BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521686.2.1
(2104 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV136864.1|CV136864 EST848073 Sequencing ESTs from loblo... 42 0.091
gb|CV143253.1|CV143253 EST854462 Sequencing ESTs from loblo... 42 0.091
gb|CV144252.1|CV144252 EST855461 Sequencing ESTs from loblo... 42 0.091
gb|DT624610.1|DT624610 EST1158945 Sequencing ESTs from lobl... 42 0.091
gb|AA556941.1|AA556941 783 Loblolly pine C Pinus taeda cDNA... 40 0.36
gb|AI812771.1|AI812771 18H4 Pine Lambda Zap Xylem library P... 40 0.36
gb|AI812842.1|AI812842 20F6 Pine Lambda Zap Xylem library P... 40 0.36
gb|AW042602.1|AW042602 ST23G12 Pine TriplEx shoot tip libra... 40 0.36
gb|BX251949.1|BX251949 BX251949 Pinus pinaster differenciat... 40 0.36
gb|BX252744.1|BX252744 BX252744 Pinus pinaster differenciat... 40 0.36
gb|BX252751.1|BX252751 BX252751 Pinus pinaster differenciat... 40 0.36
gb|BX254863.1|BX254863 BX254863 Pinus pinaster differenciat... 40 0.36
gb|BX254943.1|BX254943 BX254943 Pinus pinaster differenciat... 40 0.36
gb|AW888069.1|AW888069 NXNV_126_H07_F Nsf Xylem Normal wood... 40 0.36
gb|BE187484.1|BE187484 NXNV_98_G10_F Nsf Xylem Normal wood ... 40 0.36
gb|BE241204.1|BE241204 NXNV_180_D03_F Nsf Xylem Normal wood... 40 0.36
gb|BF049678.1|BF049678 NXCI_109_C08_F NXCI (Nsf Xylem Compr... 40 0.36
gb|BF221256.1|BF221256 NXCI_156_F01_F NXCI (Nsf Xylem Compr... 40 0.36
gb|BF609556.1|BF609556 NXSI_046_B06_F NXSI (Nsf Xylem Side ... 40 0.36
gb|BF610527.1|BF610527 NXSI_059_F06_F NXSI (Nsf Xylem Side ... 40 0.36
gb|BF777569.1|BF777569 NXSI_070_A12_F NXSI (Nsf Xylem Side ... 40 0.36
gb|BF778666.1|BF778666 NXSI_090_D08_F NXSI (Nsf Xylem Side ... 40 0.36
gb|BG039758.1|BG039758 NXSI_103_F12_F NXSI (Nsf Xylem Side ... 40 0.36
gb|BG040113.1|BG040113 NXSI_106_F02_F NXSI (Nsf Xylem Side ... 40 0.36
gb|BG275289.1|BG275289 NXSI_142_A01_F NXSI (Nsf Xylem Side ... 40 0.36
gb|BG275454.1|BG275454 NXSI_139_A03_F NXSI (Nsf Xylem Side ... 40 0.36
gb|BG275516.1|BG275516 NXSI_139_E05_F NXSI (Nsf Xylem Side ... 40 0.36
gb|BG275633.1|BG275633 NXSI_144_B02_F NXSI (Nsf Xylem Side ... 40 0.36
gb|BG276019.1|BG276019 NXSI_147_E12_F NXSI (Nsf Xylem Side ... 40 0.36
gb|BQ699307.1|BQ699307 NXRV126_A09_F NXRV (Nsf Xylem Root w... 40 0.36
gb|BQ699741.1|BQ699741 NXRV128_C09_F NXRV (Nsf Xylem Root w... 40 0.36
gb|BQ701255.1|BQ701255 NXSI_061_D08_F NXSI (Nsf Xylem Side ... 40 0.36
gb|BQ702414.1|BQ702414 NXSI_128_D03_F NXSI (Nsf Xylem Side ... 40 0.36
gb|CF387281.1|CF387281 RTDR1_11_A09.g1_A015 Loblolly pine r... 40 0.36
gb|CF387741.1|CF387741 RTDR1_19_A10.g1_A015 Loblolly pine r... 40 0.36
gb|CF389425.1|CF389425 RTDR2_7_E10.g1_A021 Loblolly pine ro... 40 0.36
gb|CF395486.1|CF395486 RTDS2_11_B10.g1_A021 Drought-stresse... 40 0.36
gb|CF395618.1|CF395618 RTDS2_12_H02.g1_A021 Drought-stresse... 40 0.36
gb|CF398102.1|CF398102 RTDS3_21_C08.b1_A022 Drought-stresse... 40 0.36
gb|CF398799.1|CF398799 RTDS3_16_E11.b1_A022 Drought-stresse... 40 0.36
gb|CF399422.1|CF399422 RTDS3_28_D06.g1_A022 Drought-stresse... 40 0.36
gb|CF399839.1|CF399839 RTWW1_1_H11.g1_A015 Well-watered lob... 40 0.36
gb|CF400053.1|CF400053 RTWW1_2_B07.g1_A015 Well-watered lob... 40 0.36
gb|CF400856.1|CF400856 RTWW1_8_G10.g1_A015 Well-watered lob... 40 0.36
gb|CF401178.1|CF401178 RTWW1_10_F06.g1_A015 Well-watered lo... 40 0.36
