BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521865.2.1
(638 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF664834.1|CF664834 RTCNT1_12_F03.b1_A029 Root control P... 96 2e-018
gb|DR059112.1|DR059112 RTNIT1_15_F05.g1_A029 Roots minus ni... 86 2e-015
gb|DR110850.1|DR110850 RTS1_13_A01.g1_A029 Roots minus sulf... 86 2e-015
gb|DR741980.1|DR741980 RTCU1_1_A06.b1_A029 Roots plus added... 86 2e-015
gb|DR109828.1|DR109828 RTS1_5_F07.b1_A029 Roots minus sulfu... 82 3e-014
gb|DR101537.1|DR101537 STRR1_74_B05.b1_A033 Stem Response R... 80 1e-013
gb|DR160314.1|DR160314 RTFE1_5_F12.b1_A029 Roots minus iron... 80 1e-013
gb|CF478957.1|CF478957 RTWW3_21_C10.b1_A022 Well-watered lo... 56 2e-006
gb|CO162271.1|CO162271 FLD1_34_F09.b1_A029 Root flooded Pin... 56 2e-006
gb|CO162352.1|CO162352 FLD1_34_F09.g1_A029 Root flooded Pin... 56 2e-006
gb|DR011092.1|DR011092 HEAT1_3_H07.b1_A029 Root at 37 C for... 56 2e-006
gb|DR023804.1|DR023804 STRS1_60_E01.b1_A034 Shoot tip pitch... 56 2e-006
gb|DR388885.1|DR388885 RTHG1_31_C03.b1_A029 Roots plus adde... 56 2e-006
gb|CF478251.1|CF478251 RTWW3_18_C07.b1_A022 Well-watered lo... 54 7e-006
gb|CF664918.1|CF664918 RTCNT1_12_F03.g1_A029 Root control P... 44 0.007
>gb|CF664834.1|CF664834 RTCNT1_12_F03.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_12_F03_A029 3', mRNA sequence
Length = 637
Score = 95.6 bits (48), Expect = 2e-018
Identities = 129/156 (82%)
Strand = Plus / Plus
Query: 200 tggcactcaactgttggtcaatgggcacggatagagaatatgactatcctgggggaggat 259
|||||||| ||||||||||||||||| || | || || ||||| || |||||||||||
Sbjct: 116 tggcactctactgttggtcaatgggctcgcgttgaaaacatgacaatattgggggaggat 175
Query: 260 gttcatgtgtgtgatgaggtgtacagcaatggcggtgttgttctcccacataaagagatc 319
|| ||||| | ||||||||| |||| |||||| ||||| || || || |||||||| |||
Sbjct: 176 gtccatgtttctgatgaggtatacaccaatggaggtgtggtccttcctcataaagaaatc 235
Query: 320 aagtcaagcattctgaagcctgagatcgtcatgtga 355
|| || |||||||| ||||| || || |||||||||
Sbjct: 236 aaatccagcattctcaagccagaaattgtcatgtga 271
>gb|DR059112.1|DR059112 RTNIT1_15_F05.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_15_F05_A029 5', mRNA sequence
Length = 716
Score = 85.7 bits (43), Expect = 2e-015
Identities = 157/195 (80%)
Strand = Plus / Minus
Query: 161 atcaagaagcatgcttgcatctcaaacagcattatcggctggcactcaactgttggtcaa 220
|||||||||||||| || ||||| ||||| | |||||||| ||||| ||||| ||
Sbjct: 261 atcaagaagcatgcctgtgtctcatggagcatagttggctggcattcaacagttggacag 202
Query: 221 tgggcacggatagagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggtg 280
||||| || ||||||||||||||| | || |||||||| ||| | |||||||| |
Sbjct: 201 tgggctagggcagagaatatgactattttaggtgaggatgtacatataagtgatgagata 142
Query: 281 tacagcaatggcggtgttgttctcccacataaagagatcaagtcaagcattctgaagcct 340
||||| ||||| ||||| || || || |||||||||||||| || | |||||| ||||||
Sbjct: 141 tacagtaatggtggtgtggtgctacctcataaagagatcaaatctaacattctcaagcct 82
Query: 341 gagatcgtcatgtga 355
||||| |||||||||
Sbjct: 81 gagattgtcatgtga 67
