BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521919.2.1
(2729 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF396527.1|CF396527 RTDS2_22_D06.g1_A021 Drought-stresse... 139 7e-031
dbj|BD236175.1| Materials and method for modification of pl... 101 1e-019
gb|DR089935.1|DR089935 RTAL1_11_E09.g1_A029 Roots plus adde... 84 3e-014
dbj|BD236172.1| Materials and method for modification of pl... 84 3e-014
dbj|BD236171.1| Materials and method for modification of pl... 64 3e-008
gb|DR088818.1|DR088818 RTAL1_4_F06.g1_A029 Roots plus added... 50 5e-004
gb|AW736876.1|AW736876 NXNV_080_C02_F Nsf Xylem Normal wood... 44 0.030
gb|AW985464.1|AW985464 NXNV_136_H09_F Nsf Xylem Normal wood... 44 0.030
gb|BE241256.1|BE241256 NXNV_183_E01_F Nsf Xylem Normal wood... 44 0.030
gb|CF386659.1|CF386659 RTDR1_16_B05.b1_A015 Loblolly pine r... 44 0.030
gb|CF392330.1|CF392330 RTDR3_7_F10.b1_A022 Loblolly pine ro... 44 0.030
gb|CF669606.1|CF669606 RTCNT1_45_A11.b1_A029 Root control P... 44 0.030
gb|BX680398.1|BX680398 BX680398 RS Pinus pinaster cDNA clon... 44 0.030
gb|BX682146.1|BX682146 BX682146 RS Pinus pinaster cDNA clon... 44 0.030
gb|BX682174.1|BX682174 BX682174 RS Pinus pinaster cDNA clon... 44 0.030
gb|CV034299.1|CV034299 RTNACL1_40_B02.b1_A029 Roots plus ad... 44 0.030
gb|DR048603.1|DR048603 RTBOR1_10_B03.b1_A029 Roots plus add... 44 0.030
gb|DR054080.1|DR054080 RTCA1_15_D02.b1_A029 Roots minus cal... 44 0.030
gb|DR056592.1|DR056592 RTCA1_31_G05.b1_A029 Roots minus cal... 44 0.030
gb|DR057483.1|DR057483 RTNIT1_6_C07.b1_A029 Roots minus nit... 44 0.030
gb|BQ697340.1|BQ697340 NXPV_053_A06_F NXPV (Nsf Xylem Plani... 40 0.47
dbj|BD236173.1| Materials and method for modification of pl... 40 0.47
>gb|CF396527.1|CF396527 RTDS2_22_D06.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_D06_A021 5', mRNA sequence
Length = 633
Score = 139 bits (70), Expect = 7e-031
Identities = 232/286 (81%)
Strand = Plus / Minus
Query: 719 gaaaatctatccattcaggatgtccaaactcatttcccatgaaattaagatagccctctc 778
||||||| |||||||| || |||||||| ||||||||||||||||| ||||| || || |
Sbjct: 633 gaaaatcaatccattctgggtgtccaaattcatttcccatgaaatttagatacccttcac 574
Query: 779 ctcctaaacccattgtgataagtctaatcatcttatgtaatgctatcccacgatcaatgg 838
| |||||||||||||||| ||||| |||||||| || | ||||| |||||||| ||||
Sbjct: 573 cacctaaacccattgtgacaagtcggatcatcttgtgaagagctattccacgatctatgg 514
Query: 839 taggagttgaaggtctatcgagggccatgaaatcatacatatccttgtccatcaaccaaa 898
||||| | ||| ||| || ||||| ||||||||||||||||||||||| | |||||
Sbjct: 513 ctggagtcgcaggctgatcaagtgccataaaatcatacatatccttgtccatgagccaaa 454
Query: 899 acgcaatagtcttgtcgccgactaatgcttgatcatgactttcagcataagttacacact 958
| || || ||||| || ||||| | || ||||||||||| || ||||| |||||| |
Sbjct: 453 aggctattgtcttatcaccgacaagagcctgatcatgactctctgcatatactacacatt 394
Query: 959 tctctaaccacctcctatttgtcagtgtgtgcacaatatcacccat 1004
|||| ||||||| ||||||| ||||| ||||||||||||||
Sbjct: 393 tctcagaccaccttctatttgatagtgtaaatacaatatcacccat 348
Score = 113 bits (57), Expect = 4e-023
Identities = 243/305 (79%)
Strand = Plus / Minus
Query: 1036 tcaatccatttgtcagccacagccatatgcatccgatagtcaaaacctaccccaccatcg 1095
||||||||||||||||| || |||||||| | ||||| ||||| || || || |||||
Sbjct: 313 tcaatccatttgtcagctactgccatatggagtcgataatcaaatcccactccgccatct 254
