagaaggaggctaagatcctcttccttggcctcgacaacgccggcaagaccacc 253
||||||||||| ||||| ||||| || || |||||||| || || || ||||||||||||
Sbjct: 168 ctgtggcagaaagaggccaagattctatttcttggcctagataatgcaggcaagaccacc 227
>gb|DT631650.1|DT631650 EST1146581 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFB15 3' end, mRNA sequence
Length = 749
Score = 48.1 bits (24), Expect = 9e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 194 ctgtggcagaaggaggctaagatcctcttccttggcctcgacaacgccggcaagaccacc 253
||||||||||| ||||| ||||| || || |||||||| || || || ||||||||||||
Sbjct: 292 ctgtggcagaaagaggccaagattctatttcttggcctagataatgcaggcaagaccacc 351
>gb|BX249833.1|BX249833 BX249833 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP029C02, mRNA sequence
Length = 680
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 194 ctgtggcagaaggaggctaagatcctcttccttggcctcgacaacgccggcaagaccac 252
||||||||||| ||||| ||||| || || |||||||| || || || |||||||||||
Sbjct: 414 ctgtggcagaaagaggccaagattctatttcttggcctagataatgcaggcaagaccac 472
>gb|BE496257.1|BE496257 NXCI_012_H04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_012_H04 5', mRNA sequence
Length = 336
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 106 gaagaggaagaggaagaggaaga 128
|||||||||||||||||||||||
Sbjct: 255 gaagaggaagaggaagaggaaga 233
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 112 gaagaggaagaggaagagga 131
||||||||||||||||||||
Sbjct: 255 gaagaggaagaggaagagga 236
>gb|BQ701276.1|BQ701276 NXSI_061_F07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_061_F07 5', mRNA sequence
Length = 409
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 106 gaagaggaagaggaagaggaaga 128
|||||||||||||||||||||||
Sbjct: 165 gaagaggaagaggaagaggaaga 143
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 112 gaagaggaagaggaagagga 131
||||||||||||||||||||
Sbjct: 165 gaagaggaagaggaagagga 146
>gb|DR012578.1|DR012578 HEAT1_13_F03.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_13_F03_A029 5', mRNA sequence
Length = 723
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 106 gaagaggaagaggaagaggaaga 128
|||||||||||||||||||||||
Sbjct: 286 gaagaggaagaggaagaggaaga 264
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 112 gaagaggaagaggaagagga 131
||||||||||||||||||||
Sbjct: 286 gaagaggaagaggaagagga 267
>gb|CF390127.1|CF390127 RTDR2_12_F05.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_12_F05_A021 5', mRNA
sequence
Length = 641
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 gaagaggaagaggaagaggaagagga 131
|||||||||||||| |||||||||||
Sbjct: 472 gaagaggaagaggaggaggaagagga 497
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 gaagaggaagaggaagaggaagagga 131
|||||||||||||||||||| |||||
Sbjct: 466 gaagaggaagaggaagaggaggagga 491
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 112 gaagaggaagaggaagaggag 132
|||||||||||||||||||||
Sbjct: 466 gaagaggaagaggaagaggag 486
>gb|CF667690.1|CF667690 RTCNT1_31_H12.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_31_H12_A029 5', mRNA sequence
Length = 741
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 gaagaggaagaggaagaggaagagga 131
||||||||||| ||||||||||||||
Sbjct: 659 gaagaggaagaagaagaggaagagga 684
>gb|CO158218.1|CO158218 FLD1_5_A04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_5_A04_A029 5', mRNA sequence
Length = 604
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 gaagaggaagaggaagaggaagagga 131
|||||||||||||| |||||||||||
Sbjct: 367 gaagaggaagaggaggaggaagagga 392
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 gaagaggaagaggaagaggaagagga 131
|||||||||||||||||||| |||||
Sbjct: 361 gaagaggaagaggaagaggaggagga 386
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 112 gaagaggaagaggaagaggag 132
|||||||||||||||||||||
Sbjct: 361 gaagaggaagaggaagaggag 381
>gb|CO361133.1|CO361133 NDL2_3_A10.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_3_A10_A029 3', mRNA sequence
Length = 850
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 gaagaggaagaggaagaggaagagga 131
||||||||||| ||||||||||||||
Sbjct: 300 gaagaggaagaagaagaggaagagga 325
>gb|CO361209.1|CO361209 NDL2_3_A10.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_3_A10_A029 5', mRNA sequence
Length = 835
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 gaagaggaagaggaagaggaagagga 131
||||||||||| ||||||||||||||
Sbjct: 673 gaagaggaagaagaagaggaagagga 698
>gb|DN614758.1|DN614758 EST967808 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAC780, mRNA sequence
Length = 479
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 gaagaggaagaggaagaggaagagga 131
|||||||||||||| |||||||||||
Sbjct: 399 gaagaggaagaggaggaggaagagga 424
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 gaagaggaagaggaagaggaagagga 131
|||||||||||||||||||| |||||
Sbjct: 393 gaagaggaagaggaagaggaggagga 418
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 112 gaagaggaagaggaagaggag 132
|||||||||||||||||||||
Sbjct: 393 gaagaggaagaggaagaggag 413
>gb|DR057639.1|DR057639 RTNIT1_7_A07.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_7_A07_A029 3', mRNA sequence
Length = 896
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 gaagaggaagaggaagaggaagagga 131
|||||||||||||| |||||||||||
Sbjct: 200 gaagaggaagaggaggaggaagagga 225
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 gaagaggaagaggaagaggaagagga 131
|||||||||||||||||||| |||||
Sbjct: 194 gaagaggaagaggaagaggaggagga 219