gb|CF402046.1|CF402046 RTWW1_16_D12.g1_A015 Well-watered lo... 40 0.36
gb|CF402326.1|CF402326 RTWW1_19_E10.g1_A015 Well-watered lo... 40 0.36
gb|CF402889.1|CF402889 RTWW1_23_D03.g1_A015 Well-watered lo... 40 0.36
gb|CF402941.1|CF402941 RTWW1_23_C03.g1_A015 Well-watered lo... 40 0.36
gb|CF470481.1|CF470481 RTDS1_17_C04.g1_A015 Drought-stresse... 40 0.36
gb|CF471315.1|CF471315 RTDS1_2_D09.g1_A015 Drought-stressed... 40 0.36
gb|CF471924.1|CF471924 RTDS1_7_G12.g1_A015 Drought-stressed... 40 0.36
gb|CF473126.1|CF473126 RTDS1_1_A10.g1_A015 Drought-stressed... 40 0.36
gb|CF473580.1|CF473580 RTWW2_3_G09.g1_A021 Well-watered lob... 40 0.36
gb|CF476104.1|CF476104 RTWW2_21_H07.b1_A021 Well-watered lo... 40 0.36
gb|CF476197.1|CF476197 RTWW2_21_B01.g1_A021 Well-watered lo... 40 0.36
gb|CF476223.1|CF476223 RTWW2_21_H07.g1_A021 Well-watered lo... 40 0.36
gb|CF477426.1|CF477426 RTWW3_7_H02.g1_A022 Well-watered lob... 40 0.36
gb|CF664502.1|CF664502 RTCNT1_10_E07.b1_A029 Root control P... 40 0.36
gb|CF664576.1|CF664576 RTCNT1_10_E07.g1_A029 Root control P... 40 0.36
gb|CF669355.1|CF669355 RTCNT1_42_F10.g1_A029 Root control P... 40 0.36
gb|CF670004.1|CF670004 RTCNT1_47_B04.g1_A029 Root control P... 40 0.36
gb|CO158422.1|CO158422 FLD1_6_G03.g1_A029 Root flooded Pinu... 40 0.36
gb|CO160429.1|CO160429 FLD1_20_H12.g1_A029 Root flooded Pin... 40 0.36
gb|CO161408.1|CO161408 FLD1_28_D03.g1_A029 Root flooded Pin... 40 0.36
gb|CO172000.1|CO172000 NDL1_26_H11.b1_A029 Needles control ... 40 0.36
gb|CO198126.1|CO198126 GEO1_11_A08.g1_A029 Root gravitropis... 40 0.36
gb|CO199878.1|CO199878 GEO2_4_C04.b1_A032 Root gravitropism... 40 0.36
gb|CO199955.1|CO199955 GEO2_4_C04.g1_A032 Root gravitropism... 40 0.36
gb|CO368135.1|CO368135 RTK1_38_G08.g1_A029 Roots minus pota... 40 0.36
gb|CO369202.1|CO369202 RTK1_45_D02.g1_A029 Roots minus pota... 40 0.36
gb|CV032008.1|CV032008 RTNACL1_5_D05.b1_A029 Roots plus add... 40 0.36
gb|CX645269.1|CX645269 COLD1_1_C08.g1_A029 Root cold Pinus ... 40 0.36
gb|CX648337.1|CX648337 COLD1_28_B08.b1_A029 Root cold Pinus... 40 0.36
gb|CX650723.1|CX650723 COLD1_47_E04.g1_A029 Root cold Pinus... 40 0.36
gb|CX714349.1|CX714349 RTPQ1_20_G01.g1_A032 Roots treated w... 40 0.36
gb|DR010779.1|DR010779 HEAT1_1_F06.b1_A029 Root at 37 C for... 40 0.36
gb|DR010857.1|DR010857 HEAT1_1_F06.g1_A029 Root at 37 C for... 40 0.36
gb|DR020355.1|DR020355 STRS1_36_H06.b1_A034 Shoot tip pitch... 40 0.36
gb|DR020425.1|DR020425 STRS1_36_H06.g1_A034 Shoot tip pitch... 40 0.36
gb|DR022465.1|DR022465 STRS1_51_F01.b1_A034 Shoot tip pitch... 40 0.36
gb|DR022529.1|DR022529 STRS1_51_F01.g1_A034 Shoot tip pitch... 40 0.36
gb|DR023030.1|DR023030 STRS1_55_B12.b1_A034 Shoot tip pitch... 40 0.36
gb|DR023109.1|DR023109 STRS1_55_B12.g1_A034 Shoot tip pitch... 40 0.36
gb|DR053466.1|DR053466 RTCA1_11_G10.b1_A029 Roots minus cal... 40 0.36
gb|DR069623.1|DR069623 RTDK1_8_H09.b1_A029 Roots, dark Pinu... 40 0.36
gb|DR069742.1|DR069742 RTDK1_9_D10.b1_A029 Roots, dark Pinu... 40 0.36
gb|DR077974.1|DR077974 RTFEPL1_1_D06.b1_A029 Roots plus add... 40 0.36
gb|DR077997.1|DR077997 RTFEPL1_1_G01.b1_A029 Roots plus add... 40 0.36
gb|DR078053.1|DR078053 RTFEPL1_1_D06.g1_A029 Roots plus add... 40 0.36
gb|DR078079.1|DR078079 RTFEPL1_1_G01.g1_A029 Roots plus add... 40 0.36
gb|DR095332.1|DR095332 STRR1_20_H02.b1_A033 Stem Response R... 40 0.36