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 56 attggagaaggttgtctgattggtcctgatgt 87
||||| ||||| ||||||||||||||||||||
Sbjct: 366 attggggaaggctgtctgattggtcctgatgt 335
>gb|DR110850.1|DR110850 RTS1_13_A01.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_13_A01_A029 5', mRNA sequence
Length = 665
Score = 85.7 bits (43), Expect = 2e-015
Identities = 157/195 (80%)
Strand = Plus / Minus
Query: 161 atcaagaagcatgcttgcatctcaaacagcattatcggctggcactcaactgttggtcaa 220
|||||||||||||| || ||||| ||||| | |||||||| ||||| ||||| ||
Sbjct: 316 atcaagaagcatgcctgtgtctcatggagcatagttggctggcattcaacagttggacag 257
Query: 221 tgggcacggatagagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggtg 280
||||| || ||||||||||||||| | || |||||||| ||| | |||||||| |
Sbjct: 256 tgggctagggcagagaatatgactattttaggtgaggatgtacatataagtgatgagata 197
Query: 281 tacagcaatggcggtgttgttctcccacataaagagatcaagtcaagcattctgaagcct 340
||||| ||||| ||||| || || || |||||||||||||| || | |||||| ||||||
Sbjct: 196 tacagtaatggtggtgtggtgctacctcataaagagatcaaatctaacattctcaagcct 137
Query: 341 gagatcgtcatgtga 355
||||| |||||||||
Sbjct: 136 gagattgtcatgtga 122
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 56 attggagaaggttgtctgattggtcctgatgt 87
||||| ||||| ||||||||||||||||||||
Sbjct: 421 attggggaaggctgtctgattggtcctgatgt 390
>gb|DR741980.1|DR741980 RTCU1_1_A06.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_1_A06_A029 3', mRNA sequence
Length = 557
Score = 85.7 bits (43), Expect = 2e-015
Identities = 157/195 (80%)
Strand = Plus / Plus
Query: 161 atcaagaagcatgcttgcatctcaaacagcattatcggctggcactcaactgttggtcaa 220
|||||||||||||| || ||||| ||||| | |||||||| ||||| ||||| ||
Sbjct: 211 atcaagaagcatgcctgtgtctcatggagcatagttggctggcattcaacagttggacag 270
Query: 221 tgggcacggatagagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggtg 280
||||| || ||||||||||||||| | || |||||||| ||| | |||||||| |
Sbjct: 271 tgggctagggcagagaatatgactattttaggtgaggatgtacatataagtgatgagata 330
Query: 281 tacagcaatggcggtgttgttctcccacataaagagatcaagtcaagcattctgaagcct 340
||||| ||||| ||||| || || || |||||||||||||| || | |||||| ||||||
Sbjct: 331 tacagtaatggtggtgtggtgctacctcataaagagatcaaatctaacattctcaagcct 390
Query: 341 gagatcgtcatgtga 355
||||| |||||||||
Sbjct: 391 gagattgtcatgtga 405
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 56 attggagaaggttgtctgattggtcctgatgt 87
||||| ||||| ||||||||||||||||||||
Sbjct: 106 attggggaaggctgtctgattggtcctgatgt 137
>gb|DR109828.1|DR109828 RTS1_5_F07.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_5_F07_A029 3', mRNA sequence
Length = 584
Score = 81.8 bits (41), Expect = 3e-014
Identities = 89/105 (84%)
Strand = Plus / Plus
Query: 251 ggggaggatgttcatgtgtgtgatgaggtgtacagcaatggcggtgttgttctcccacat 310
||||||||||| ||||| | ||||||||| ||||||||||| ||||| || || || |||
Sbjct: 14 ggggaggatgtccatgtttctgatgaggtatacagcaatggaggtgtggtccttcctcat 73
Query: 311 aaagagatcaagtcaagcattctgaagcctgagatcgtcatgtga 355
||||| ||||| || |||||||| ||||| || || |||||||||
Sbjct: 74 aaagaaatcaaatccagcattctcaagccagaaattgtcatgtga 118
