BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521641.2.1
(594 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF060615.1|BF060615 NXCI_118_B03_F NXCI (Nsf Xylem Compr... 42 0.025
gb|BF516953.1|BF516953 NXSI_007_C11_F NXSI (Nsf Xylem Side ... 42 0.025
gb|BF610412.1|BF610412 NXSI_058_D03_F NXSI (Nsf Xylem Side ... 42 0.025
gb|BQ702952.1|BQ702952 NXSI_134_F04_F NXSI (Nsf Xylem Side ... 42 0.025
gb|CF668728.1|CF668728 RTCNT1_38_G04.b1_A029 Root control P... 42 0.025
gb|CF668810.1|CF668810 RTCNT1_38_G04.g1_A029 Root control P... 42 0.025
gb|CF672997.1|CF672997 RTCNT1_75_H01.b1_A029 Root control P... 42 0.025
gb|CF673071.1|CF673071 RTCNT1_75_H01.g1_A029 Root control P... 42 0.025
gb|CO197695.1|CO197695 GEO1_8_H01.b1_A029 Root gravitropism... 42 0.025
gb|CO198819.1|CO198819 GEO1_16_G05.g1_A029 Root gravitropis... 42 0.025
gb|CO363825.1|CO363825 RTK1_12_B11.b1_A029 Roots minus pota... 42 0.025
gb|CO363908.1|CO363908 RTK1_12_B11.g1_A029 Roots minus pota... 42 0.025
gb|CO368326.1|CO368326 RTK1_40_A07.b1_A029 Roots minus pota... 42 0.025
gb|CO370530.1|CO370530 RTK1_68_B06.g1_A029 Roots minus pota... 42 0.025
gb|DR014982.1|DR014982 HEAT1_52_F11.g1_A029 Root at 37 C fo... 42 0.025
gb|DR070193.1|DR070193 RTDK1_11_G12.g1_A029 Roots, dark Pin... 42 0.025
gb|DR072072.1|DR072072 RTDK1_23_H10.g1_A029 Roots, dark Pin... 42 0.025
gb|DR072289.1|DR072289 RTDK1_25_G01.b1_A029 Roots, dark Pin... 42 0.025
gb|DR099221.1|DR099221 STRR1_54_B05.b1_A033 Stem Response R... 42 0.025
gb|DR161469.1|DR161469 RTFE1_12_A09.b1_A029 Roots minus iro... 42 0.025
gb|DR161544.1|DR161544 RTFE1_12_A09.g1_A029 Roots minus iro... 42 0.025
gb|DR167624.1|DR167624 RTPHOS1_20_B02.b1_A029 Roots minus p... 42 0.025
gb|DR167697.1|DR167697 RTPHOS1_20_B02.g1_A029 Roots minus p... 42 0.025
gb|U76756.1|PRU76756 Pinus radiata endo-beta-1,4-glucanase ... 42 0.025
>gb|BF060615.1|BF060615 NXCI_118_B03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_118_B03 5' similar to Arabidopsis
thaliana sequence At1g02800 endo-1,4-beta-glucanase
precursor, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 343
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 123 acttggcaccgtagcccaccatgta 99
>gb|BF516953.1|BF516953 NXSI_007_C11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_007_C11 5' similar to Arabidopsis thaliana
sequence At4g02290 putative endo-1,4-beta glucanase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 566
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 307 acttggcaccgtagcccaccatgta 283
>gb|BF610412.1|BF610412 NXSI_058_D03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_058_D03 5' similar to Arabidopsis thaliana
sequence At1g02800 endo-1,4-beta-glucanase precursor,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 437
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 47 acttggcaccgtagcccaccatgta 23
>gb|BQ702952.1|BQ702952 NXSI_134_F04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_134_F04 5' similar to Arabidopsis thaliana
sequence At1g02800 endo-1,4-beta-glucanase precursor,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 521
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 44 acttggcaccgtagcccaccatgta 20
>gb|CF668728.1|CF668728 RTCNT1_38_G04.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_38_G04_A029 3', mRNA sequence
Length = 782
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 113 acttggcaccgtagcccaccatgta 89
>gb|CF668810.1|CF668810 RTCNT1_38_G04.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_38_G04_A029 5', mRNA sequence
Length = 699
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 478 acttggcaccgtagcccaccatgta 454
>gb|CF672997.1|CF672997 RTCNT1_75_H01.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_75_H01_A029 3', mRNA sequence
Length = 737
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 138 acttggcaccgtagcccaccatgta 114
>gb|CF673071.1|CF673071 RTCNT1_75_H01.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_75_H01_A029 5', mRNA sequence
Length = 286
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 146 acttggcaccgtagcccaccatgta 122