gb|DR097597.1|DR097597 STRR1_35_F09.g4_A033 Stem Response R... 40 0.36
gb|DR098259.1|DR098259 STRR1_40_E06.b1_A033 Stem Response R... 40 0.36
gb|DR098329.1|DR098329 STRR1_40_E06.g1_A033 Stem Response R... 40 0.36
gb|DR099653.1|DR099653 STRR1_57_D07.b1_A033 Stem Response R... 40 0.36
gb|DR099765.1|DR099765 STRR1_58_G09.b1_A033 Stem Response R... 40 0.36
gb|DR101584.1|DR101584 STRR1_74_H05.b1_A033 Stem Response R... 40 0.36
gb|DR101658.1|DR101658 STRR1_74_H05.g1_A033 Stem Response R... 40 0.36
gb|DR120850.1|DR120850 RTMG1_32_H05.b1_A029 Roots minus mag... 40 0.36
gb|DR178053.1|DR178053 RTMNUT1_9_B04.b1_A029 Roots minus mi... 40 0.36
gb|DR179407.1|DR179407 RTMNUT1_22_A02.b2_A029 Roots minus m... 40 0.36
gb|DR180812.1|DR180812 RTMNUT1_35_B03.b1_A029 Roots minus m... 40 0.36
gb|DR180889.1|DR180889 RTMNUT1_35_B03.g1_A029 Roots minus m... 40 0.36
gb|DR385097.1|DR385097 RTHG1_6_D02.g1_A029 Roots plus added... 40 0.36
gb|DR388680.1|DR388680 RTHG1_29_G06.g1_A029 Roots plus adde... 40 0.36
gb|DR742942.1|DR742942 RTCU1_8_B04.g2_A029 Roots plus added... 40 0.36
dbj|BD224279.1| Materials and methods for the modification ... 40 0.36
dbj|BD224324.1| Materials and methods for the modification ... 40 0.36
dbj|BD224400.1| Materials and methods for the modification ... 40 0.36
dbj|BD272995.1| Materials and methods for the modification ... 40 0.36
gb|AH014354.1|SEG_AY764801S Pinus taeda isolate 16 cinnamat... 40 0.36
gb|AY764803.1|AY764801S3 Pinus taeda isolate 16 cinnamate 4... 40 0.36
gb|AH014355.1|SEG_AY764805S Pinus taeda isolate 6 cinnamate... 40 0.36
gb|AY764807.1|AY764805S3 Pinus taeda isolate 6 cinnamate 4-... 40 0.36
gb|AH014356.1|SEG_AY764809S Pinus taeda isolate 4 cinnamate... 40 0.36
gb|AY764811.1|AY764809S3 Pinus taeda isolate 4 cinnamate 4-... 40 0.36
gb|AH014357.1|SEG_AY764813S Pinus taeda isolate 26 cinnamat... 40 0.36
gb|AY764815.1|AY764813S3 Pinus taeda isolate 26 cinnamate 4... 40 0.36
gb|AH014358.1|SEG_AY764817S Pinus taeda isolate 9 cinnamate... 40 0.36
gb|AY764819.1|AY764817S3 Pinus taeda isolate 9 cinnamate 4-... 40 0.36
gb|AH014359.1|SEG_AY764821S Pinus taeda isolate 23 cinnamat... 40 0.36
gb|AY764823.1|AY764821S3 Pinus taeda isolate 23 cinnamate 4... 40 0.36
gb|AH014360.1|SEG_AY764825S Pinus taeda isolate 22 cinnamat... 40 0.36
gb|AY764827.1|AY764825S3 Pinus taeda isolate 22 cinnamate 4... 40 0.36
gb|AH014361.1|SEG_AY764829S Pinus taeda isolate 32 cinnamat... 40 0.36
gb|AY764831.1|AY764829S3 Pinus taeda isolate 32 cinnamate 4... 40 0.36
gb|AH014362.1|SEG_AY764833S Pinus taeda isolate 18 cinnamat... 40 0.36
gb|AY764835.1|AY764833S3 Pinus taeda isolate 18 cinnamate 4... 40 0.36
gb|AH014363.1|SEG_AY764837S Pinus taeda isolate 21 cinnamat... 40 0.36
gb|AY764839.1|AY764837S3 Pinus taeda isolate 21 cinnamate 4... 40 0.36
gb|AH014364.1|SEG_AY764841S Pinus taeda isolate 31 cinnamat... 40 0.36
gb|AY764843.1|AY764841S3 Pinus taeda isolate 31 cinnamate 4... 40 0.36
gb|AH014365.1|SEG_AY764845S Pinus taeda isolate 5 cinnamate... 40 0.36
gb|AY764847.1|AY764845S3 Pinus taeda isolate 5 cinnamate 4-... 40 0.36
gb|AH014366.1|SEG_AY764849S Pinus taeda isolate 15 cinnamat... 40 0.36
gb|AY764851.1|AY764849S3 Pinus taeda isolate 15 cinnamate 4... 40 0.36
gb|AH014367.1|SEG_AY764853S Pinus taeda isolate 20 cinnamat... 40 0.36
gb|AY764855.1|AY764853S3 Pinus taeda isolate 20 cinnamate 4... 40 0.36