Query: 1096 tgaacaggaagggcaaatgtaggcattccactaacatcttcaccaatggttacagcctca 1155
|| |||| | | | ||| || ||||| ||||| |||||||| ||||| |||| ||||
Sbjct: 253 tgtacagaacgagaaaaggttggcataccactcacatcttctccaattgttatggcctgg 194
Query: 1156 ggataaagtccatgaattagatcatttaccagcatcaagtaaaccactgcatctacatcg 1215
||| | || |||||||| | ||||| ||||||||||| |||||||| |||||||||||
Sbjct: 193 ggaaatagaccatgaatcatgtcattaaccagcatcaaataaaccacagcatctacatca 134
Query: 1216 gtggcaaagccaaaatactcattgaagttccccgtaaatgttacttgtaatccgtggtga 1275
|| ||||| ||||| |||||| | ||||| || |||| ||| |||||||| || ||
Sbjct: 133 gtagcaaatccaaagtactcagcataattcccagtgaatgctacctgtaatccatgatgg 74
Query: 1276 gtgtacatcatggaggtcacaccatcaaaacggaaaccatcaaacttatattcctcgagc 1335
||||||||||| || || ||||||||||| | || |||||||| ||||| ||||| | |
Sbjct: 73 gtgtacatcatagatgttacaccatcaaacctaaacccatcaaatttatactcctccaac 14
Query: 1336 cacca 1340
|||||
Sbjct: 13 cacca 9
>dbj|BD236175.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 258
Score = 101 bits (51), Expect = 1e-019
Identities = 201/251 (80%)
Strand = Plus / Minus
Query: 1036 tcaatccatttgtcagccacagccatatgcatccgatagtcaaaacctaccccaccatcg 1095
||||||||||||||||| || |||||||| | ||||| ||||| || || || |||||
Sbjct: 258 tcaatccatttgtcagctactgccatatggagtcgataatcaaatcccactccgccatct 199
Query: 1096 tgaacaggaagggcaaatgtaggcattccactaacatcttcaccaatggttacagcctca 1155
|| |||| | | | ||| || ||||| ||||| |||||||| ||||| |||| ||||
Sbjct: 198 tgtacagaacgagaaaaggttggcataccactcacatcttctccaattgttatggcctgg 139
Query: 1156 ggataaagtccatgaattagatcatttaccagcatcaagtaaaccactgcatctacatcg 1215
||| | || |||||||| | ||||| ||||||||||| |||||||| |||||||||||
Sbjct: 138 ggaaatagaccatgaatcatgtcattaaccagcatcaaataaaccacagcatctacatca 79
Query: 1216 gtggcaaagccaaaatactcattgaagttccccgtaaatgttacttgtaatccgtggtga 1275
|| ||||| ||||| |||||| | ||||| || |||| ||| ||||||||||| ||
Sbjct: 78 gtagcaaatccaaagtactcagcataattcccagtgaatgctacctgtaatccgtgatgg 19
Query: 1276 gtgtacatcat 1286
|||||||||||
Sbjct: 18 gtgtacatcat 8
>gb|DR089935.1|DR089935 RTAL1_11_E09.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_11_E09_A029 5', mRNA sequence
Length = 700
Score = 83.8 bits (42), Expect = 3e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 715 cttggaaaatctatccattcaggatgtccaaactcatttcccatgaaattaagatagccc 774
|||||||| || |||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 470 cttggaaagtcaatccattccggatgaccaaactcatttcccataaaattaagatagccc 411
Query: 775 tc 776
||
Sbjct: 410 tc 409
>dbj|BD236172.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 408
Score = 83.8 bits (42), Expect = 3e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 715 cttggaaaatctatccattcaggatgtccaaactcatttcccatgaaattaagatagccc 774
|||||||| || |||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 160 cttggaaagtcaatccattccggatgaccaaactcatttcccataaaattaagatagccc 101
Query: 775 tc 776
||
Sbjct: 100 tc 99
>dbj|BD236171.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 375
Score = 63.9 bits (32), Expect = 3e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 1948 acacgagatccatgaggaataggtgatgtaccatctgcattgttaggcagaaaaatttcc 2007
|||||||||||||| ||||| |||| | ||||||||||||||| || | ||| || |||
Sbjct: 121 acacgagatccatggggaattggtggagaaccatctgcattgtttggtaaaaatatctcc 62
Query: 2008 caaacaccaaactcatttttgctcatacgatctgcatttggatcccagttgttgaa 2063