>gb|CO197695.1|CO197695 GEO1_8_H01.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_8_H01_A029 3', mRNA sequence
Length = 648
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 49 acttggcaccgtagcccaccatgta 25
>gb|CO198819.1|CO198819 GEO1_16_G05.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_16_G05_A029 5', mRNA sequence
Length = 722
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 110 acttggcaccgtagcccaccatgta 86
>gb|CO363825.1|CO363825 RTK1_12_B11.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_B11_A029 3', mRNA sequence
Length = 860
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 275 acttggcaccgtagcccaccatgta 299
>gb|CO363908.1|CO363908 RTK1_12_B11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_B11_A029 5', mRNA sequence
Length = 780
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 570 acttggcaccgtagcccaccatgta 594
>gb|CO368326.1|CO368326 RTK1_40_A07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_40_A07_A029 3', mRNA sequence
Length = 711
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 102 acttggcaccgtagcccaccatgta 78
>gb|CO370530.1|CO370530 RTK1_68_B06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_68_B06_A029 5', mRNA sequence
Length = 708
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 570 acttggcgccgtagcccaccatgta 594
|||||| ||||||||||||||||||
Sbjct: 545 acttggagccgtagcccaccatgta 569
>gb|DR014982.1|DR014982 HEAT1_52_F11.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_52_F11_A029 5', mRNA sequence
Length = 877
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 555 acttggcaccgtagcccaccatgta 579
>gb|DR070193.1|DR070193 RTDK1_11_G12.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_11_G12_A029 5', mRNA sequence
Length = 749
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 596 acttggcaccgtagcccaccatgta 620
>gb|DR072072.1|DR072072 RTDK1_23_H10.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_23_H10_A029 5', mRNA sequence
Length = 689
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 639 acttggcaccgtagcccaccatgta 615
>gb|DR072289.1|DR072289 RTDK1_25_G01.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_25_G01_A029 3', mRNA sequence
Length = 696
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 41 acttggcaccgtagcccaccatgta 17
>gb|DR099221.1|DR099221 STRR1_54_B05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_54_B05_A033 3', mRNA sequence
Length = 670
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 214 acttggcaccgtagcccaccatgta 190
>gb|DR161469.1|DR161469 RTFE1_12_A09.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_12_A09_A029 3', mRNA sequence
Length = 804
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 137 acttggcaccgtagcccaccatgta 113
>gb|DR161544.1|DR161544 RTFE1_12_A09.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_12_A09_A029 5', mRNA sequence
Length = 729
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 232 acttggcaccgtagcccaccatgta 208
>gb|DR167624.1|DR167624 RTPHOS1_20_B02.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_20_B02_A029 3', mRNA sequence
Length = 752
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 155 acttggcaccgtagcccaccatgta 131
>gb|DR167697.1|DR167697 RTPHOS1_20_B02.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_20_B02_A029 5', mRNA sequence
Length = 835
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 233 acttggcaccgtagcccaccatgta 209
>gb|U76756.1|PRU76756 Pinus radiata endo-beta-1,4-glucanase (PrCel2) mRNA, complete cds
Length = 1950
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 570 acttggcgccgtagcccaccatgta 594
||||||| |||||||||||||||||
Sbjct: 1320 acttggcaccgtagcccaccatgta 1296
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,117
Number of Sequences: 355925
Number of extensions: 37117
Number of successful extensions: 10426
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10400
Number of HSP's gapped (non-prelim): 26
length of query: 594
length of database: 217,277,237
effective HSP length: 19
effective length of query: 575
effective length of database: 210,514,662
effective search space: 121045930650
effective search space used: 121045930650
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)