gb|AH014368.1|SEG_AY764857S Pinus taeda isolate 12 cinnamat... 40 0.36
gb|AY764859.1|AY764857S3 Pinus taeda isolate 12 cinnamate 4... 40 0.36
gb|AH014369.1|SEG_AY764861S Pinus taeda isolate 24 cinnamat... 40 0.36
gb|AY764863.1|AY764861S3 Pinus taeda isolate 24 cinnamate 4... 40 0.36
gb|AH014370.1|SEG_AY764865S Pinus taeda isolate 11 cinnamat... 40 0.36
gb|AY764867.1|AY764865S3 Pinus taeda isolate 11 cinnamate 4... 40 0.36
gb|AH014371.1|SEG_AY764869S Pinus taeda isolate 7 cinnamate... 40 0.36
gb|AY764871.1|AY764869S3 Pinus taeda isolate 7 cinnamate 4-... 40 0.36
gb|AH014372.1|SEG_AY764873S Pinus taeda isolate 25 cinnamat... 40 0.36
gb|AY764875.1|AY764873S3 Pinus taeda isolate 25 cinnamate 4... 40 0.36
gb|AH014373.1|SEG_AY764877S Pinus taeda isolate 13 cinnamat... 40 0.36
gb|AY764879.1|AY764877S3 Pinus taeda isolate 13 cinnamate 4... 40 0.36
gb|AH014374.1|SEG_AY764881S Pinus taeda isolate 30 cinnamat... 40 0.36
gb|AY764883.1|AY764881S3 Pinus taeda isolate 30 cinnamate 4... 40 0.36
gb|AH014375.1|SEG_AY764885S Pinus taeda isolate 14 cinnamat... 40 0.36
gb|AY764887.1|AY764885S3 Pinus taeda isolate 14 cinnamate 4... 40 0.36
gb|AH014376.1|SEG_AY764889S Pinus taeda isolate 10 cinnamat... 40 0.36
gb|AY764891.1|AY764889S3 Pinus taeda isolate 10 cinnamate 4... 40 0.36
gb|AH014377.1|SEG_AY764893S Pinus taeda isolate 2 cinnamate... 40 0.36
gb|AY764895.1|AY764893S3 Pinus taeda isolate 2 cinnamate 4-... 40 0.36
gb|AH014378.1|SEG_AY764897S Pinus taeda isolate 3 cinnamate... 40 0.36
gb|AY764899.1|AY764897S3 Pinus taeda isolate 3 cinnamate 4-... 40 0.36
gb|AH014379.1|SEG_AY764901S Pinus taeda isolate 19 cinnamat... 40 0.36
gb|AY764903.1|AY764901S3 Pinus taeda isolate 19 cinnamate 4... 40 0.36
gb|AH014380.1|SEG_AY764905S Pinus taeda isolate 28 cinnamat... 40 0.36
gb|AY764907.1|AY764905S3 Pinus taeda isolate 28 cinnamate 4... 40 0.36
gb|AH014381.1|SEG_AY764909S Pinus taeda isolate 8 cinnamate... 40 0.36
gb|AY764911.1|AY764909S3 Pinus taeda isolate 8 cinnamate 4-... 40 0.36
gb|AH014382.1|SEG_AY764913S Pinus taeda isolate 17 cinnamat... 40 0.36
gb|AY764915.1|AY764913S3 Pinus taeda isolate 17 cinnamate 4... 40 0.36
gb|AH014383.1|SEG_AY764917S Pinus taeda isolate 1 cinnamate... 40 0.36
gb|AY764919.1|AY764917S3 Pinus taeda isolate 1 cinnamate 4-... 40 0.36
gb|AH014384.1|SEG_AY764921S Pinus taeda isolate 29 cinnamat... 40 0.36
gb|AY764923.1|AY764921S3 Pinus taeda isolate 29 cinnamate 4... 40 0.36
gb|AH014385.1|SEG_AY764925S Pinus taeda isolate 27 cinnamat... 40 0.36
gb|AY764927.1|AY764925S3 Pinus taeda isolate 27 cinnamate 4... 40 0.36
>gb|CV136864.1|CV136864 EST848073 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA
clone RPIAH27 5' end, mRNA sequence
Length = 865
Score = 42.1 bits (21), Expect = 0.091
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 1244 agccaggggaggtggtcggaccagttgaaggcgccgaggagctcgaacccctc 1296
||||| ||||| ||||| | ||||||||| || || ||||||||||| |||||
Sbjct: 838 agccatgggagatggtcagcccagttgaatgctccaaggagctcgaatccctc 786
>gb|CV143253.1|CV143253 EST854462 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA
clone RPICQ60 5' end, mRNA sequence
Length = 919
Score = 42.1 bits (21), Expect = 0.091
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 1043 gcgaccatgtcgtcgtcgccgagcttctcgtcaccctcgagggagaggagcacgtcgacg 1102
|||| ||||||||||||| ||||||| ||||| || | |||||| || || ||||| ||
Sbjct: 294 gcgatcatgtcgtcgtcgtcgagcttgtcgtctcctttgagggaaagaaggacgtccaca 235