|| || |||||||| || || ||||| ||| ||||| |||| ||||||||||||
Sbjct: 61 catactccaaactcgttcttagtcataacatcagcattgggattccagttgttgaa 6
Score = 48.1 bits (24), Expect = 0.002
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 1720 acatatgtgtttatcttcggttccgggctactcattccgacatgtgtttcatatatccgc 1779
|||||||| || || || ||||||| ||| ||||| || ||||| | ||||||||| |||
Sbjct: 349 acatatgtattaattttgggttccgtgctgctcatgccaacatgcgcttcatatattcgc 290
Query: 1780 aatgattt 1787
||||||||
Sbjct: 289 aatgattt 282
>gb|DR088818.1|DR088818 RTAL1_4_F06.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_4_F06_A029 5', mRNA sequence
Length = 638
Score = 50.1 bits (25), Expect = 5e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 874 tacatatccttgtccatcaaccaaaacgcaatagtcttgtcgccgactaatgcttgatca 933
||||| || |||||||||||||| ||||| || |||||||| ||||| | ||||| |||
Sbjct: 444 tacatctctttgtccatcaaccagaacgcgatcgtcttgtcaccgacaagggcttggtca 385
Query: 934 tgact 938
|||||
Sbjct: 384 tgact 380
>gb|AW736876.1|AW736876 NXNV_080_C02_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_080_C02 5', mRNA sequence
Length = 236
Score = 44.1 bits (22), Expect = 0.030
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1445 gtgtatctgtaccatcaaaaccattc 1470
||||| ||||||||||||||||||||
Sbjct: 72 gtgtacctgtaccatcaaaaccattc 47
>gb|AW985464.1|AW985464 NXNV_136_H09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_136_H09 5', mRNA sequence
Length = 507
Score = 44.1 bits (22), Expect = 0.030
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1445 gtgtatctgtaccatcaaaaccattc 1470
||||| ||||||||||||||||||||
Sbjct: 166 gtgtacctgtaccatcaaaaccattc 141
>gb|BE241256.1|BE241256 NXNV_183_E01_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_183_E01 5', mRNA sequence
Length = 562
Score = 44.1 bits (22), Expect = 0.030
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1445 gtgtatctgtaccatcaaaaccattc 1470
||||| ||||||||||||||||||||
Sbjct: 72 gtgtacctgtaccatcaaaaccattc 47
>gb|CF386659.1|CF386659 RTDR1_16_B05.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_16_B05_A015 3', mRNA
sequence
Length = 611
Score = 44.1 bits (22), Expect = 0.030
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1445 gtgtatctgtaccatcaaaaccattc 1470
||||| ||||||||||||||||||||
Sbjct: 29 gtgtacctgtaccatcaaaaccattc 4
>gb|CF392330.1|CF392330 RTDR3_7_F10.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_7_F10_A022 3', mRNA sequence
Length = 588
Score = 44.1 bits (22), Expect = 0.030
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1445 gtgtatctgtaccatcaaaaccattc 1470
||||| ||||||||||||||||||||
Sbjct: 81 gtgtacctgtaccatcaaaaccattc 56
>gb|CF669606.1|CF669606 RTCNT1_45_A11.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_45_A11_A029 3', mRNA sequence
Length = 556
Score = 44.1 bits (22), Expect = 0.030
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1445 gtgtatctgtaccatcaaaaccattc 1470
||||| ||||||||||||||||||||
Sbjct: 49 gtgtacctgtaccatcaaaaccattc 24
>gb|BX680398.1|BX680398 BX680398 RS Pinus pinaster cDNA clone RS42H06, mRNA sequence
Length = 619
Score = 44.1 bits (22), Expect = 0.030
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1445 gtgtatctgtaccatcaaaaccattc 1470
||||| ||||||||||||||||||||
Sbjct: 64 gtgtacctgtaccatcaaaaccattc 39
>gb|BX682146.1|BX682146 BX682146 RS Pinus pinaster cDNA clone RS72A03, mRNA sequence