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 112 gaagaggaagaggaagaggag 132
|||||||||||||||||||||
Sbjct: 194 gaagaggaagaggaagaggag 214
>gb|DR060159.1|DR060159 RTNIT1_26_C09.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_26_C09_A029 3', mRNA sequence
Length = 781
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 112 gaagaggaagaggaagaggagc 133
||||||||||||||||||||||
Sbjct: 460 gaagaggaagaggaagaggagc 439
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 106 gaagaggaagaggaagagga 125
||||||||||||||||||||
Sbjct: 460 gaagaggaagaggaagagga 441
>gb|DR164120.1|DR164120 RTFE1_47_A01.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_47_A01_A029 3', mRNA sequence
Length = 808
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 106 gaagaggaagaggaagaggaagagga 131
||||||||||| ||||||||||||||
Sbjct: 101 gaagaggaagaagaagaggaagagga 76
>gb|DR164196.1|DR164196 RTFE1_47_A01.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_47_A01_A029 5', mRNA sequence
Length = 776
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 106 gaagaggaagaggaagaggaagagga 131
||||||||||| ||||||||||||||
Sbjct: 532 gaagaggaagaagaagaggaagagga 507
>gb|DT629301.1|DT629301 EST1155871 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD782 5' end, mRNA sequence
Length = 479
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 106 gaagaggaagaggaagaggaagagga 131
|||||||||||||||||||| |||||
Sbjct: 87 gaagaggaagaggaagaggaggagga 62
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 106 gaagaggaagaggaagaggaagagga 131
|||||||||||||| |||||||||||
Sbjct: 81 gaagaggaagaggaggaggaagagga 56
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 112 gaagaggaagaggaagaggag 132
|||||||||||||||||||||
Sbjct: 87 gaagaggaagaggaagaggag 67
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence
Length = 119707
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 106 gaagaggaagaggaagaggaagagga 131
||||||||||||||||| ||||||||
Sbjct: 115104 gaagaggaagaggaagacgaagagga 115079
>ref|NC_001631.1| Pinus thunbergii chloroplast, complete genome
Length = 119707
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 106 gaagaggaagaggaagaggaagagga 131
||||||||||||||||| ||||||||
Sbjct: 115104 gaagaggaagaggaagacgaagagga 115079
>gb|CF386181.1|CF386181 RTDR1_8_C10.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_8_C10_A015 5', mRNA
sequence
Length = 566
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 108 agaggaagaggaagaggaaga 128
|||||||||||||||||||||
Sbjct: 229 agaggaagaggaagaggaaga 249
>gb|CF401195.1|CF401195 RTWW1_10_E01.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_10_E01_A015 5', mRNA sequence
Length = 705
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 108 agaggaagaggaagaggaaga 128
|||||||||||||||||||||
Sbjct: 388 agaggaagaggaagaggaaga 408
>gb|CO163312.1|CO163312 FLD1_40_F11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_F11_A029 5', mRNA sequence
Length = 862
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 895 tctcttctgattgtttcttgg 915
|||||||||||||||||||||
Sbjct: 767 tctcttctgattgtttcttgg 747
>gb|DR119352.1|DR119352 RTMG1_22_E12.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_22_E12_A029 5', mRNA sequence
Length = 853
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 108 agaggaagaggaagaggaaga 128
|||||||||||||||||||||
Sbjct: 25 agaggaagaggaagaggaaga 45
>gb|DR384686.1|DR384686 RTHG1_3_H03.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_3_H03_A029 5', mRNA sequence
Length = 815
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 108 agaggaagaggaagaggaaga 128
|||||||||||||||||||||
Sbjct: 193 agaggaagaggaagaggaaga 213
>gb|DR689996.1|DR689996 EST1080082 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACP88 3' end, mRNA sequence
Length = 828
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 895 tctcttctgattgtttcttgg 915
|||||||||||||||||||||
Sbjct: 403 tctcttctgattgtttcttgg 383
>gb|DR692982.1|DR692982 EST1083070 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADS75 3' end, mRNA sequence
Length = 785
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 895 tctcttctgattgtttcttgg 915
|||||||||||||||||||||
Sbjct: 381 tctcttctgattgtttcttgg 361
>gb|DR694913.1|DR694913 EST1085006 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEI33 3' end, mRNA sequence
Length = 749
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 895 tctcttctgattgtttcttgg 915
|||||||||||||||||||||
Sbjct: 527 tctcttctgattgtttcttgg 507
>gb|DT638894.1|DT638894 EST1153825 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHK66 3' end, mRNA sequence
Length = 858
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 895 tctcttctgattgtttcttgg 915
|||||||||||||||||||||
Sbjct: 533 tctcttctgattgtttcttgg 513
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 156,448
Number of Sequences: 355925
Number of extensions: 156448
Number of successful extensions: 53494
Number of sequences better than 0.5: 76
Number of HSP's better than 0.5 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53114
Number of HSP's gapped (non-prelim): 302
length of query: 1231
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1212
effective length of database: 210,514,662
effective search space: 255143770344
effective search space used: 255143770344
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)