Query: 1103 aagtc 1107
|||||
Sbjct: 234 aagtc 230
Score = 42.1 bits (21), Expect = 0.091
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 1244 agccaggggaggtggtcggaccagttgaaggcgccgaggagctcgaacccctc 1296
||||| ||||| ||||| | ||||||||| || || ||||||||||| |||||
Sbjct: 111 agccatgggagatggtcagcccagttgaatgctccaaggagctcgaatccctc 59
>gb|CV144252.1|CV144252 EST855461 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA
clone RPID314 5' end, mRNA sequence
Length = 966
Score = 42.1 bits (21), Expect = 0.091
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 1043 gcgaccatgtcgtcgtcgccgagcttctcgtcaccctcgagggagaggagcacgtcgacg 1102
|||| ||||||||||||| ||||||| ||||| || | |||||| || || ||||| ||
Sbjct: 294 gcgatcatgtcgtcgtcgtcgagcttgtcgtctcctttgagggaaagaaggacgtccaca 235
Query: 1103 aagtc 1107
|||||
Sbjct: 234 aagtc 230
Score = 42.1 bits (21), Expect = 0.091
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 1244 agccaggggaggtggtcggaccagttgaaggcgccgaggagctcgaacccctc 1296
||||| ||||| ||||| | ||||||||| || || ||||||||||| |||||
Sbjct: 111 agccatgggagatggtcagcccagttgaatgctccaaggagctcgaatccctc 59
>gb|DT624610.1|DT624610 EST1158945 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAH18 5' end, mRNA sequence
Length = 1022
Score = 42.1 bits (21), Expect = 0.091
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 1043 gcgaccatgtcgtcgtcgccgagcttctcgtcaccctcgagggagaggagcacgtcgacg 1102
|||| ||||||||||||| ||||||| ||||| || | |||||| || || ||||| ||
Sbjct: 294 gcgatcatgtcgtcgtcgtcgagcttgtcgtctcctttgagggaaagaaggacgtccaca 235
Query: 1103 aagtc 1107
|||||
Sbjct: 234 aagtc 230
Score = 42.1 bits (21), Expect = 0.091
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 1244 agccaggggaggtggtcggaccagttgaaggcgccgaggagctcgaacccctc 1296
||||| ||||| ||||| | ||||||||| || || ||||||||||| |||||
Sbjct: 111 agccatgggagatggtcagcccagttgaatgctccaaggagctcgaatccctc 59
>gb|AA556941.1|AA556941 783 Loblolly pine C Pinus taeda cDNA clone 7C7B, mRNA sequence
Length = 678
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 216 tccttcacaaccgcctgaaggtagggca 189
>gb|AI812771.1|AI812771 18H4 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 518
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 81 tccttcacaaccgcctgaaggtagggca 54
>gb|AI812842.1|AI812842 20F6 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 539
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 96 tccttcacaaccgcctgaaggtagggca 69
>gb|AW042602.1|AW042602 ST23G12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST23G12, mRNA sequence
Length = 478
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 146 tccttcacaaccgcctgaaggtagggca 119
>gb|BX251949.1|BX251949 BX251949 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP057F03 similar to TRANS CINNAMATE 4
MONOOXYGENASE, mRNA sequence
Length = 672
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 235 tccttcacaaccgcctgaaggtagggca 208
>gb|BX252744.1|BX252744 BX252744 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP070A11 similar to TRANS CINNAMATE 4
MONOOXYGENASE, mRNA sequence
Length = 608
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 450 tccttcacaaccgcctgaaggtagggca 423
>gb|BX252751.1|BX252751 BX252751 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP070B11 similar to TRANS CINNAMATE 4
MONOOXYGENASE, mRNA sequence
Length = 637