>gb|DR101537.1|DR101537 STRR1_74_B05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_74_B05_A033 3', mRNA sequence
Length = 858
Score = 79.8 bits (40), Expect = 1e-013
Identities = 127/156 (81%)
Strand = Plus / Plus
Query: 200 tggcactcaactgttggtcaatgggcacggatagagaatatgactatcctgggggaggat 259
||||| || |||||||| |||||||| || | || || ||||| || |||||||||||
Sbjct: 341 tggcattctactgttggccaatgggctcgcgttgaaaacatgacaatattgggggaggat 400
Query: 260 gttcatgtgtgtgatgaggtgtacagcaatggcggtgttgttctcccacataaagagatc 319
|| ||||| | ||||||||| ||||||||||| ||||| || || || |||||||| |||
Sbjct: 401 gtccatgtttctgatgaggtatacagcaatggaggtgtggtccttcctcataaagaaatc 460
Query: 320 aagtcaagcattctgaagcctgagatcgtcatgtga 355
|| || || ||||| ||||| || || |||||||||
Sbjct: 461 aaatccagtattctcaagccagaaattgtcatgtga 496
>gb|DR160314.1|DR160314 RTFE1_5_F12.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_5_F12_A029 3', mRNA sequence
Length = 734
Score = 79.8 bits (40), Expect = 1e-013
Identities = 127/156 (81%)
Strand = Plus / Plus
Query: 200 tggcactcaactgttggtcaatgggcacggatagagaatatgactatcctgggggaggat 259
||||| || |||||||| |||||||| || | || || ||||| || |||||||||||
Sbjct: 205 tggcattctactgttggccaatgggctcgcgttgaaaacatgacaatattgggggaggat 264
Query: 260 gttcatgtgtgtgatgaggtgtacagcaatggcggtgttgttctcccacataaagagatc 319
|| ||||| | ||||||||| ||||||||||| ||||| || || || |||||||| |||
Sbjct: 265 gtccatgtttctgatgaggtatacagcaatggaggtgtggtccttcctcataaagaaatc 324
Query: 320 aagtcaagcattctgaagcctgagatcgtcatgtga 355
|| || || ||||| ||||| || || |||||||||
Sbjct: 325 aaatccagtattctcaagccagaaattgtcatgtga 360
>gb|CF478957.1|CF478957 RTWW3_21_C10.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_C10_A022 3', mRNA sequence
Length = 733
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 251 ggggaggatgttcatgtgtgtgatgaggtgtacagcaatggcggtgttgttctcccacat 310
||||||||||| ||||| ||||||||||| || |||||||| ||||| || || || |||
Sbjct: 328 ggggaggatgtgcatgtttgtgatgaggtatatagcaatgggggtgtggtgcttccccat 387
Query: 311 aaagagatcaagtcaagcat 330
|| || ||||| || |||||
Sbjct: 388 aaggaaatcaaatccagcat 407
>gb|CO162271.1|CO162271 FLD1_34_F09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_F09_A029 3', mRNA sequence
Length = 705
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 251 ggggaggatgttcatgtgtgtgatgaggtgtacagcaatggcggtgttgttctcccacat 310
||||||||||| ||||| ||||||||||| || |||||||| ||||| || || || |||
Sbjct: 335 ggggaggatgtgcatgtttgtgatgaggtatatagcaatgggggtgtggtgcttccccat 394
Query: 311 aaagagatcaagtcaagcat 330
|| || ||||| || |||||
Sbjct: 395 aaggaaatcaaatccagcat 414
>gb|CO162352.1|CO162352 FLD1_34_F09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_F09_A029 5', mRNA sequence
Length = 826
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 251 ggggaggatgttcatgtgtgtgatgaggtgtacagcaatggcggtgttgttctcccacat 310
||||||||||| ||||| ||||||||||| || |||||||| ||||| || || || |||
Sbjct: 548 ggggaggatgtgcatgtttgtgatgaggtatatagcaatgggggtgtggtgcttccccat 607
Query: 311 aaagagatcaagtcaagcat 330
|| || ||||| || |||||