Length = 429
Score = 44.1 bits (22), Expect = 0.030
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1445 gtgtatctgtaccatcaaaaccattc 1470
||||| ||||||||||||||||||||
Sbjct: 240 gtgtacctgtaccatcaaaaccattc 215
>gb|BX682174.1|BX682174 BX682174 RS Pinus pinaster cDNA clone RS73A03, mRNA sequence
Length = 568
Score = 44.1 bits (22), Expect = 0.030
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1445 gtgtatctgtaccatcaaaaccattc 1470
||||| ||||||||||||||||||||
Sbjct: 252 gtgtacctgtaccatcaaaaccattc 227
>gb|CV034299.1|CV034299 RTNACL1_40_B02.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_40_B02_A029 3', mRNA sequence
Length = 832
Score = 44.1 bits (22), Expect = 0.030
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1445 gtgtatctgtaccatcaaaaccattc 1470
||||| ||||||||||||||||||||
Sbjct: 223 gtgtacctgtaccatcaaaaccattc 198
>gb|DR048603.1|DR048603 RTBOR1_10_B03.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_10_B03_A029 3', mRNA sequence
Length = 760
Score = 44.1 bits (22), Expect = 0.030
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1445 gtgtatctgtaccatcaaaaccattc 1470
||||| ||||||||||||||||||||
Sbjct: 276 gtgtacctgtaccatcaaaaccattc 251
>gb|DR054080.1|DR054080 RTCA1_15_D02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_15_D02_A029 3', mRNA sequence
Length = 539
Score = 44.1 bits (22), Expect = 0.030
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1445 gtgtatctgtaccatcaaaaccattc 1470
||||| ||||||||||||||||||||
Sbjct: 35 gtgtacctgtaccatcaaaaccattc 10
>gb|DR056592.1|DR056592 RTCA1_31_G05.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_31_G05_A029 3', mRNA sequence
Length = 629
Score = 44.1 bits (22), Expect = 0.030
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1445 gtgtatctgtaccatcaaaaccattc 1470
||||| ||||||||||||||||||||
Sbjct: 145 gtgtacctgtaccatcaaaaccattc 120
>gb|DR057483.1|DR057483 RTNIT1_6_C07.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_6_C07_A029 3', mRNA sequence
Length = 856
Score = 44.1 bits (22), Expect = 0.030
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1445 gtgtatctgtaccatcaaaaccattc 1470
||||| ||||||||||||||||||||
Sbjct: 380 gtgtacctgtaccatcaaaaccattc 355
>gb|BQ697340.1|BQ697340 NXPV_053_A06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_053_A06 5', mRNA sequence
Length = 240
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 625 gcatcacccaggtcaaatct 644
||||||||||||||||||||
Sbjct: 86 gcatcacccaggtcaaatct 105
>dbj|BD236173.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 476
Score = 40.1 bits (20), Expect = 0.47
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1294 acaccatcaaaacggaaaccatcaaact 1321
||||||||||| |||||||| |||||||
Sbjct: 451 acaccatcaaagcggaaaccgtcaaact 424
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 292,323
Number of Sequences: 355925
Number of extensions: 292323
Number of successful extensions: 82078
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82038
Number of HSP's gapped (non-prelim): 34
length of query: 2729
length of database: 217,277,237
effective HSP length: 20
effective length of query: 2709
effective length of database: 210,158,737
effective search space: 569320018533
effective search space used: 569320018533
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)