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 450 tccttcacaaccgcctgaaggtagggca 423
>gb|BX254863.1|BX254863 BX254863 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP106C08 similar to TRANS CINNAMATE 4
MONOOXYGENASE, mRNA sequence
Length = 672
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 143 tccttcacaaccgcctgaaggtagggca 116
>gb|BX254943.1|BX254943 BX254943 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP107H04 similar to TRANS CINNAMATE 4
MONOOXYGENASE, mRNA sequence
Length = 443
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 169 tccttcacaaccgcctgaaggtagggca 142
>gb|AW888069.1|AW888069 NXNV_126_H07_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_126_H07 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 353
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 99 tccttcacaaccgcctgaaggtagggca 72
>gb|BE187484.1|BE187484 NXNV_98_G10_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_98_G10 5' similar to Arabidopsis thaliana sequence
At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 49 tccttcacaaccgcctgaaggtagggca 22
>gb|BE241204.1|BE241204 NXNV_180_D03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_180_D03 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 228
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 29 tccttcacaaccgcctgaaggtagggca 2
>gb|BF049678.1|BF049678 NXCI_109_C08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_109_C08 5' similar to Arabidopsis
thaliana sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 203
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 49 tccttcacaaccgcctgaaggtagggca 22
>gb|BF221256.1|BF221256 NXCI_156_F01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_156_F01 5' similar to Arabidopsis
thaliana sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 391
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 166 tccttcacaaccgcctgaaggtagggca 139
>gb|BF609556.1|BF609556 NXSI_046_B06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_046_B06 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 329
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 88 tccttcacaaccgcctgaaggtagggca 61
>gb|BF610527.1|BF610527 NXSI_059_F06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_059_F06 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 532
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 302 tccttcacaaccgcctgaaggtagggca 275
>gb|BF777569.1|BF777569 NXSI_070_A12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_070_A12 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 318
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 80 tccttcacaaccgcctgaaggtagggca 53
>gb|BF778666.1|BF778666 NXSI_090_D08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_090_D08 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 440
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 80 tccttcacaaccgcctgaaggtagggca 53
>gb|BG039758.1|BG039758 NXSI_103_F12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_103_F12 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 322
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 88 tccttcacaaccgcctgaaggtagggca 61
>gb|BG040113.1|BG040113 NXSI_106_F02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_106_F02 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 326
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 88 tccttcacaaccgcctgaaggtagggca 61