Sbjct: 608 aaggaaatcaaatccagcat 627
>gb|DR011092.1|DR011092 HEAT1_3_H07.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_3_H07_A029 3', mRNA sequence
Length = 730
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 251 ggggaggatgttcatgtgtgtgatgaggtgtacagcaatggcggtgttgttctcccacat 310
||||||||||| ||||| ||||||||||| || |||||||| ||||| || || || |||
Sbjct: 355 ggggaggatgtgcatgtttgtgatgaggtatatagcaatgggggtgtggtgcttccccat 414
Query: 311 aaagagatcaagtcaagcat 330
|| || ||||| || |||||
Sbjct: 415 aaggaaatcaaatccagcat 434
>gb|DR023804.1|DR023804 STRS1_60_E01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_60_E01_A034 3', mRNA sequence
Length = 830
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 251 ggggaggatgttcatgtgtgtgatgaggtgtacagcaatggcggtgttgttctcccacat 310
||||||||||| ||||| ||||||||||| || |||||||| ||||| || || || |||
Sbjct: 483 ggggaggatgtgcatgtttgtgatgaggtatatagcaatgggggtgtggtgcttccccat 542
Query: 311 aaagagatcaagtcaagcat 330
|| || ||||| || |||||
Sbjct: 543 aaggaaatcaaatccagcat 562
>gb|DR388885.1|DR388885 RTHG1_31_C03.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_31_C03_A029 3', mRNA sequence
Length = 793
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 251 ggggaggatgttcatgtgtgtgatgaggtgtacagcaatggcggtgttgttctcccacat 310
||||||||||| ||||| ||||||||||| || |||||||| ||||| || || || |||
Sbjct: 188 ggggaggatgtgcatgtttgtgatgaggtatatagcaatgggggtgtggtgcttccccat 129
Query: 311 aaagagatcaagtcaagcat 330
|| || ||||| || |||||
Sbjct: 128 aaggaaatcaaatccagcat 109
>gb|CF478251.1|CF478251 RTWW3_18_C07.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_18_C07_A022 3', mRNA sequence
Length = 573
Score = 54.0 bits (27), Expect = 7e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 251 ggggaggatgttcatgtgtgtgatgaggtgtacagcaatggcggtgt 297
||||||||||| ||||| ||||||||||| || |||||||| |||||
Sbjct: 225 ggggaggatgtgcatgtttgtgatgaggtatatagcaatgggggtgt 271
>gb|CF664918.1|CF664918 RTCNT1_12_F03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_12_F03_A029 5', mRNA sequence
Length = 552
Score = 44.1 bits (22), Expect = 0.007
Identities = 71/86 (82%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 200 tggcactcaactgttggtcaa-tgggcacggatagagaatatgactatcctgggggagga 258
|||||||| |||||||||||| ||||| || | || || ||||| || ||||||||||
Sbjct: 467 tggcactctactgttggtcaaatgggctcgcgttgaaaacatgacaatattgggggagga 526
Query: 259 tgttcatgtgtgtgatgaggtgtaca 284
||| ||||| | ||||||||| ||||
Sbjct: 527 tgtccatgtttctgatgaggtataca 552
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 73,060
Number of Sequences: 355925
Number of extensions: 73060
Number of successful extensions: 18381
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18358
Number of HSP's gapped (non-prelim): 21
length of query: 638
length of database: 217,277,237
effective HSP length: 19
effective length of query: 619
effective length of database: 210,514,662
effective search space: 130308575778
effective search space used: 130308575778
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)