>gb|BG275289.1|BG275289 NXSI_142_A01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_142_A01 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 321
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 80 tccttcacaaccgcctgaaggtagggca 53
>gb|BG275454.1|BG275454 NXSI_139_A03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_139_A03 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 257
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 88 tccttcacaaccgcctgaaggtagggca 61
>gb|BG275516.1|BG275516 NXSI_139_E05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_139_E05 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 417
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 155 tccttcacaaccgcctgaaggtagggca 128
>gb|BG275633.1|BG275633 NXSI_144_B02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_144_B02 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 511
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 302 tccttcacaaccgcctgaaggtagggca 275
>gb|BG276019.1|BG276019 NXSI_147_E12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_147_E12 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 343
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 83 tccttcacaaccgcctgaaggtagggca 56
>gb|BQ699307.1|BQ699307 NXRV126_A09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV126_A09 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 346
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 107 tccttcacaaccgcctgaaggtagggca 80
>gb|BQ699741.1|BQ699741 NXRV128_C09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV128_C09 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 560
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 139 tccttcacaaccgcctgaaggtagggca 112
>gb|BQ701255.1|BQ701255 NXSI_061_D08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_061_D08 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 316
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 88 tccttcacaaccgcctgaaggtagggca 61
>gb|BQ702414.1|BQ702414 NXSI_128_D03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_128_D03 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 447
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 88 tccttcacaaccgcctgaaggtagggca 61
>gb|CF387281.1|CF387281 RTDR1_11_A09.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_11_A09_A015 5', mRNA
sequence
Length = 748
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 410 tccttcacaaccgcctgaaggtagggca 383
>gb|CF387741.1|CF387741 RTDR1_19_A10.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_19_A10_A015 5', mRNA
sequence
Length = 687
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 555 tccttcacaaccgcctgaaggtagggca 528
>gb|CF389425.1|CF389425 RTDR2_7_E10.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_7_E10_A021 5', mRNA
sequence
Length = 713
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 596 tccttcacaaccgcctgaaggtagggca 569
>gb|CF395486.1|CF395486 RTDS2_11_B10.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_11_B10_A021 5', mRNA sequence
Length = 741
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 82 tccttcacaaccgcctgaaggtagggca 55
>gb|CF395618.1|CF395618 RTDS2_12_H02.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_12_H02_A021 5', mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 471 tccttcacaaccgcctgaaggtagggca 444
>gb|CF398102.1|CF398102 RTDS3_21_C08.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_21_C08_A022 3', mRNA sequence
Length = 758
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 435 tccttcacaaccgcctgaaggtagggca 462
>gb|CF398799.1|CF398799 RTDS3_16_E11.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_16_E11_A022 3', mRNA sequence
Length = 666
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 138 tccttcacaaccgcctgaaggtagggca 165
>gb|CF399422.1|CF399422 RTDS3_28_D06.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_28_D06_A022 5', mRNA sequence
Length = 560
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 330 tccttcacaaccgcctgaaggtagggca 303
>gb|CF399839.1|CF399839 RTWW1_1_H11.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_1_H11_A015 5', mRNA sequence
Length = 817
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 353 tccttcacaaccgcctgaaggtagggca 326
>gb|CF400053.1|CF400053 RTWW1_2_B07.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_2_B07_A015 5', mRNA sequence
Length = 701
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 267 tccttcacaaccgcctgaaggtagggca 240
>gb|CF400856.1|CF400856 RTWW1_8_G10.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_8_G10_A015 5', mRNA sequence
Length = 783
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 319 tccttcacaaccgcctgaaggtagggca 292
>gb|CF401178.1|CF401178 RTWW1_10_F06.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_10_F06_A015 5', mRNA sequence
Length = 753
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 346 tccttcacaaccgcctgaaggtagggca 319
>gb|CF402046.1|CF402046 RTWW1_16_D12.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_16_D12_A015 5', mRNA sequence
Length = 702
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 470 tccttcacaaccgcctgaaggtagggca 443
>gb|CF402326.1|CF402326 RTWW1_19_E10.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_19_E10_A015 5', mRNA sequence
Length = 799
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 267 tccttcacaaccgcctgaaggtagggca 240
>gb|CF402889.1|CF402889 RTWW1_23_D03.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_23_D03_A015 5', mRNA sequence
Length = 703
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 560 tccttcacaaccgcctgaaggtagggca 533
>gb|CF402941.1|CF402941 RTWW1_23_C03.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_23_C03_A015 5', mRNA sequence
Length = 741
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 689 tccttcacaaccgcctgaaggtagggca 662
>gb|CF470481.1|CF470481 RTDS1_17_C04.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_17_C04_A015 5', mRNA sequence
Length = 744
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 848 tccttcacaaccgcctgcaggtacggca 875
||||||||||||||||| ||||| ||||
Sbjct: 105 tccttcacaaccgcctgaaggtagggca 78
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 165,497
Number of Sequences: 355925
Number of extensions: 165497
Number of successful extensions: 43028
Number of sequences better than 0.5: 175
Number of HSP's better than 0.5 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42695
Number of HSP's gapped (non-prelim): 333
length of query: 2104
length of database: 217,277,237
effective HSP length: 20
effective length of query: 2084
effective length of database: 210,158,737
effective search space: 437970807908
effective search space used: 437970807908
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)